co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G10940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015717: triose phosphate transport	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:1905177: tracheary element differentiation	0.00E+00
4	GO:0071474: cellular hyperosmotic response	0.00E+00
5	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0030155: regulation of cell adhesion	0.00E+00
8	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
9	GO:0005996: monosaccharide metabolic process	0.00E+00
10	GO:0090279: regulation of calcium ion import	0.00E+00
11	GO:0015979: photosynthesis	1.60E-13
12	GO:0032544: plastid translation	1.96E-11
13	GO:0009773: photosynthetic electron transport in photosystem I	2.71E-10
14	GO:0009768: photosynthesis, light harvesting in photosystem I	2.81E-07
15	GO:0010027: thylakoid membrane organization	2.86E-07
16	GO:0006412: translation	4.44E-07
17	GO:0015995: chlorophyll biosynthetic process	4.85E-07
18	GO:0018026: peptidyl-lysine monomethylation	6.50E-06
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.50E-06
20	GO:0061077: chaperone-mediated protein folding	1.29E-05
21	GO:0018298: protein-chromophore linkage	1.39E-05
22	GO:0009409: response to cold	1.41E-05
23	GO:0006000: fructose metabolic process	2.27E-05
24	GO:0010206: photosystem II repair	2.81E-05
25	GO:0042254: ribosome biogenesis	3.95E-05
26	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.98E-05
27	GO:0019684: photosynthesis, light reaction	6.14E-05
28	GO:0010021: amylopectin biosynthetic process	8.79E-05
29	GO:0006094: gluconeogenesis	9.32E-05
30	GO:0010207: photosystem II assembly	1.12E-04
31	GO:0009735: response to cytokinin	1.50E-04
32	GO:0042549: photosystem II stabilization	1.97E-04
33	GO:0009658: chloroplast organization	2.39E-04
34	GO:0009645: response to low light intensity stimulus	3.44E-04
35	GO:0065002: intracellular protein transmembrane transport	3.81E-04
36	GO:0043686: co-translational protein modification	3.81E-04
37	GO:0080093: regulation of photorespiration	3.81E-04
38	GO:0043007: maintenance of rDNA	3.81E-04
39	GO:0031998: regulation of fatty acid beta-oxidation	3.81E-04
40	GO:0000023: maltose metabolic process	3.81E-04
41	GO:0000025: maltose catabolic process	3.81E-04
42	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	3.81E-04
43	GO:0005980: glycogen catabolic process	3.81E-04
44	GO:0043953: protein transport by the Tat complex	3.81E-04
45	GO:0006002: fructose 6-phosphate metabolic process	5.27E-04
46	GO:0010205: photoinhibition	7.45E-04
47	GO:0031648: protein destabilization	8.27E-04
48	GO:0051262: protein tetramerization	8.27E-04
49	GO:0035304: regulation of protein dephosphorylation	8.27E-04
50	GO:1904961: quiescent center organization	8.27E-04
51	GO:0005976: polysaccharide metabolic process	8.27E-04
52	GO:0006782: protoporphyrinogen IX biosynthetic process	8.68E-04
53	GO:0005983: starch catabolic process	1.14E-03
54	GO:0042742: defense response to bacterium	1.14E-03
55	GO:0005986: sucrose biosynthetic process	1.29E-03
56	GO:0010623: programmed cell death involved in cell development	1.34E-03
57	GO:0035436: triose phosphate transmembrane transport	1.34E-03
58	GO:0016050: vesicle organization	1.34E-03
59	GO:0048281: inflorescence morphogenesis	1.34E-03
60	GO:0071367: cellular response to brassinosteroid stimulus	1.34E-03
61	GO:0009405: pathogenesis	1.34E-03
62	GO:0006518: peptide metabolic process	1.34E-03
63	GO:0071484: cellular response to light intensity	1.93E-03
64	GO:0010306: rhamnogalacturonan II biosynthetic process	1.93E-03
