co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G07340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0005996: monosaccharide metabolic process	0.00E+00
8	GO:0090042: tubulin deacetylation	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:0015979: photosynthesis	7.88E-20
11	GO:0032544: plastid translation	2.75E-12
12	GO:0010027: thylakoid membrane organization	9.95E-10
13	GO:0006412: translation	2.45E-08
14	GO:0009773: photosynthetic electron transport in photosystem I	4.21E-07
15	GO:0015995: chlorophyll biosynthetic process	2.34E-06
16	GO:0009735: response to cytokinin	2.73E-06
17	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.96E-06
18	GO:0010206: photosystem II repair	1.04E-05
19	GO:0006000: fructose metabolic process	1.07E-05
20	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.42E-05
21	GO:0019464: glycine decarboxylation via glycine cleavage system	4.39E-05
22	GO:0009658: chloroplast organization	5.70E-05
23	GO:0042254: ribosome biogenesis	5.98E-05
24	GO:0061077: chaperone-mediated protein folding	1.02E-04
25	GO:0009409: response to cold	1.44E-04
26	GO:1904966: positive regulation of vitamin E biosynthetic process	2.53E-04
27	GO:0010480: microsporocyte differentiation	2.53E-04
28	GO:1904964: positive regulation of phytol biosynthetic process	2.53E-04
29	GO:0042371: vitamin K biosynthetic process	2.53E-04
30	GO:0065002: intracellular protein transmembrane transport	2.53E-04
31	GO:0043007: maintenance of rDNA	2.53E-04
32	GO:1902458: positive regulation of stomatal opening	2.53E-04
33	GO:0043953: protein transport by the Tat complex	2.53E-04
34	GO:0006002: fructose 6-phosphate metabolic process	2.90E-04
35	GO:0006782: protoporphyrinogen IX biosynthetic process	4.86E-04
36	GO:0018026: peptidyl-lysine monomethylation	5.59E-04
37	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.59E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.59E-04
39	GO:0019388: galactose catabolic process	5.59E-04
40	GO:0018298: protein-chromophore linkage	6.42E-04
41	GO:0005983: starch catabolic process	6.42E-04
42	GO:0006810: transport	6.62E-04
43	GO:0006094: gluconeogenesis	7.28E-04
44	GO:0005986: sucrose biosynthetic process	7.28E-04
45	GO:0010207: photosystem II assembly	8.19E-04
46	GO:0016050: vesicle organization	9.07E-04
47	GO:0048281: inflorescence morphogenesis	9.07E-04
48	GO:0006954: inflammatory response	9.07E-04
49	GO:0009768: photosynthesis, light harvesting in photosystem I	1.23E-03
50	GO:0009590: detection of gravity	1.29E-03
51	GO:0071484: cellular response to light intensity	1.29E-03
52	GO:0010148: transpiration	1.29E-03
53	GO:0010731: protein glutathionylation	1.29E-03
54	GO:0015976: carbon utilization	1.73E-03
55	GO:0009765: photosynthesis, light harvesting	1.73E-03
56	GO:0006109: regulation of carbohydrate metabolic process	1.73E-03
57	GO:0045727: positive regulation of translation	1.73E-03
58	GO:0015994: chlorophyll metabolic process	1.73E-03
59	GO:0006552: leucine catabolic process	1.73E-03
60	GO:0006546: glycine catabolic process	1.73E-03
61	GO:0010236: plastoquinone biosynthetic process	2.21E-03
62	GO:0045038: protein import into chloroplast thylakoid membrane	2.21E-03
63	GO:0000304: response to singlet oxygen	2.21E-03
64	GO:0042549: photosystem II stabilization	2.72E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.72E-03
66	GO:0010190: cytochrome b6f complex assembly	2.72E-03
67	GO:0042742: defense response to bacterium	3.16E-03
68	GO:0006458: 'de novo' protein folding	3.27E-03
69	GO:0009955: adaxial/abaxial pattern specification	3.27E-03
70	GO:0042026: protein refolding	3.27E-03
71	GO:0042372: phylloquinone biosynthetic process	3.27E-03
72	GO:1901259: chloroplast rRNA processing	3.27E-03
