Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G17695

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0098586: cellular response to virus0.00E+00
3GO:0090071: negative regulation of ribosome biogenesis0.00E+00
4GO:0017009: protein-phycocyanobilin linkage0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
8GO:0018316: peptide cross-linking via L-cystine0.00E+00
9GO:0015882: L-ascorbic acid transport0.00E+00
10GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
11GO:0008298: intracellular mRNA localization0.00E+00
12GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
13GO:0051246: regulation of protein metabolic process0.00E+00
14GO:0006399: tRNA metabolic process0.00E+00
15GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
16GO:0048564: photosystem I assembly2.41E-07
17GO:0016123: xanthophyll biosynthetic process2.20E-06
18GO:0015979: photosynthesis2.46E-06
19GO:1902326: positive regulation of chlorophyll biosynthetic process7.51E-06
20GO:0018298: protein-chromophore linkage1.82E-05
21GO:0009657: plastid organization2.45E-05
22GO:0009658: chloroplast organization5.15E-05
23GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly5.66E-05
24GO:0009765: photosynthesis, light harvesting9.96E-05
25GO:0016120: carotene biosynthetic process1.54E-04
26GO:0045038: protein import into chloroplast thylakoid membrane1.54E-04
27GO:0010190: cytochrome b6f complex assembly2.21E-04
28GO:0009306: protein secretion3.95E-04
29GO:0010362: negative regulation of anion channel activity by blue light4.10E-04
30GO:0009443: pyridoxal 5'-phosphate salvage4.10E-04
31GO:0033388: putrescine biosynthetic process from arginine4.10E-04
32GO:0071806: protein transmembrane transport4.10E-04
33GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.10E-04
34GO:0071277: cellular response to calcium ion4.10E-04
35GO:0042371: vitamin K biosynthetic process4.10E-04
36GO:0071454: cellular response to anoxia4.10E-04
37GO:0006436: tryptophanyl-tRNA aminoacylation4.10E-04
38GO:1902458: positive regulation of stomatal opening4.10E-04
39GO:0010028: xanthophyll cycle4.10E-04
40GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.10E-04
41GO:0006419: alanyl-tRNA aminoacylation4.10E-04
42GO:0006605: protein targeting4.80E-04
43GO:0000373: Group II intron splicing7.02E-04
44GO:0006364: rRNA processing7.54E-04
45GO:0046741: transport of virus in host, tissue to tissue8.88E-04
46GO:0080005: photosystem stoichiometry adjustment8.88E-04
47GO:0048314: embryo sac morphogenesis8.88E-04
48GO:0019752: carboxylic acid metabolic process8.88E-04
49GO:0030187: melatonin biosynthetic process8.88E-04
50GO:0000256: allantoin catabolic process8.88E-04
51GO:0034755: iron ion transmembrane transport8.88E-04
52GO:0006435: threonyl-tRNA aminoacylation8.88E-04
53GO:0009446: putrescine biosynthetic process8.88E-04
54GO:0080183: response to photooxidative stress8.88E-04
55GO:1903426: regulation of reactive oxygen species biosynthetic process8.88E-04
56GO:0080153: negative regulation of reductive pentose-phosphate cycle8.88E-04
57GO:0010275: NAD(P)H dehydrogenase complex assembly8.88E-04
58GO:0010027: thylakoid membrane organization1.11E-03
59GO:0015995: chlorophyll biosynthetic process1.37E-03
60GO:0090391: granum assembly1.44E-03
61GO:0010136: ureide catabolic process1.44E-03
62GO:0009405: pathogenesis1.44E-03
63GO:0006013: mannose metabolic process1.44E-03
64GO:0051604: protein maturation1.44E-03
65GO:0009767: photosynthetic electron transport chain1.44E-03
66GO:0010207: photosystem II assembly1.62E-03
67GO:0019853: L-ascorbic acid biosynthetic process1.82E-03
68GO:0080167: response to karrikin1.99E-03
69GO:0009052: pentose-phosphate shunt, non-oxidative branch2.08E-03
70GO:0090307: mitotic spindle assembly2.08E-03