65	GO:0010731: protein glutathionylation	1.93E-03
66	GO:1901332: negative regulation of lateral root development	1.93E-03
67	GO:0010148: transpiration	1.93E-03
68	GO:0015713: phosphoglycerate transport	2.60E-03
69	GO:0006808: regulation of nitrogen utilization	2.60E-03
70	GO:0015976: carbon utilization	2.60E-03
71	GO:0051322: anaphase	2.60E-03
72	GO:0019464: glycine decarboxylation via glycine cleavage system	2.60E-03
73	GO:0009765: photosynthesis, light harvesting	2.60E-03
74	GO:0006109: regulation of carbohydrate metabolic process	2.60E-03
75	GO:0045727: positive regulation of translation	2.60E-03
76	GO:0010600: regulation of auxin biosynthetic process	2.60E-03
77	GO:0006546: glycine catabolic process	2.60E-03
78	GO:0006552: leucine catabolic process	2.60E-03
79	GO:0010508: positive regulation of autophagy	2.60E-03
80	GO:0009644: response to high light intensity	2.80E-03
81	GO:0006810: transport	2.85E-03
82	GO:0016120: carotene biosynthetic process	3.32E-03
83	GO:0031365: N-terminal protein amino acid modification	3.32E-03
84	GO:0006097: glyoxylate cycle	3.32E-03
85	GO:0000304: response to singlet oxygen	3.32E-03
86	GO:0009635: response to herbicide	4.11E-03
87	GO:0009643: photosynthetic acclimation	4.11E-03
88	GO:0000470: maturation of LSU-rRNA	4.11E-03
89	GO:0042793: transcription from plastid promoter	4.11E-03
90	GO:0010190: cytochrome b6f complex assembly	4.11E-03
91	GO:0019252: starch biosynthetic process	4.62E-03
92	GO:1901259: chloroplast rRNA processing	4.95E-03
93	GO:0030488: tRNA methylation	4.95E-03
94	GO:0009955: adaxial/abaxial pattern specification	4.95E-03
95	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.95E-03
96	GO:0042026: protein refolding	4.95E-03
97	GO:0006458: 'de novo' protein folding	4.95E-03
98	GO:0022904: respiratory electron transport chain	5.85E-03
99	GO:0010103: stomatal complex morphogenesis	5.85E-03
100	GO:0010161: red light signaling pathway	5.85E-03
101	GO:0010196: nonphotochemical quenching	5.85E-03
102	GO:0070370: cellular heat acclimation	5.85E-03
103	GO:0009769: photosynthesis, light harvesting in photosystem II	5.85E-03
104	GO:0006353: DNA-templated transcription, termination	6.80E-03
105	GO:0009704: de-etiolation	6.80E-03
106	GO:0010928: regulation of auxin mediated signaling pathway	6.80E-03
107	GO:0005978: glycogen biosynthetic process	6.80E-03
108	GO:0030091: protein repair	6.80E-03
109	GO:0001558: regulation of cell growth	7.80E-03
110	GO:0009657: plastid organization	7.80E-03
111	GO:0006783: heme biosynthetic process	8.86E-03
112	GO:0051865: protein autoubiquitination	8.86E-03
113	GO:0006098: pentose-phosphate shunt	8.86E-03
114	GO:0009790: embryo development	9.42E-03
115	GO:0005982: starch metabolic process	9.96E-03
116	GO:0006779: porphyrin-containing compound biosynthetic process	9.96E-03
117	GO:0042761: very long-chain fatty acid biosynthetic process	9.96E-03
118	GO:0010218: response to far red light	1.03E-02
119	GO:0006979: response to oxidative stress	1.06E-02
120	GO:0009631: cold acclimation	1.08E-02
121	GO:0043069: negative regulation of programmed cell death	1.11E-02
122	GO:0048829: root cap development	1.11E-02
123	GO:0031627: telomeric loop formation	1.11E-02
124	GO:0009637: response to blue light	1.19E-02
125	GO:0006415: translational termination	1.23E-02
126	GO:0000272: polysaccharide catabolic process	1.23E-02
127	GO:0009750: response to fructose	1.23E-02
128	GO:0018119: peptidyl-cysteine S-nitrosylation	1.23E-02
129	GO:0010015: root morphogenesis	1.23E-02
130	GO:0009089: lysine biosynthetic process via diaminopimelate	1.23E-02
