co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G05620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
2	GO:0042821: pyridoxal biosynthetic process	0.00E+00
3	GO:0046677: response to antibiotic	0.00E+00
4	GO:0042820: vitamin B6 catabolic process	0.00E+00
5	GO:0015882: L-ascorbic acid transport	0.00E+00
6	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
7	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
8	GO:0009661: chromoplast organization	0.00E+00
9	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
10	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
11	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
12	GO:0098586: cellular response to virus	0.00E+00
13	GO:0009658: chloroplast organization	5.62E-10
14	GO:0010136: ureide catabolic process	1.36E-08
15	GO:0006145: purine nucleobase catabolic process	6.63E-08
16	GO:0018298: protein-chromophore linkage	1.90E-06
17	GO:0080005: photosystem stoichiometry adjustment	2.32E-06
18	GO:0000256: allantoin catabolic process	2.32E-06
19	GO:0015979: photosynthesis	9.65E-06
20	GO:2001141: regulation of RNA biosynthetic process	1.93E-05
21	GO:0010207: photosystem II assembly	3.39E-05
22	GO:0015995: chlorophyll biosynthetic process	3.46E-05
23	GO:0010190: cytochrome b6f complex assembly	8.30E-05
24	GO:0009643: photosynthetic acclimation	8.30E-05
25	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.30E-05
26	GO:0009443: pyridoxal 5'-phosphate salvage	2.22E-04
27	GO:0031426: polycistronic mRNA processing	2.22E-04
28	GO:1904966: positive regulation of vitamin E biosynthetic process	2.22E-04
29	GO:0071277: cellular response to calcium ion	2.22E-04
30	GO:1990052: ER to chloroplast lipid transport	2.22E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	2.22E-04
32	GO:0071461: cellular response to redox state	2.22E-04
33	GO:0006436: tryptophanyl-tRNA aminoacylation	2.22E-04
34	GO:0010028: xanthophyll cycle	2.22E-04
35	GO:0010362: negative regulation of anion channel activity by blue light	2.22E-04
36	GO:0055114: oxidation-reduction process	4.20E-04
37	GO:0006352: DNA-templated transcription, initiation	4.69E-04
38	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.95E-04
39	GO:0048314: embryo sac morphogenesis	4.95E-04
40	GO:0042548: regulation of photosynthesis, light reaction	4.95E-04
41	GO:0034755: iron ion transmembrane transport	4.95E-04
42	GO:0030187: melatonin biosynthetic process	4.95E-04
43	GO:0050992: dimethylallyl diphosphate biosynthetic process	4.95E-04
44	GO:1904143: positive regulation of carotenoid biosynthetic process	4.95E-04
45	GO:0016122: xanthophyll metabolic process	4.95E-04
46	GO:0080185: effector dependent induction by symbiont of host immune response	4.95E-04
47	GO:0046741: transport of virus in host, tissue to tissue	4.95E-04
48	GO:0042853: L-alanine catabolic process	4.95E-04
49	GO:0009915: phloem sucrose loading	4.95E-04
50	GO:0009767: photosynthetic electron transport chain	6.09E-04
51	GO:0009637: response to blue light	6.86E-04
52	GO:0009853: photorespiration	6.86E-04
53	GO:0007623: circadian rhythm	7.59E-04
54	GO:0009405: pathogenesis	8.05E-04
55	GO:0090391: granum assembly	8.05E-04
56	GO:0006013: mannose metabolic process	8.05E-04
57	GO:0006696: ergosterol biosynthetic process	8.05E-04
58	GO:0010114: response to red light	9.41E-04
59	GO:0009768: photosynthesis, light harvesting in photosystem I	1.03E-03
60	GO:0009644: response to high light intensity	1.04E-03
61	GO:0046739: transport of virus in multicellular host	1.15E-03
62	GO:0006168: adenine salvage	1.15E-03
63	GO:0050482: arachidonic acid secretion	1.15E-03
64	GO:0043572: plastid fission	1.15E-03
65	GO:0006166: purine ribonucleoside salvage	1.15E-03
66	GO:0010239: chloroplast mRNA processing	1.15E-03
67	GO:0006021: inositol biosynthetic process	1.53E-03
68	GO:0071483: cellular response to blue light	1.53E-03
69	GO:0009902: chloroplast relocation	1.53E-03
70	GO:0010021: amylopectin biosynthetic process	1.53E-03