73	GO:0009645: response to low light intensity stimulus	3.86E-03
74	GO:0022904: respiratory electron transport chain	3.86E-03
75	GO:0010103: stomatal complex morphogenesis	3.86E-03
76	GO:0009772: photosynthetic electron transport in photosystem II	3.86E-03
77	GO:0048437: floral organ development	3.86E-03
78	GO:0070370: cellular heat acclimation	3.86E-03
79	GO:0009790: embryo development	4.36E-03
80	GO:2000070: regulation of response to water deprivation	4.48E-03
81	GO:0000105: histidine biosynthetic process	4.48E-03
82	GO:0005978: glycogen biosynthetic process	4.48E-03
83	GO:0016311: dephosphorylation	4.86E-03
84	GO:0015996: chlorophyll catabolic process	5.13E-03
85	GO:0007186: G-protein coupled receptor signaling pathway	5.13E-03
86	GO:0001558: regulation of cell growth	5.13E-03
87	GO:0006783: heme biosynthetic process	5.81E-03
88	GO:0010205: photoinhibition	6.52E-03
89	GO:0006779: porphyrin-containing compound biosynthetic process	6.52E-03
90	GO:0000272: polysaccharide catabolic process	8.04E-03
91	GO:0009750: response to fructose	8.04E-03
92	GO:0018119: peptidyl-cysteine S-nitrosylation	8.04E-03
93	GO:0048229: gametophyte development	8.04E-03
94	GO:0019684: photosynthesis, light reaction	8.04E-03
95	GO:0006415: translational termination	8.04E-03
96	GO:0009089: lysine biosynthetic process via diaminopimelate	8.04E-03
97	GO:0009073: aromatic amino acid family biosynthetic process	8.04E-03
98	GO:0043085: positive regulation of catalytic activity	8.04E-03
99	GO:0045037: protein import into chloroplast stroma	8.83E-03
100	GO:0006006: glucose metabolic process	9.66E-03
101	GO:0010075: regulation of meristem growth	9.66E-03
102	GO:0009767: photosynthetic electron transport chain	9.66E-03
103	GO:0009266: response to temperature stimulus	1.05E-02
104	GO:0009934: regulation of meristem structural organization	1.05E-02
105	GO:0006302: double-strand break repair	1.05E-02
106	GO:0019253: reductive pentose-phosphate cycle	1.05E-02
107	GO:0006364: rRNA processing	1.13E-02
108	GO:0005985: sucrose metabolic process	1.14E-02
109	GO:0006636: unsaturated fatty acid biosynthetic process	1.23E-02
110	GO:0000162: tryptophan biosynthetic process	1.23E-02
111	GO:0006289: nucleotide-excision repair	1.32E-02
112	GO:0009944: polarity specification of adaxial/abaxial axis	1.32E-02
113	GO:0051302: regulation of cell division	1.42E-02
114	GO:0016575: histone deacetylation	1.42E-02
115	GO:0019915: lipid storage	1.52E-02
116	GO:0031408: oxylipin biosynthetic process	1.52E-02
117	GO:0051321: meiotic cell cycle	1.52E-02
118	GO:0045454: cell redox homeostasis	1.56E-02
119	GO:0001944: vasculature development	1.72E-02
120	GO:0009686: gibberellin biosynthetic process	1.72E-02
121	GO:0009561: megagametogenesis	1.83E-02
122	GO:0048653: anther development	2.05E-02
123	GO:0042631: cellular response to water deprivation	2.05E-02
124	GO:0006662: glycerol ether metabolic process	2.16E-02
125	GO:0010182: sugar mediated signaling pathway	2.16E-02
126	GO:0006520: cellular amino acid metabolic process	2.16E-02
127	GO:0009646: response to absence of light	2.27E-02
128	GO:0019252: starch biosynthetic process	2.39E-02
129	GO:0071554: cell wall organization or biogenesis	2.51E-02
130	GO:0009567: double fertilization forming a zygote and endosperm	2.87E-02
131	GO:0009817: defense response to fungus, incompatible interaction	3.93E-02
132	GO:0009813: flavonoid biosynthetic process	4.08E-02
133	GO:0010218: response to far red light	4.22E-02
134	GO:0006499: N-terminal protein myristoylation	4.22E-02
135	GO:0009793: embryo development ending in seed dormancy	4.33E-02
136	GO:0009637: response to blue light	4.66E-02
137	GO:0009853: photorespiration	4.66E-02