71GO:0006809: nitric oxide biosynthetic process2.08E-03
72GO:0006145: purine nucleobase catabolic process2.08E-03
73GO:0046739: transport of virus in multicellular host2.08E-03
74GO:0051016: barbed-end actin filament capping2.08E-03
75GO:0043572: plastid fission2.08E-03
76GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.08E-03
77GO:0006986: response to unfolded protein2.08E-03
78GO:2001141: regulation of RNA biosynthetic process2.08E-03
79GO:0009067: aspartate family amino acid biosynthetic process2.08E-03
80GO:0051085: chaperone mediated protein folding requiring cofactor2.08E-03
81GO:0031122: cytoplasmic microtubule organization2.80E-03
82GO:0006221: pyrimidine nucleotide biosynthetic process2.80E-03
83GO:0006021: inositol biosynthetic process2.80E-03
84GO:0009902: chloroplast relocation2.80E-03
85GO:0042274: ribosomal small subunit biogenesis2.80E-03
86GO:0009644: response to high light intensity3.22E-03
87GO:0016558: protein import into peroxisome matrix3.59E-03
88GO:0006810: transport3.72E-03
89GO:0008033: tRNA processing4.15E-03
90GO:0009793: embryo development ending in seed dormancy4.23E-03
91GO:0009643: photosynthetic acclimation4.44E-03
92GO:0046855: inositol phosphate dephosphorylation4.44E-03
93GO:0050665: hydrogen peroxide biosynthetic process4.44E-03
94GO:0042549: photosystem II stabilization4.44E-03
95GO:0055114: oxidation-reduction process5.08E-03
96GO:0017148: negative regulation of translation5.35E-03
97GO:0048280: vesicle fusion with Golgi apparatus5.35E-03
98GO:1901259: chloroplast rRNA processing5.35E-03
99GO:0010189: vitamin E biosynthetic process5.35E-03
100GO:0009854: oxidative photosynthetic carbon pathway5.35E-03
101GO:0009088: threonine biosynthetic process5.35E-03
102GO:0010193: response to ozone5.53E-03
103GO:0019761: glucosinolate biosynthetic process5.90E-03
104GO:1900056: negative regulation of leaf senescence6.32E-03
105GO:0009645: response to low light intensity stimulus6.32E-03
106GO:0006400: tRNA modification6.32E-03
107GO:0010044: response to aluminum ion6.32E-03
108GO:0006401: RNA catabolic process6.32E-03
109GO:0009772: photosynthetic electron transport in photosystem II6.32E-03
110GO:0006402: mRNA catabolic process7.35E-03
111GO:0009642: response to light intensity7.35E-03
112GO:0009704: de-etiolation7.35E-03
113GO:0042255: ribosome assembly7.35E-03
114GO:0006353: DNA-templated transcription, termination7.35E-03
115GO:2000070: regulation of response to water deprivation7.35E-03
116GO:0009231: riboflavin biosynthetic process7.35E-03
117GO:0032544: plastid translation8.43E-03
118GO:0017004: cytochrome complex assembly8.43E-03
119GO:0071482: cellular response to light stimulus8.43E-03
120GO:0009821: alkaloid biosynthetic process9.58E-03
121GO:0090333: regulation of stomatal closure9.58E-03
122GO:0098656: anion transmembrane transport9.58E-03
123GO:0009098: leucine biosynthetic process1.08E-02
124GO:0010380: regulation of chlorophyll biosynthetic process1.08E-02
125GO:0031425: chloroplast RNA processing1.08E-02
126GO:0009638: phototropism1.08E-02
127GO:0006896: Golgi to vacuole transport1.20E-02
128GO:0045036: protein targeting to chloroplast1.20E-02
129GO:0006949: syncytium formation1.20E-02
130GO:0006259: DNA metabolic process1.20E-02
131GO:0006265: DNA topological change1.33E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.33E-02
133GO:0009773: photosynthetic electron transport in photosystem I1.33E-02
134GO:0006879: cellular iron ion homeostasis1.33E-02
135GO:0006352: DNA-templated transcription, initiation1.33E-02
136GO:0006415: translational termination1.33E-02
137GO:0009637: response to blue light1.33E-02
138GO:0009853: photorespiration1.33E-02
139GO:0045037: protein import into chloroplast stroma1.47E-02