71	GO:0015994: chlorophyll metabolic process	1.53E-03
72	GO:0016120: carotene biosynthetic process	1.95E-03
73	GO:0035434: copper ion transmembrane transport	1.95E-03
74	GO:0044209: AMP salvage	1.95E-03
75	GO:0009791: post-embryonic development	2.12E-03
76	GO:0009416: response to light stimulus	2.21E-03
77	GO:0046855: inositol phosphate dephosphorylation	2.40E-03
78	GO:0045893: positive regulation of transcription, DNA-templated	2.82E-03
79	GO:0010189: vitamin E biosynthetic process	2.89E-03
80	GO:0009648: photoperiodism	2.89E-03
81	GO:0071470: cellular response to osmotic stress	2.89E-03
82	GO:0010196: nonphotochemical quenching	3.40E-03
83	GO:0009645: response to low light intensity stimulus	3.40E-03
84	GO:0010038: response to metal ion	3.40E-03
85	GO:0048528: post-embryonic root development	3.40E-03
86	GO:1900056: negative regulation of leaf senescence	3.40E-03
87	GO:0009642: response to light intensity	3.94E-03
88	GO:0009704: de-etiolation	3.94E-03
89	GO:0050821: protein stabilization	3.94E-03
90	GO:0006644: phospholipid metabolic process	3.94E-03
91	GO:0048564: photosystem I assembly	3.94E-03
92	GO:0009657: plastid organization	4.51E-03
93	GO:0032544: plastid translation	4.51E-03
94	GO:0071482: cellular response to light stimulus	4.51E-03
95	GO:0006811: ion transport	4.68E-03
96	GO:0010218: response to far red light	4.68E-03
97	GO:0009821: alkaloid biosynthetic process	5.11E-03
98	GO:0048507: meristem development	5.11E-03
99	GO:0090333: regulation of stomatal closure	5.11E-03
100	GO:0006783: heme biosynthetic process	5.11E-03
101	GO:0006754: ATP biosynthetic process	5.11E-03
102	GO:0000373: Group II intron splicing	5.11E-03
103	GO:0098656: anion transmembrane transport	5.11E-03
104	GO:0046686: response to cadmium ion	5.24E-03
105	GO:0034599: cellular response to oxidative stress	5.62E-03
106	GO:0010380: regulation of chlorophyll biosynthetic process	5.74E-03
107	GO:1900426: positive regulation of defense response to bacterium	5.74E-03
108	GO:0009638: phototropism	5.74E-03
109	GO:0006779: porphyrin-containing compound biosynthetic process	5.74E-03
110	GO:0009098: leucine biosynthetic process	5.74E-03
111	GO:0006782: protoporphyrinogen IX biosynthetic process	6.38E-03
112	GO:0006995: cellular response to nitrogen starvation	6.38E-03
113	GO:0045036: protein targeting to chloroplast	6.38E-03
114	GO:0009641: shade avoidance	6.38E-03
115	GO:0006259: DNA metabolic process	6.38E-03
116	GO:0009970: cellular response to sulfate starvation	6.38E-03
117	GO:0006265: DNA topological change	7.06E-03
118	GO:0006879: cellular iron ion homeostasis	7.06E-03
119	GO:0016485: protein processing	7.06E-03
120	GO:0006790: sulfur compound metabolic process	7.76E-03
121	GO:0031347: regulation of defense response	8.40E-03
122	GO:0005986: sucrose biosynthetic process	8.48E-03
123	GO:0010020: chloroplast fission	9.23E-03
124	GO:0010223: secondary shoot formation	9.23E-03
125	GO:0009266: response to temperature stimulus	9.23E-03
126	GO:0006364: rRNA processing	9.36E-03
127	GO:0080167: response to karrikin	9.77E-03
128	GO:0019853: L-ascorbic acid biosynthetic process	1.00E-02
129	GO:0046854: phosphatidylinositol phosphorylation	1.00E-02
130	GO:0006071: glycerol metabolic process	1.08E-02
131	GO:0006833: water transport	1.08E-02
132	GO:0045454: cell redox homeostasis	1.23E-02
133	GO:0006825: copper ion transport	1.24E-02
134	GO:0051302: regulation of cell division	1.24E-02
135	GO:0008299: isoprenoid biosynthetic process	1.24E-02
136	GO:0006418: tRNA aminoacylation for protein translation	1.24E-02
137	GO:0009409: response to cold	1.29E-02
138	GO:0006457: protein folding	1.29E-02
139	GO:0051321: meiotic cell cycle	1.33E-02
140	GO:0016226: iron-sulfur cluster assembly	1.42E-02
141	GO:0009306: protein secretion	1.60E-02
142	GO:0016117: carotenoid biosynthetic process	1.70E-02
143	GO:0009058: biosynthetic process	1.77E-02
144	GO:0034220: ion transmembrane transport	1.79E-02
145	GO:0010118: stomatal movement	1.79E-02