131	GO:0009073: aromatic amino acid family biosynthetic process	1.23E-02
132	GO:0043085: positive regulation of catalytic activity	1.23E-02
133	GO:0034599: cellular response to oxidative stress	1.24E-02
134	GO:0045037: protein import into chloroplast stroma	1.36E-02
135	GO:0071365: cellular response to auxin stimulus	1.36E-02
136	GO:0010628: positive regulation of gene expression	1.48E-02
137	GO:0006108: malate metabolic process	1.48E-02
138	GO:0030036: actin cytoskeleton organization	1.48E-02
139	GO:0010102: lateral root morphogenesis	1.48E-02
140	GO:0010114: response to red light	1.54E-02
141	GO:0019253: reductive pentose-phosphate cycle	1.62E-02
142	GO:0009266: response to temperature stimulus	1.62E-02
143	GO:0006302: double-strand break repair	1.62E-02
144	GO:0005985: sucrose metabolic process	1.75E-02
145	GO:0006636: unsaturated fatty acid biosynthetic process	1.89E-02
146	GO:0010025: wax biosynthetic process	1.89E-02
147	GO:0055114: oxidation-reduction process	1.99E-02
148	GO:0006289: nucleotide-excision repair	2.04E-02
149	GO:0009944: polarity specification of adaxial/abaxial axis	2.04E-02
150	GO:0006364: rRNA processing	2.08E-02
151	GO:0007017: microtubule-based process	2.19E-02
152	GO:0051302: regulation of cell division	2.19E-02
153	GO:0019915: lipid storage	2.34E-02
154	GO:0031408: oxylipin biosynthetic process	2.34E-02
155	GO:0051321: meiotic cell cycle	2.34E-02
156	GO:0006096: glycolytic process	2.46E-02
157	GO:0035428: hexose transmembrane transport	2.50E-02
158	GO:0019748: secondary metabolic process	2.50E-02
159	GO:0030245: cellulose catabolic process	2.50E-02
160	GO:0010017: red or far-red light signaling pathway	2.50E-02
161	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.50E-02
162	GO:0001944: vasculature development	2.65E-02
163	GO:0009686: gibberellin biosynthetic process	2.65E-02
164	GO:0010089: xylem development	2.82E-02
165	GO:0006284: base-excision repair	2.82E-02
166	GO:0016117: carotenoid biosynthetic process	2.98E-02
167	GO:0042631: cellular response to water deprivation	3.15E-02
168	GO:0006662: glycerol ether metabolic process	3.33E-02
169	GO:0048868: pollen tube development	3.33E-02
170	GO:0046323: glucose import	3.33E-02
171	GO:0009646: response to absence of light	3.50E-02
172	GO:0071554: cell wall organization or biogenesis	3.86E-02
173	GO:0000302: response to reactive oxygen species	3.86E-02
174	GO:0010583: response to cyclopentenone	4.05E-02
175	GO:1901657: glycosyl compound metabolic process	4.24E-02
176	GO:0009567: double fertilization forming a zygote and endosperm	4.43E-02
177	GO:0006633: fatty acid biosynthetic process	4.63E-02
178	GO:0000910: cytokinesis	4.82E-02
179	GO:0008152: metabolic process	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0048039: ubiquinone binding	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0016166: phytoene dehydrogenase activity	0.00E+00
10	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
11	GO:0019843: rRNA binding	3.82E-14
12	GO:0003735: structural constituent of ribosome	1.39E-08
13	GO:0031409: pigment binding	1.55E-07
14	GO:0010297: heteropolysaccharide binding	6.50E-06
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.50E-06
16	GO:0016168: chlorophyll binding	8.17E-06
17	GO:0016851: magnesium chelatase activity	4.98E-05
18	GO:0016279: protein-lysine N-methyltransferase activity	8.79E-05
19	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.79E-05
20	GO:0005528: FK506 binding	1.82E-04
21	GO:0004853: uroporphyrinogen decarboxylase activity	3.81E-04