140GO:0006790: sulfur compound metabolic process1.47E-02
141GO:0006807: nitrogen compound metabolic process1.61E-02
142GO:0009725: response to hormone1.61E-02
143GO:0055085: transmembrane transport1.63E-02
144GO:0006457: protein folding1.68E-02
145GO:0010114: response to red light1.72E-02
146GO:0009744: response to sucrose1.72E-02
147GO:0034605: cellular response to heat1.75E-02
148GO:0010020: chloroplast fission1.75E-02
149GO:0019253: reductive pentose-phosphate cycle1.75E-02
150GO:0090351: seedling development1.90E-02
151GO:0046854: phosphatidylinositol phosphorylation1.90E-02
152GO:0006863: purine nucleobase transport2.05E-02
153GO:0006833: water transport2.05E-02
154GO:0042538: hyperosmotic salinity response2.16E-02
155GO:0009863: salicylic acid mediated signaling pathway2.21E-02
156GO:0009409: response to cold2.31E-02
157GO:0006418: tRNA aminoacylation for protein translation2.37E-02
158GO:0009768: photosynthesis, light harvesting in photosystem I2.37E-02
159GO:0007017: microtubule-based process2.37E-02
160GO:0051302: regulation of cell division2.37E-02
161GO:0019953: sexual reproduction2.37E-02
162GO:0042254: ribosome biogenesis2.39E-02
163GO:0019915: lipid storage2.53E-02
164GO:0051321: meiotic cell cycle2.53E-02
165GO:0016226: iron-sulfur cluster assembly2.70E-02
166GO:0080092: regulation of pollen tube growth2.70E-02
167GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.87E-02
168GO:0009625: response to insect2.87E-02
169GO:0006012: galactose metabolic process2.87E-02
170GO:0009735: response to cytokinin2.97E-02
171GO:0009553: embryo sac development3.21E-02
172GO:0070417: cellular response to cold3.23E-02
173GO:0042147: retrograde transport, endosome to Golgi3.23E-02
174GO:0016117: carotenoid biosynthetic process3.23E-02
175GO:0006396: RNA processing3.40E-02
176GO:0034220: ion transmembrane transport3.41E-02
177GO:0000413: protein peptidyl-prolyl isomerization3.41E-02
178GO:0010118: stomatal movement3.41E-02
179GO:0006606: protein import into nucleus3.41E-02
180GO:0048868: pollen tube development3.60E-02
181GO:0015986: ATP synthesis coupled proton transport3.79E-02
182GO:0007059: chromosome segregation3.79E-02
183GO:0006623: protein targeting to vacuole3.99E-02
184GO:0009791: post-embryonic development3.99E-02
185GO:0008654: phospholipid biosynthetic process3.99E-02
186GO:0000302: response to reactive oxygen species4.18E-02
187GO:0006891: intra-Golgi vesicle-mediated transport4.18E-02
188GO:0002229: defense response to oomycetes4.18E-02
189GO:0006635: fatty acid beta-oxidation4.18E-02
190GO:0010583: response to cyclopentenone4.38E-02
191GO:0016032: viral process4.38E-02
192GO:0032502: developmental process4.38E-02
193GO:0032259: methylation4.68E-02
194GO:0009828: plant-type cell wall loosening4.79E-02
RankGO TermAdjusted P value
1GO:0010349: L-galactose dehydrogenase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
5GO:0010276: phytol kinase activity0.00E+00
6GO:0015229: L-ascorbic acid transporter activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004760: serine-pyruvate transaminase activity0.00E+00
9GO:0042623: ATPase activity, coupled0.00E+00
10GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
11GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0050281: serine-glyoxylate transaminase activity0.00E+00
14GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
15GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
16GO:0016491: oxidoreductase activity9.09E-05
17GO:0043495: protein anchor9.96E-05
18GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor9.96E-05
19GO:0016168: chlorophyll binding1.48E-04
20GO:0019843: rRNA binding3.52E-04
21GO:0022891: substrate-specific transmembrane transporter activity3.53E-04
