co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G07000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030155: regulation of cell adhesion	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0007172: signal complex assembly	0.00E+00
5	GO:0090279: regulation of calcium ion import	0.00E+00
6	GO:0080127: fruit septum development	0.00E+00
7	GO:0015717: triose phosphate transport	0.00E+00
8	GO:0015727: lactate transport	0.00E+00
9	GO:0071474: cellular hyperosmotic response	0.00E+00
10	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
11	GO:0002184: cytoplasmic translational termination	0.00E+00
12	GO:0010027: thylakoid membrane organization	1.01E-07
13	GO:0009773: photosynthetic electron transport in photosystem I	7.68E-07
14	GO:0015979: photosynthesis	4.38E-06
15	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.35E-05
16	GO:0015995: chlorophyll biosynthetic process	8.16E-05
17	GO:0005980: glycogen catabolic process	3.04E-04
18	GO:0043953: protein transport by the Tat complex	3.04E-04
19	GO:0065002: intracellular protein transmembrane transport	3.04E-04
20	GO:0043007: maintenance of rDNA	3.04E-04
21	GO:0032544: plastid translation	3.80E-04
22	GO:0018026: peptidyl-lysine monomethylation	6.66E-04
23	GO:0090342: regulation of cell aging	6.66E-04
24	GO:0031648: protein destabilization	6.66E-04
25	GO:0006521: regulation of cellular amino acid metabolic process	6.66E-04
26	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.66E-04
27	GO:0080181: lateral root branching	6.66E-04
28	GO:0051262: protein tetramerization	6.66E-04
29	GO:0005983: starch catabolic process	8.31E-04
30	GO:0048281: inflorescence morphogenesis	1.08E-03
31	GO:0006000: fructose metabolic process	1.08E-03
32	GO:0009405: pathogenesis	1.08E-03
33	GO:0035436: triose phosphate transmembrane transport	1.08E-03
34	GO:0016050: vesicle organization	1.08E-03
35	GO:0006810: transport	1.27E-03
36	GO:0010148: transpiration	1.55E-03
37	GO:1901332: negative regulation of lateral root development	1.55E-03
38	GO:0061077: chaperone-mediated protein folding	1.76E-03
39	GO:0051322: anaphase	2.07E-03
40	GO:0010600: regulation of auxin biosynthetic process	2.07E-03
41	GO:0006552: leucine catabolic process	2.07E-03
42	GO:0051205: protein insertion into membrane	2.07E-03
43	GO:0015846: polyamine transport	2.07E-03
44	GO:0015713: phosphoglycerate transport	2.07E-03
45	GO:0010021: amylopectin biosynthetic process	2.07E-03
46	GO:0006808: regulation of nitrogen utilization	2.07E-03
47	GO:0015976: carbon utilization	2.07E-03
48	GO:0000304: response to singlet oxygen	2.65E-03
49	GO:0016120: carotene biosynthetic process	2.65E-03
50	GO:0045038: protein import into chloroplast thylakoid membrane	2.65E-03
51	GO:0009658: chloroplast organization	2.92E-03
52	GO:0000470: maturation of LSU-rRNA	3.27E-03
53	GO:0042793: transcription from plastid promoter	3.27E-03
54	GO:0010190: cytochrome b6f complex assembly	3.27E-03
55	GO:0003006: developmental process involved in reproduction	3.27E-03
56	GO:0009643: photosynthetic acclimation	3.27E-03
57	GO:0009635: response to herbicide	3.27E-03
58	GO:0042549: photosystem II stabilization	3.27E-03
59	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.93E-03
60	GO:0042026: protein refolding	3.93E-03
61	GO:0042372: phylloquinone biosynthetic process	3.93E-03
62	GO:0006458: 'de novo' protein folding	3.93E-03
63	GO:0030488: tRNA methylation	3.93E-03
64	GO:0009769: photosynthesis, light harvesting in photosystem II	4.64E-03
65	GO:0070370: cellular heat acclimation	4.64E-03
66	GO:0022904: respiratory electron transport chain	4.64E-03
67	GO:0010103: stomatal complex morphogenesis	4.64E-03
