co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G06520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
2	GO:0090391: granum assembly	7.38E-08
3	GO:0015979: photosynthesis	9.72E-08
4	GO:0018298: protein-chromophore linkage	2.08E-06
5	GO:1904966: positive regulation of vitamin E biosynthetic process	1.48E-05
6	GO:1904964: positive regulation of phytol biosynthetic process	1.48E-05
7	GO:1902458: positive regulation of stomatal opening	1.48E-05
8	GO:0009768: photosynthesis, light harvesting in photosystem I	2.38E-05
9	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.88E-05
10	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.88E-05
11	GO:0010027: thylakoid membrane organization	9.42E-05
12	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.05E-04
13	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.05E-04
14	GO:0010218: response to far red light	1.41E-04
15	GO:0006546: glycine catabolic process	1.45E-04
16	GO:0009765: photosynthesis, light harvesting	1.45E-04
17	GO:0015994: chlorophyll metabolic process	1.45E-04
18	GO:0009637: response to blue light	1.63E-04
19	GO:0010236: plastoquinone biosynthetic process	1.88E-04
20	GO:0045038: protein import into chloroplast thylakoid membrane	1.88E-04
21	GO:0010114: response to red light	2.14E-04
22	GO:0010189: vitamin E biosynthetic process	2.82E-04
23	GO:0010196: nonphotochemical quenching	3.32E-04
24	GO:2000070: regulation of response to water deprivation	3.84E-04
25	GO:0048564: photosystem I assembly	3.84E-04
26	GO:0032544: plastid translation	4.37E-04
27	GO:0015996: chlorophyll catabolic process	4.37E-04
28	GO:0007186: G-protein coupled receptor signaling pathway	4.37E-04
29	GO:0019684: photosynthesis, light reaction	6.67E-04
30	GO:0045037: protein import into chloroplast stroma	7.29E-04
31	GO:0010207: photosystem II assembly	8.55E-04
32	GO:0019953: sexual reproduction	1.12E-03
33	GO:0019915: lipid storage	1.19E-03
34	GO:0080167: response to karrikin	1.29E-03
35	GO:0010182: sugar mediated signaling pathway	1.65E-03
36	GO:0032259: methylation	1.81E-03
37	GO:0015995: chlorophyll biosynthetic process	2.70E-03
38	GO:0009817: defense response to fungus, incompatible interaction	2.90E-03
39	GO:0009735: response to cytokinin	3.03E-03
40	GO:0009853: photorespiration	3.40E-03
41	GO:0009658: chloroplast organization	1.25E-02
42	GO:0042254: ribosome biogenesis	1.27E-02
43	GO:0045893: positive regulation of transcription, DNA-templated	3.20E-02
44	GO:0055085: transmembrane transport	3.44E-02
45	GO:0006412: translation	3.49E-02
46	GO:0042742: defense response to bacterium	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
2	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
5	GO:0016168: chlorophyll binding	1.43E-06
6	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.48E-05
7	GO:0031409: pigment binding	1.85E-05
8	GO:0047746: chlorophyllase activity	3.88E-05
9	GO:0004047: aminomethyltransferase activity	3.88E-05
10	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.45E-04
11	GO:0008453: alanine-glyoxylate transaminase activity	1.45E-04
12	GO:0080032: methyl jasmonate esterase activity	1.45E-04
13	GO:0043495: protein anchor	1.45E-04
14	GO:0080030: methyl indole-3-acetate esterase activity	2.34E-04
15	GO:0019899: enzyme binding	3.32E-04
16	GO:0019843: rRNA binding	5.13E-04
17	GO:0008266: poly(U) RNA binding	8.55E-04
18	GO:0022891: substrate-specific transmembrane transporter activity	1.34E-03
19	GO:0048038: quinone binding	1.89E-03
20	GO:0008483: transaminase activity	2.24E-03
21	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.80E-03
22	GO:0045735: nutrient reservoir activity	5.55E-03
23	GO:0005509: calcium ion binding	6.14E-03
24	GO:0042802: identical protein binding	1.09E-02
25	GO:0008168: methyltransferase activity	1.22E-02
26	GO:0016788: hydrolase activity, acting on ester bonds	1.27E-02
27	GO:0003735: structural constituent of ribosome	1.33E-02
28	GO:0009055: electron carrier activity	2.02E-02
29	GO:0008289: lipid binding	2.44E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	3.19E-23
2	GO:0009507: chloroplast	6.18E-22
3	GO:0009534: chloroplast thylakoid	3.71E-19
4	GO:0009941: chloroplast envelope	6.86E-19
5	GO:0009579: thylakoid	3.14E-15
6	GO:0009543: chloroplast thylakoid lumen	4.70E-09
7	GO:0009570: chloroplast stroma	1.20E-08
8	GO:0030095: chloroplast photosystem II	6.67E-08
9	GO:0010287: plastoglobule	3.46E-07
10	GO:0009523: photosystem II	5.84E-07
11	GO:0009538: photosystem I reaction center	2.71E-06
12	GO:0031977: thylakoid lumen	4.28E-06
13	GO:0009515: granal stacked thylakoid	1.48E-05
14	GO:0009654: photosystem II oxygen evolving complex	2.38E-05
15	GO:0009522: photosystem I	5.28E-05
16	GO:0019898: extrinsic component of membrane	5.72E-05
17	GO:0009528: plastid inner membrane	6.95E-05
18	GO:0009527: plastid outer membrane	1.45E-04
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.93E-04
20	GO:0012511: monolayer-surrounded lipid storage body	6.67E-04
21	GO:0030076: light-harvesting complex	9.19E-04
22	GO:0005840: ribosome	9.30E-04
23	GO:0016020: membrane	1.10E-03
24	GO:0042651: thylakoid membrane	1.12E-03
25	GO:0009532: plastid stroma	1.19E-03
26	GO:0010319: stromule	2.24E-03
27	GO:0009707: chloroplast outer membrane	2.90E-03
28	GO:0022626: cytosolic ribosome	3.17E-03
29	GO:0015934: large ribosomal subunit	3.20E-03
30	GO:0048046: apoplast	4.42E-03
31	GO:0009706: chloroplast inner membrane	6.31E-03
32	GO:0031969: chloroplast membrane	1.46E-02
33	GO:0016021: integral component of membrane	2.26E-02
34	GO:0005777: peroxisome	3.20E-02