138	GO:0034599: cellular response to oxidative stress	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0043014: alpha-tubulin binding	0.00E+00
2	GO:0048039: ubiquinone binding	0.00E+00
3	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
6	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
7	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
8	GO:0051721: protein phosphatase 2A binding	0.00E+00
9	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
10	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
11	GO:0042903: tubulin deacetylase activity	0.00E+00
12	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
13	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
14	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
15	GO:0019843: rRNA binding	1.84E-17
16	GO:0003735: structural constituent of ribosome	1.35E-09
17	GO:0005528: FK506 binding	2.31E-06
18	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.96E-06
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.59E-05
20	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.42E-05
21	GO:0031072: heat shock protein binding	3.71E-05
22	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.39E-05
23	GO:0019203: carbohydrate phosphatase activity	2.53E-04
24	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.53E-04
25	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.53E-04
26	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.53E-04
27	GO:0050308: sugar-phosphatase activity	2.53E-04
28	GO:0004853: uroporphyrinogen decarboxylase activity	2.53E-04
29	GO:0048038: quinone binding	2.81E-04
30	GO:0051082: unfolded protein binding	4.35E-04
31	GO:0016168: chlorophyll binding	4.92E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.59E-04
33	GO:0047746: chlorophyllase activity	5.59E-04
34	GO:0042389: omega-3 fatty acid desaturase activity	5.59E-04
35	GO:0010297: heteropolysaccharide binding	5.59E-04
36	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.59E-04
37	GO:0030385: ferredoxin:thioredoxin reductase activity	5.59E-04
38	GO:0008967: phosphoglycolate phosphatase activity	5.59E-04
39	GO:0004614: phosphoglucomutase activity	5.59E-04
40	GO:0045174: glutathione dehydrogenase (ascorbate) activity	9.07E-04
41	GO:0004324: ferredoxin-NADP+ reductase activity	9.07E-04
42	GO:0005504: fatty acid binding	9.07E-04
43	GO:0031409: pigment binding	1.01E-03
44	GO:0048487: beta-tubulin binding	1.29E-03
45	GO:0016149: translation release factor activity, codon specific	1.29E-03
46	GO:0043023: ribosomal large subunit binding	1.29E-03
47	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.29E-03
48	GO:0016851: magnesium chelatase activity	1.29E-03
49	GO:0042277: peptide binding	1.73E-03
50	GO:0004659: prenyltransferase activity	1.73E-03
51	GO:0016279: protein-lysine N-methyltransferase activity	1.73E-03
52	GO:0080032: methyl jasmonate esterase activity	1.73E-03
53	GO:0019199: transmembrane receptor protein kinase activity	1.73E-03
54	GO:0043495: protein anchor	1.73E-03
55	GO:0045430: chalcone isomerase activity	1.73E-03
56	GO:0000287: magnesium ion binding	1.88E-03
57	GO:0003959: NADPH dehydrogenase activity	2.21E-03
58	GO:2001070: starch binding	2.72E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	2.72E-03
60	GO:0051920: peroxiredoxin activity	3.27E-03
61	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.27E-03
62	GO:0019899: enzyme binding	3.86E-03
63	GO:0016209: antioxidant activity	4.48E-03
64	GO:0004033: aldo-keto reductase (NADP) activity	4.48E-03
65	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.13E-03
66	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.13E-03
67	GO:0009055: electron carrier activity	5.41E-03
68	GO:0003747: translation release factor activity	5.81E-03