68	GO:0010161: red light signaling pathway	4.64E-03
69	GO:0010928: regulation of auxin mediated signaling pathway	5.39E-03
70	GO:0005978: glycogen biosynthetic process	5.39E-03
71	GO:0009704: de-etiolation	5.39E-03
72	GO:0006002: fructose 6-phosphate metabolic process	6.18E-03
73	GO:0001558: regulation of cell growth	6.18E-03
74	GO:0006526: arginine biosynthetic process	6.18E-03
75	GO:0016311: dephosphorylation	6.36E-03
76	GO:0048507: meristem development	7.01E-03
77	GO:0051865: protein autoubiquitination	7.01E-03
78	GO:0010206: photosystem II repair	7.01E-03
79	GO:0006783: heme biosynthetic process	7.01E-03
80	GO:0009631: cold acclimation	7.74E-03
81	GO:0010205: photoinhibition	7.87E-03
82	GO:0005982: starch metabolic process	7.87E-03
83	GO:0006782: protoporphyrinogen IX biosynthetic process	8.77E-03
84	GO:0048829: root cap development	8.77E-03
85	GO:0031627: telomeric loop formation	8.77E-03
86	GO:0019684: photosynthesis, light reaction	9.71E-03
87	GO:0006415: translational termination	9.71E-03
88	GO:0009089: lysine biosynthetic process via diaminopimelate	9.71E-03
89	GO:0009073: aromatic amino acid family biosynthetic process	9.71E-03
90	GO:0009750: response to fructose	9.71E-03
91	GO:0010015: root morphogenesis	9.71E-03
92	GO:0010582: floral meristem determinacy	1.07E-02
93	GO:0071365: cellular response to auxin stimulus	1.07E-02
94	GO:0010628: positive regulation of gene expression	1.17E-02
95	GO:0018107: peptidyl-threonine phosphorylation	1.17E-02
96	GO:0006094: gluconeogenesis	1.17E-02
97	GO:0005986: sucrose biosynthetic process	1.17E-02
98	GO:0048467: gynoecium development	1.27E-02
99	GO:0010207: photosystem II assembly	1.27E-02
100	GO:0009266: response to temperature stimulus	1.27E-02
101	GO:0009934: regulation of meristem structural organization	1.27E-02
102	GO:0006302: double-strand break repair	1.27E-02
103	GO:0042254: ribosome biogenesis	1.36E-02
104	GO:0010030: positive regulation of seed germination	1.38E-02
105	GO:0006636: unsaturated fatty acid biosynthetic process	1.49E-02
106	GO:0009735: response to cytokinin	1.53E-02
107	GO:0009944: polarity specification of adaxial/abaxial axis	1.60E-02
108	GO:0042742: defense response to bacterium	1.68E-02
109	GO:0006418: tRNA aminoacylation for protein translation	1.72E-02
110	GO:0009768: photosynthesis, light harvesting in photosystem I	1.72E-02
111	GO:0051302: regulation of cell division	1.72E-02
112	GO:0019915: lipid storage	1.84E-02
113	GO:0031408: oxylipin biosynthetic process	1.84E-02
114	GO:0051321: meiotic cell cycle	1.84E-02
115	GO:0003333: amino acid transmembrane transport	1.84E-02
116	GO:0010017: red or far-red light signaling pathway	1.96E-02
117	GO:0035428: hexose transmembrane transport	1.96E-02
118	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.96E-02
119	GO:0019748: secondary metabolic process	1.96E-02
120	GO:0030245: cellulose catabolic process	1.96E-02
121	GO:0009686: gibberellin biosynthetic process	2.09E-02
122	GO:0001944: vasculature development	2.09E-02
123	GO:0006284: base-excision repair	2.22E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.35E-02
125	GO:0016117: carotenoid biosynthetic process	2.35E-02
126	GO:0006412: translation	2.44E-02
127	GO:0042631: cellular response to water deprivation	2.48E-02
128	GO:0006520: cellular amino acid metabolic process	2.62E-02
129	GO:0046323: glucose import	2.62E-02
130	GO:0009646: response to absence of light	2.76E-02
131	GO:0019252: starch biosynthetic process	2.90E-02
132	GO:0071554: cell wall organization or biogenesis	3.04E-02
133	GO:0009790: embryo development	3.09E-02
134	GO:0010583: response to cyclopentenone	3.19E-02
