GO Enrichment Analysis of Co-expressed Genes with
AT2G11890
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071433: cell wall repair | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 4 | GO:0042254: ribosome biogenesis | 6.37E-06 |
| 5 | GO:0010162: seed dormancy process | 1.29E-05 |
| 6 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.76E-05 |
| 7 | GO:0034470: ncRNA processing | 5.64E-05 |
| 8 | GO:0009294: DNA mediated transformation | 5.84E-05 |
| 9 | GO:1900864: mitochondrial RNA modification | 2.04E-04 |
| 10 | GO:0042273: ribosomal large subunit biogenesis | 2.04E-04 |
| 11 | GO:0016554: cytidine to uridine editing | 3.24E-04 |
| 12 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.89E-04 |
| 13 | GO:0006364: rRNA processing | 4.67E-04 |
| 14 | GO:1900865: chloroplast RNA modification | 7.48E-04 |
| 15 | GO:0006457: protein folding | 9.25E-04 |
| 16 | GO:0009451: RNA modification | 1.13E-03 |
| 17 | GO:0000027: ribosomal large subunit assembly | 1.43E-03 |
| 18 | GO:0030150: protein import into mitochondrial matrix | 1.43E-03 |
| 19 | GO:0007005: mitochondrion organization | 1.73E-03 |
| 20 | GO:0000413: protein peptidyl-prolyl isomerization | 2.15E-03 |
| 21 | GO:0080156: mitochondrial mRNA modification | 2.61E-03 |
| 22 | GO:0046686: response to cadmium ion | 2.81E-03 |
| 23 | GO:0016049: cell growth | 3.87E-03 |
| 24 | GO:0048527: lateral root development | 4.42E-03 |
| 25 | GO:0000154: rRNA modification | 6.07E-03 |
| 26 | GO:0006414: translational elongation | 7.95E-03 |
| 27 | GO:0016569: covalent chromatin modification | 8.43E-03 |
| 28 | GO:0000398: mRNA splicing, via spliceosome | 9.72E-03 |
| 29 | GO:0009790: embryo development | 1.15E-02 |
| 30 | GO:0006412: translation | 1.30E-02 |
| 31 | GO:0009723: response to ethylene | 1.95E-02 |
| 32 | GO:0045892: negative regulation of transcription, DNA-templated | 2.36E-02 |
| 33 | GO:0009793: embryo development ending in seed dormancy | 2.51E-02 |
| 34 | GO:0048364: root development | 2.79E-02 |
| 35 | GO:0009651: response to salt stress | 3.64E-02 |
| 36 | GO:0009735: response to cytokinin | 3.82E-02 |
| 37 | GO:0051301: cell division | 4.33E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0050897: cobalt ion binding | 6.26E-06 |
| 3 | GO:0004407: histone deacetylase activity | 3.76E-05 |
| 4 | GO:0070181: small ribosomal subunit rRNA binding | 9.94E-05 |
| 5 | GO:0003746: translation elongation factor activity | 2.70E-04 |
| 6 | GO:0030515: snoRNA binding | 4.56E-04 |
| 7 | GO:0000166: nucleotide binding | 6.73E-04 |
| 8 | GO:0044183: protein binding involved in protein folding | 9.07E-04 |
| 9 | GO:0003723: RNA binding | 1.14E-03 |
| 10 | GO:0003924: GTPase activity | 3.03E-03 |
| 11 | GO:0004721: phosphoprotein phosphatase activity | 3.73E-03 |
| 12 | GO:0003735: structural constituent of ribosome | 3.83E-03 |
| 13 | GO:0016787: hydrolase activity | 4.20E-03 |
| 14 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.23E-03 |
| 15 | GO:0008234: cysteine-type peptidase activity | 7.38E-03 |
| 16 | GO:0051082: unfolded protein binding | 8.79E-03 |
| 17 | GO:0008270: zinc ion binding | 8.94E-03 |
| 18 | GO:0004519: endonuclease activity | 2.87E-02 |
| 19 | GO:0016887: ATPase activity | 3.70E-02 |
| 20 | GO:0005515: protein binding | 4.36E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005730: nucleolus | 1.01E-11 |
| 2 | GO:0005618: cell wall | 4.20E-06 |
| 3 | GO:0032040: small-subunit processome | 1.85E-05 |
| 4 | GO:0005662: DNA replication factor A complex | 2.19E-05 |
| 5 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.63E-04 |
| 6 | GO:0031428: box C/D snoRNP complex | 3.24E-04 |
| 7 | GO:0000974: Prp19 complex | 3.24E-04 |
| 8 | GO:0005739: mitochondrion | 4.50E-04 |
| 9 | GO:0030687: preribosome, large subunit precursor | 4.56E-04 |
| 10 | GO:0034399: nuclear periphery | 5.25E-04 |
| 11 | GO:0005747: mitochondrial respiratory chain complex I | 5.67E-04 |
| 12 | GO:0071011: precatalytic spliceosome | 7.48E-04 |
| 13 | GO:0071013: catalytic step 2 spliceosome | 9.07E-04 |
| 14 | GO:0005759: mitochondrial matrix | 1.01E-03 |
| 15 | GO:0005774: vacuolar membrane | 1.49E-03 |
| 16 | GO:0005840: ribosome | 1.70E-03 |
| 17 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.94E-03 |
| 18 | GO:0022625: cytosolic large ribosomal subunit | 2.17E-03 |
| 19 | GO:0030529: intracellular ribonucleoprotein complex | 3.34E-03 |
| 20 | GO:0005834: heterotrimeric G-protein complex | 8.08E-03 |
| 21 | GO:0005654: nucleoplasm | 1.01E-02 |
| 22 | GO:0009543: chloroplast thylakoid lumen | 1.03E-02 |
| 23 | GO:0005829: cytosol | 1.31E-02 |
| 24 | GO:0009536: plastid | 1.33E-02 |
| 25 | GO:0022627: cytosolic small ribosomal subunit | 1.58E-02 |
| 26 | GO:0005743: mitochondrial inner membrane | 2.57E-02 |
| 27 | GO:0009506: plasmodesma | 4.17E-02 |