22GO:0019899: enzyme binding3.84E-04
23GO:0004813: alanine-tRNA ligase activity4.10E-04
24GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity4.10E-04
25GO:0047911: galacturan 1,4-alpha-galacturonidase activity4.10E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.10E-04
27GO:0015075: ion transmembrane transporter activity4.10E-04
28GO:0004830: tryptophan-tRNA ligase activity4.10E-04
29GO:0030941: chloroplast targeting sequence binding4.10E-04
30GO:0004654: polyribonucleotide nucleotidyltransferase activity4.10E-04
31GO:0010347: L-galactose-1-phosphate phosphatase activity4.10E-04
32GO:0004451: isocitrate lyase activity4.10E-04
33GO:0004033: aldo-keto reductase (NADP) activity4.80E-04
34GO:0010181: FMN binding5.88E-04
35GO:0048038: quinone binding7.01E-04
36GO:0004829: threonine-tRNA ligase activity8.88E-04
37GO:0008934: inositol monophosphate 1-phosphatase activity8.88E-04
38GO:0052833: inositol monophosphate 4-phosphatase activity8.88E-04
39GO:0003862: 3-isopropylmalate dehydrogenase activity8.88E-04
40GO:0009977: proton motive force dependent protein transmembrane transporter activity8.88E-04
41GO:0052832: inositol monophosphate 3-phosphatase activity8.88E-04
42GO:0032947: protein complex scaffold1.44E-03
43GO:0004848: ureidoglycolate hydrolase activity1.44E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity1.44E-03
45GO:0004751: ribose-5-phosphate isomerase activity1.44E-03
46GO:0070402: NADPH binding1.44E-03
47GO:0004180: carboxypeptidase activity1.44E-03
48GO:0016149: translation release factor activity, codon specific2.08E-03
49GO:0009041: uridylate kinase activity2.08E-03
50GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.08E-03
51GO:0016851: magnesium chelatase activity2.08E-03
52GO:0009882: blue light photoreceptor activity2.08E-03
53GO:0043023: ribosomal large subunit binding2.08E-03
54GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.08E-03
55GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.08E-03
56GO:0004072: aspartate kinase activity2.08E-03
57GO:0005528: FK506 binding2.25E-03
58GO:0008565: protein transporter activity2.38E-03
59GO:0016987: sigma factor activity2.80E-03
60GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.80E-03
61GO:0043015: gamma-tubulin binding2.80E-03
62GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.80E-03
63GO:0008891: glycolate oxidase activity2.80E-03
64GO:0001053: plastid sigma factor activity2.80E-03
65GO:0051861: glycolipid binding2.80E-03
66GO:0008453: alanine-glyoxylate transaminase activity2.80E-03
67GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.54E-03
68GO:0003727: single-stranded RNA binding3.54E-03
69GO:0051011: microtubule minus-end binding3.59E-03
70GO:0042802: identical protein binding4.27E-03
71GO:0004462: lactoylglutathione lyase activity4.44E-03
72GO:0042578: phosphoric ester hydrolase activity4.44E-03
73GO:0004605: phosphatidate cytidylyltransferase activity4.44E-03
74GO:0008080: N-acetyltransferase activity4.47E-03
75GO:0015631: tubulin binding5.35E-03
76GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.35E-03
77GO:0004559: alpha-mannosidase activity5.35E-03
78GO:0008195: phosphatidate phosphatase activity5.35E-03
79GO:0016597: amino acid binding7.56E-03
80GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.43E-03
81GO:0003747: translation release factor activity9.58E-03
82GO:0008236: serine-type peptidase activity9.95E-03
83GO:0005381: iron ion transmembrane transporter activity1.08E-02
84GO:0016844: strictosidine synthase activity1.08E-02
85GO:0005089: Rho guanyl-nucleotide exchange factor activity1.33E-02
86GO:0000049: tRNA binding1.47E-02
87GO:0000175: 3'-5'-exoribonuclease activity1.61E-02
88GO:0005315: inorganic phosphate transmembrane transporter activity1.61E-02