135	GO:0008152: metabolic process	3.21E-02
136	GO:0071281: cellular response to iron ion	3.33E-02
137	GO:1901657: glycosyl compound metabolic process	3.33E-02
138	GO:0009567: double fertilization forming a zygote and endosperm	3.49E-02
139	GO:0045490: pectin catabolic process	3.65E-02
140	GO:0000910: cytokinesis	3.79E-02
141	GO:0001666: response to hypoxia	3.95E-02
142	GO:0009627: systemic acquired resistance	4.27E-02
143	GO:0009817: defense response to fungus, incompatible interaction	4.77E-02
144	GO:0018298: protein-chromophore linkage	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
7	GO:0048039: ubiquinone binding	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0009899: ent-kaurene synthase activity	0.00E+00
10	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
11	GO:0015129: lactate transmembrane transporter activity	0.00E+00
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	6.01E-05
13	GO:0019843: rRNA binding	1.48E-04
14	GO:0008184: glycogen phosphorylase activity	3.04E-04
15	GO:0050308: sugar-phosphatase activity	3.04E-04
16	GO:0004853: uroporphyrinogen decarboxylase activity	3.04E-04
17	GO:0045485: omega-6 fatty acid desaturase activity	3.04E-04
18	GO:0004645: phosphorylase activity	3.04E-04
19	GO:0019203: carbohydrate phosphatase activity	3.04E-04
20	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	3.04E-04
21	GO:0005227: calcium activated cation channel activity	3.04E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.66E-04
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.66E-04
24	GO:0018708: thiol S-methyltransferase activity	6.66E-04
25	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.66E-04
26	GO:0008967: phosphoglycolate phosphatase activity	6.66E-04
27	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.66E-04
28	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.66E-04
29	GO:0043169: cation binding	1.08E-03
30	GO:0017150: tRNA dihydrouridine synthase activity	1.08E-03
31	GO:0090729: toxin activity	1.08E-03
32	GO:0071917: triose-phosphate transmembrane transporter activity	1.08E-03
33	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.08E-03
34	GO:0005528: FK506 binding	1.45E-03
35	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.55E-03
36	GO:0019201: nucleotide kinase activity	1.55E-03
37	GO:0015203: polyamine transmembrane transporter activity	1.55E-03
38	GO:0016851: magnesium chelatase activity	1.55E-03
39	GO:0016149: translation release factor activity, codon specific	1.55E-03
40	GO:0043023: ribosomal large subunit binding	1.55E-03
41	GO:0043621: protein self-association	1.83E-03
42	GO:0019199: transmembrane receptor protein kinase activity	2.07E-03
43	GO:0042277: peptide binding	2.07E-03
44	GO:0015120: phosphoglycerate transmembrane transporter activity	2.07E-03
45	GO:0016279: protein-lysine N-methyltransferase activity	2.07E-03
46	GO:0030570: pectate lyase activity	2.10E-03
47	GO:0008725: DNA-3-methyladenine glycosylase activity	2.65E-03
48	GO:0016208: AMP binding	3.27E-03
49	GO:2001070: starch binding	3.27E-03
50	GO:0048038: quinone binding	3.55E-03
51	GO:0005261: cation channel activity	3.93E-03
52	GO:0004017: adenylate kinase activity	3.93E-03
53	GO:0051920: peroxiredoxin activity	3.93E-03
54	GO:0004033: aldo-keto reductase (NADP) activity	5.39E-03
55	GO:0005337: nucleoside transmembrane transporter activity	5.39E-03
56	GO:0016209: antioxidant activity	5.39E-03
57	GO:0008173: RNA methyltransferase activity	6.18E-03
58	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.01E-03
59	GO:0003747: translation release factor activity	7.01E-03
60	GO:0003735: structural constituent of ribosome	7.47E-03