22	GO:0042586: peptide deformylase activity	3.81E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	3.81E-04
24	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.81E-04
25	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.81E-04
26	GO:0005227: calcium activated cation channel activity	3.81E-04
27	GO:0008184: glycogen phosphorylase activity	3.81E-04
28	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	3.81E-04
29	GO:0080132: fatty acid alpha-hydroxylase activity	3.81E-04
30	GO:0004134: 4-alpha-glucanotransferase activity	3.81E-04
31	GO:0010242: oxygen evolving activity	3.81E-04
32	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.81E-04
33	GO:0004645: phosphorylase activity	3.81E-04
34	GO:0048038: quinone binding	6.10E-04
35	GO:0008967: phosphoglycolate phosphatase activity	8.27E-04
36	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.27E-04
37	GO:0033201: alpha-1,4-glucan synthase activity	8.27E-04
38	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.27E-04
39	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.27E-04
40	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.27E-04
41	GO:0044183: protein binding involved in protein folding	9.99E-04
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.34E-03
43	GO:0071917: triose-phosphate transmembrane transporter activity	1.34E-03
44	GO:0043169: cation binding	1.34E-03
45	GO:0004373: glycogen (starch) synthase activity	1.34E-03
46	GO:0017150: tRNA dihydrouridine synthase activity	1.34E-03
47	GO:0090729: toxin activity	1.34E-03
48	GO:0008266: poly(U) RNA binding	1.46E-03
49	GO:0043023: ribosomal large subunit binding	1.93E-03
50	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.93E-03
51	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.93E-03
52	GO:0016149: translation release factor activity, codon specific	1.93E-03
53	GO:0042277: peptide binding	2.60E-03
54	GO:0015120: phosphoglycerate transmembrane transporter activity	2.60E-03
55	GO:0009011: starch synthase activity	2.60E-03
56	GO:0019199: transmembrane receptor protein kinase activity	2.60E-03
57	GO:0030570: pectate lyase activity	2.92E-03
58	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.08E-03
59	GO:0008725: DNA-3-methyladenine glycosylase activity	3.32E-03
60	GO:0016615: malate dehydrogenase activity	4.11E-03
61	GO:2001070: starch binding	4.11E-03
62	GO:0004332: fructose-bisphosphate aldolase activity	4.11E-03
63	GO:0004130: cytochrome-c peroxidase activity	4.11E-03
64	GO:0030060: L-malate dehydrogenase activity	4.95E-03
65	GO:0004602: glutathione peroxidase activity	4.95E-03
66	GO:0005261: cation channel activity	4.95E-03
67	GO:0051920: peroxiredoxin activity	4.95E-03
68	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.95E-03
69	GO:0005200: structural constituent of cytoskeleton	6.37E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	6.80E-03
71	GO:0005337: nucleoside transmembrane transporter activity	6.80E-03
72	GO:0016209: antioxidant activity	6.80E-03
73	GO:0008173: RNA methyltransferase activity	7.80E-03
74	GO:0003747: translation release factor activity	8.86E-03
75	GO:0008047: enzyme activator activity	1.11E-02
76	GO:0003691: double-stranded telomeric DNA binding	1.23E-02
77	GO:0009055: electron carrier activity	1.36E-02
78	GO:0004022: alcohol dehydrogenase (NAD) activity	1.48E-02
79	GO:0004089: carbonate dehydratase activity	1.48E-02
80	GO:0031072: heat shock protein binding	1.48E-02
81	GO:0004565: beta-galactosidase activity	1.48E-02
82	GO:0016491: oxidoreductase activity	1.77E-02
83	GO:0000287: magnesium ion binding	1.98E-02
84	GO:0004857: enzyme inhibitor activity	2.04E-02