89GO:0000155: phosphorelay sensor kinase activity1.61E-02
90GO:0051537: 2 iron, 2 sulfur cluster binding1.86E-02
91GO:0031409: pigment binding2.05E-02
92GO:0051536: iron-sulfur cluster binding2.21E-02
93GO:0043424: protein histidine kinase binding2.37E-02
94GO:0005345: purine nucleobase transmembrane transporter activity2.37E-02
95GO:0051087: chaperone binding2.37E-02
96GO:0004176: ATP-dependent peptidase activity2.53E-02
97GO:0031625: ubiquitin protein ligase binding2.57E-02
98GO:0008233: peptidase activity2.99E-02
99GO:0008514: organic anion transmembrane transporter activity3.05E-02
100GO:0004812: aminoacyl-tRNA ligase activity3.23E-02
101GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.60E-02
102GO:0004872: receptor activity3.99E-02
103GO:0016762: xyloglucan:xyloglucosyl transferase activity4.18E-02
104GO:0016829: lyase activity4.46E-02
105GO:0003924: GTPase activity4.93E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0009507: chloroplast4.85E-62
3GO:0009535: chloroplast thylakoid membrane9.73E-36
4GO:0009570: chloroplast stroma5.82E-16
5GO:0009941: chloroplast envelope1.20E-11
6GO:0009534: chloroplast thylakoid4.98E-09
7GO:0009579: thylakoid4.47E-08
8GO:0009543: chloroplast thylakoid lumen3.45E-07
9GO:0033281: TAT protein transport complex2.60E-05
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.35E-05
11GO:0031977: thylakoid lumen4.80E-05
12GO:0009523: photosystem II5.94E-05
13GO:0009706: chloroplast inner membrane2.28E-04
14GO:0009654: photosystem II oxygen evolving complex2.43E-04
15GO:0042651: thylakoid membrane2.43E-04
16GO:0009782: photosystem I antenna complex4.10E-04
17GO:0042644: chloroplast nucleoid7.02E-04
18GO:0080085: signal recognition particle, chloroplast targeting8.88E-04
19GO:0008274: gamma-tubulin ring complex8.88E-04
20GO:0008290: F-actin capping protein complex8.88E-04
21GO:0009528: plastid inner membrane1.44E-03
22GO:0010007: magnesium chelatase complex1.44E-03
23GO:0030095: chloroplast photosystem II1.62E-03
24GO:0010287: plastoglobule1.66E-03
25GO:0031969: chloroplast membrane1.99E-03
26GO:0000923: equatorial microtubule organizing center2.08E-03
27GO:0042646: plastid nucleoid2.08E-03
28GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.80E-03
29GO:0009526: plastid envelope2.80E-03
30GO:0030286: dynein complex2.80E-03
31GO:0055035: plastid thylakoid membrane3.59E-03
32GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)4.44E-03
33GO:0019898: extrinsic component of membrane5.16E-03
34GO:0031359: integral component of chloroplast outer membrane6.32E-03
35GO:0009533: chloroplast stromal thylakoid6.32E-03
36GO:0009295: nucleoid7.12E-03
37GO:0005778: peroxisomal membrane7.12E-03
38GO:0009505: plant-type cell wall7.27E-03
39GO:0009538: photosystem I reaction center7.35E-03
40GO:0012507: ER to Golgi transport vesicle membrane7.35E-03
41GO:0009539: photosystem II reaction center8.43E-03
42GO:0005786: signal recognition particle, endoplasmic reticulum targeting8.43E-03
43GO:0000922: spindle pole9.58E-03
44GO:0009707: chloroplast outer membrane1.05E-02
45GO:0016324: apical plasma membrane1.20E-02
46GO:0012511: monolayer-surrounded lipid storage body1.33E-02
47GO:0009508: plastid chromosome1.61E-02
48GO:0030076: light-harvesting complex1.90E-02
49GO:0009536: plastid1.91E-02
50GO:0043234: protein complex2.05E-02
51GO:0005875: microtubule associated complex2.05E-02
52GO:0031966: mitochondrial membrane2.16E-02
53GO:0045271: respiratory chain complex I2.37E-02
54GO:0016021: integral component of membrane2.42E-02
55GO:0016020: membrane2.68E-02
56GO:0005747: mitochondrial respiratory chain complex I2.84E-02
57GO:0005623: cell4.24E-02
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Gene type



Gene DE type