61	GO:0015174: basic amino acid transmembrane transporter activity	7.87E-03
62	GO:0009055: electron carrier activity	8.17E-03
63	GO:0016491: oxidoreductase activity	9.25E-03
64	GO:0003691: double-stranded telomeric DNA binding	9.71E-03
65	GO:0044183: protein binding involved in protein folding	9.71E-03
66	GO:0047372: acylglycerol lipase activity	9.71E-03
67	GO:0008378: galactosyltransferase activity	1.07E-02
68	GO:0004565: beta-galactosidase activity	1.17E-02
69	GO:0004089: carbonate dehydratase activity	1.17E-02
70	GO:0031072: heat shock protein binding	1.17E-02
71	GO:0051537: 2 iron, 2 sulfur cluster binding	1.19E-02
72	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.28E-02
73	GO:0000287: magnesium ion binding	1.30E-02
74	GO:0031409: pigment binding	1.49E-02
75	GO:0033612: receptor serine/threonine kinase binding	1.84E-02
76	GO:0008408: 3'-5' exonuclease activity	1.84E-02
77	GO:0008810: cellulase activity	2.09E-02
78	GO:0022891: substrate-specific transmembrane transporter activity	2.09E-02
79	GO:0051082: unfolded protein binding	2.11E-02
80	GO:0003756: protein disulfide isomerase activity	2.22E-02
81	GO:0016787: hydrolase activity	2.35E-02
82	GO:0004812: aminoacyl-tRNA ligase activity	2.35E-02
83	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.64E-02
84	GO:0005355: glucose transmembrane transporter activity	2.76E-02
85	GO:0016829: lyase activity	2.86E-02
86	GO:0015297: antiporter activity	3.49E-02
87	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.64E-02
88	GO:0016413: O-acetyltransferase activity	3.79E-02
89	GO:0016597: amino acid binding	3.79E-02
90	GO:0015250: water channel activity	3.95E-02
91	GO:0016168: chlorophyll binding	4.11E-02
92	GO:0102483: scopolin beta-glucosidase activity	4.44E-02
93	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	9.35E-28
5	GO:0009534: chloroplast thylakoid	4.66E-24
6	GO:0009535: chloroplast thylakoid membrane	1.05E-20
7	GO:0009570: chloroplast stroma	6.22E-15
8	GO:0009941: chloroplast envelope	7.47E-13
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.37E-07
10	GO:0009579: thylakoid	3.45E-07
11	GO:0009543: chloroplast thylakoid lumen	1.54E-05
12	GO:0010287: plastoglobule	1.32E-04
13	GO:0000791: euchromatin	3.04E-04
14	GO:0031361: integral component of thylakoid membrane	3.04E-04
15	GO:0009538: photosystem I reaction center	3.09E-04
16	GO:0009295: nucleoid	5.53E-04
17	GO:0009706: chloroplast inner membrane	6.58E-04
18	GO:0030870: Mre11 complex	6.66E-04
19	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.66E-04
20	GO:0009508: plastid chromosome	9.40E-04
21	GO:0030095: chloroplast photosystem II	1.06E-03
22	GO:0010007: magnesium chelatase complex	1.08E-03
23	GO:0009509: chromoplast	1.08E-03
24	GO:0033281: TAT protein transport complex	1.08E-03
25	GO:0031977: thylakoid lumen	1.49E-03
26	GO:0009654: photosystem II oxygen evolving complex	1.60E-03
27	GO:0042651: thylakoid membrane	1.60E-03
28	GO:0005840: ribosome	1.85E-03
29	GO:0000795: synaptonemal complex	2.65E-03
30	GO:0019898: extrinsic component of membrane	3.31E-03
31	GO:0031969: chloroplast membrane	4.06E-03
32	GO:0031305: integral component of mitochondrial inner membrane	5.39E-03
33	GO:0009501: amyloplast	5.39E-03
34	GO:0000783: nuclear telomere cap complex	6.18E-03
35	GO:0005740: mitochondrial envelope	8.77E-03
36	GO:0009574: preprophase band	1.17E-02
37	GO:0030076: light-harvesting complex	1.38E-02
38	GO:0043234: protein complex	1.49E-02
39	GO:0009536: plastid	2.38E-02
40	GO:0009522: photosystem I	2.76E-02
41	GO:0009523: photosystem II	2.90E-02
42	GO:0000785: chromatin	3.19E-02
43	GO:0005778: peroxisomal membrane	3.64E-02
44	GO:0010319: stromule	3.64E-02