85	GO:0001046: core promoter sequence-specific DNA binding	2.04E-02
86	GO:0003964: RNA-directed DNA polymerase activity	2.34E-02
87	GO:0008408: 3'-5' exonuclease activity	2.34E-02
88	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.54E-02
89	GO:0022891: substrate-specific transmembrane transporter activity	2.65E-02
90	GO:0008810: cellulase activity	2.65E-02
91	GO:0003756: protein disulfide isomerase activity	2.82E-02
92	GO:0051082: unfolded protein binding	2.96E-02
93	GO:0047134: protein-disulfide reductase activity	2.98E-02
94	GO:0003723: RNA binding	3.03E-02
95	GO:0001085: RNA polymerase II transcription factor binding	3.33E-02
96	GO:0004791: thioredoxin-disulfide reductase activity	3.50E-02
97	GO:0005355: glucose transmembrane transporter activity	3.50E-02
98	GO:0050662: coenzyme binding	3.50E-02
99	GO:0016829: lyase activity	4.00E-02
100	GO:0030170: pyridoxal phosphate binding	4.10E-02
101	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.24E-02
102	GO:0003924: GTPase activity	4.31E-02
103	GO:0008483: transaminase activity	4.62E-02
104	GO:0016413: O-acetyltransferase activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0009507: chloroplast	8.13E-54
6	GO:0009534: chloroplast thylakoid	4.80E-44
7	GO:0009941: chloroplast envelope	1.04E-38
8	GO:0009570: chloroplast stroma	9.24E-38
9	GO:0009535: chloroplast thylakoid membrane	9.13E-37
10	GO:0009579: thylakoid	5.29E-25
11	GO:0010287: plastoglobule	8.44E-16
12	GO:0009543: chloroplast thylakoid lumen	1.06E-12
13	GO:0005840: ribosome	1.20E-10
14	GO:0031977: thylakoid lumen	4.35E-09
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.42E-09
16	GO:0030095: chloroplast photosystem II	7.94E-08
17	GO:0009522: photosystem I	1.83E-06
18	GO:0009508: plastid chromosome	3.02E-06
19	GO:0030076: light-harvesting complex	5.21E-06
20	GO:0009295: nucleoid	5.23E-06
21	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.50E-06
22	GO:0009654: photosystem II oxygen evolving complex	1.05E-05
23	GO:0009538: photosystem I reaction center	1.43E-05
24	GO:0009706: chloroplast inner membrane	2.06E-05
25	GO:0010007: magnesium chelatase complex	2.27E-05
26	GO:0019898: extrinsic component of membrane	4.82E-05
27	GO:0010319: stromule	8.90E-05
28	GO:0048046: apoplast	2.34E-04
29	GO:0031361: integral component of thylakoid membrane	3.81E-04
30	GO:0009782: photosystem I antenna complex	3.81E-04
31	GO:0000791: euchromatin	3.81E-04
32	GO:0009783: photosystem II antenna complex	3.81E-04
33	GO:0009501: amyloplast	4.31E-04
34	GO:0030870: Mre11 complex	8.27E-04
35	GO:0030093: chloroplast photosystem I	8.27E-04
36	GO:0033281: TAT protein transport complex	1.34E-03
37	GO:0009509: chromoplast	1.34E-03
38	GO:0009536: plastid	1.85E-03
39	GO:0005960: glycine cleavage complex	1.93E-03
40	GO:0042651: thylakoid membrane	2.22E-03
41	GO:0015935: small ribosomal subunit	2.44E-03
42	GO:0055035: plastid thylakoid membrane	3.32E-03
43	GO:0000795: synaptonemal complex	3.32E-03
44	GO:0009523: photosystem II	4.62E-03
45	GO:0031305: integral component of mitochondrial inner membrane	6.80E-03
46	GO:0000783: nuclear telomere cap complex	7.80E-03
47	GO:0045298: tubulin complex	8.86E-03
48	GO:0005763: mitochondrial small ribosomal subunit	8.86E-03
49	GO:0015934: large ribosomal subunit	1.08E-02
50	GO:0005740: mitochondrial envelope	1.11E-02
51	GO:0009574: preprophase band	1.48E-02
52	GO:0016020: membrane	1.71E-02
53	GO:0043234: protein complex	1.89E-02
54	GO:0005874: microtubule	2.55E-02
55	GO:0031969: chloroplast membrane	2.66E-02
56	GO:0000785: chromatin	4.05E-02