69	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.81E-03
70	GO:0030145: manganese ion binding	5.91E-03
71	GO:0008047: enzyme activator activity	7.26E-03
72	GO:0044183: protein binding involved in protein folding	8.04E-03
73	GO:0005509: calcium ion binding	9.14E-03
74	GO:0004089: carbonate dehydratase activity	9.66E-03
75	GO:0004565: beta-galactosidase activity	9.66E-03
76	GO:0008266: poly(U) RNA binding	1.05E-02
77	GO:0004857: enzyme inhibitor activity	1.32E-02
78	GO:0004407: histone deacetylase activity	1.32E-02
79	GO:0033612: receptor serine/threonine kinase binding	1.52E-02
80	GO:0008408: 3'-5' exonuclease activity	1.52E-02
81	GO:0022891: substrate-specific transmembrane transporter activity	1.72E-02
82	GO:0003756: protein disulfide isomerase activity	1.83E-02
83	GO:0047134: protein-disulfide reductase activity	1.94E-02
84	GO:0004252: serine-type endopeptidase activity	2.24E-02
85	GO:0050662: coenzyme binding	2.27E-02
86	GO:0004791: thioredoxin-disulfide reductase activity	2.27E-02
87	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.75E-02
88	GO:0008483: transaminase activity	3.00E-02
89	GO:0016413: O-acetyltransferase activity	3.13E-02
90	GO:0008236: serine-type peptidase activity	3.80E-02
91	GO:0016788: hydrolase activity, acting on ester bonds	4.38E-02
92	GO:0003993: acid phosphatase activity	4.80E-02
93	GO:0016491: oxidoreductase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
4	GO:0009507: chloroplast	8.53E-80
5	GO:0009535: chloroplast thylakoid membrane	1.61E-45
6	GO:0009570: chloroplast stroma	1.77E-43
7	GO:0009941: chloroplast envelope	2.29E-41
8	GO:0009534: chloroplast thylakoid	1.35E-34
9	GO:0009579: thylakoid	4.97E-27
10	GO:0009543: chloroplast thylakoid lumen	1.55E-22
11	GO:0031977: thylakoid lumen	3.75E-15
12	GO:0005840: ribosome	1.33E-11
13	GO:0030095: chloroplast photosystem II	1.65E-10
14	GO:0010287: plastoglobule	6.54E-10
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.03E-09
16	GO:0010319: stromule	2.93E-08
17	GO:0009538: photosystem I reaction center	4.76E-08
18	GO:0009654: photosystem II oxygen evolving complex	5.48E-08
19	GO:0019898: extrinsic component of membrane	4.51E-07
20	GO:0005960: glycine cleavage complex	2.42E-05
21	GO:0031361: integral component of thylakoid membrane	2.53E-04
22	GO:0009782: photosystem I antenna complex	2.53E-04
23	GO:0000791: euchromatin	2.53E-04
24	GO:0009523: photosystem II	2.56E-04
25	GO:0009295: nucleoid	3.93E-04
26	GO:0030870: Mre11 complex	5.59E-04
27	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.59E-04
28	GO:0009508: plastid chromosome	7.28E-04
29	GO:0048046: apoplast	7.54E-04
30	GO:0015934: large ribosomal subunit	7.70E-04
31	GO:0009528: plastid inner membrane	9.07E-04
32	GO:0010007: magnesium chelatase complex	9.07E-04
33	GO:0033281: TAT protein transport complex	9.07E-04
34	GO:0030076: light-harvesting complex	9.14E-04
35	GO:0042651: thylakoid membrane	1.23E-03
36	GO:0015935: small ribosomal subunit	1.35E-03
37	GO:0009532: plastid stroma	1.35E-03
38	GO:0009536: plastid	1.44E-03
39	GO:0009527: plastid outer membrane	1.73E-03
40	GO:0000795: synaptonemal complex	2.21E-03
41	GO:0009522: photosystem I	2.37E-03
42	GO:0031969: chloroplast membrane	2.69E-03
43	GO:0009706: chloroplast inner membrane	2.69E-03
44	GO:0009840: chloroplastic endopeptidase Clp complex	3.27E-03
45	GO:0009533: chloroplast stromal thylakoid	3.86E-03
46	GO:0031305: integral component of mitochondrial inner membrane	4.48E-03
47	GO:0005763: mitochondrial small ribosomal subunit	5.81E-03
48	GO:0005740: mitochondrial envelope	7.26E-03
49	GO:0043234: protein complex	1.23E-02
50	GO:0000785: chromatin	2.63E-02
51	GO:0009707: chloroplast outer membrane	3.93E-02
52	GO:0016020: membrane	4.87E-02