146	GO:0006606: protein import into nucleus	1.79E-02
147	GO:0006662: glycerol ether metabolic process	1.89E-02
148	GO:0007059: chromosome segregation	1.99E-02
149	GO:0019252: starch biosynthetic process	2.09E-02
150	GO:0006413: translational initiation	2.16E-02
151	GO:0000302: response to reactive oxygen species	2.19E-02
152	GO:0016032: viral process	2.30E-02
153	GO:0019761: glucosinolate biosynthetic process	2.30E-02
154	GO:0010468: regulation of gene expression	2.76E-02
155	GO:0010027: thylakoid membrane organization	2.85E-02
156	GO:0009735: response to cytokinin	2.94E-02
157	GO:0009816: defense response to bacterium, incompatible interaction	2.97E-02
158	GO:0048481: plant ovule development	3.45E-02
159	GO:0008219: cell death	3.45E-02
160	GO:0000160: phosphorelay signal transduction system	3.57E-02
161	GO:0007568: aging	3.82E-02
162	GO:0009910: negative regulation of flower development	3.82E-02
163	GO:0000724: double-strand break repair via homologous recombination	3.95E-02
164	GO:0055085: transmembrane transport	4.41E-02
165	GO:0006631: fatty acid metabolic process	4.61E-02
166	GO:0046777: protein autophosphorylation	4.73E-02
167	GO:0042542: response to hydrogen peroxide	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
2	GO:0009976: tocopherol cyclase activity	0.00E+00
3	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
4	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
7	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
8	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
9	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
10	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
11	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
12	GO:0047652: allantoate deiminase activity	0.00E+00
13	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
14	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
15	GO:0008080: N-acetyltransferase activity	7.33E-06
16	GO:0070402: NADPH binding	8.46E-06
17	GO:0016168: chlorophyll binding	2.78E-05
18	GO:0001053: plastid sigma factor activity	3.53E-05
19	GO:0008453: alanine-glyoxylate transaminase activity	3.53E-05
20	GO:0016987: sigma factor activity	3.53E-05
21	GO:0000293: ferric-chelate reductase activity	8.30E-05
22	GO:0016853: isomerase activity	1.80E-04
23	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	2.22E-04
24	GO:0051996: squalene synthase activity	2.22E-04
25	GO:0004830: tryptophan-tRNA ligase activity	2.22E-04
26	GO:0030941: chloroplast targeting sequence binding	2.22E-04
27	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.22E-04
28	GO:0035671: enone reductase activity	2.22E-04
29	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	2.22E-04
30	GO:0008237: metallopeptidase activity	3.09E-04
31	GO:0008934: inositol monophosphate 1-phosphatase activity	4.95E-04
32	GO:0052833: inositol monophosphate 4-phosphatase activity	4.95E-04
33	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.95E-04
34	GO:0003862: 3-isopropylmalate dehydrogenase activity	4.95E-04
35	GO:0008883: glutamyl-tRNA reductase activity	4.95E-04
36	GO:0052832: inositol monophosphate 3-phosphatase activity	4.95E-04
37	GO:0033201: alpha-1,4-glucan synthase activity	4.95E-04
38	GO:0003913: DNA photolyase activity	8.05E-04
39	GO:0032947: protein complex scaffold	8.05E-04
40	GO:0004848: ureidoglycolate hydrolase activity	8.05E-04
41	GO:0008253: 5'-nucleotidase activity	8.05E-04
42	GO:0004148: dihydrolipoyl dehydrogenase activity	8.05E-04
43	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.05E-04
44	GO:0050307: sucrose-phosphate phosphatase activity	8.05E-04
45	GO:0004096: catalase activity	8.05E-04
46	GO:0004180: carboxypeptidase activity	8.05E-04
47	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.05E-04
48	GO:0004373: glycogen (starch) synthase activity	8.05E-04
49	GO:0031409: pigment binding	8.53E-04
50	GO:0016491: oxidoreductase activity	1.12E-03
51	GO:0004176: ATP-dependent peptidase activity	1.13E-03
52	GO:0003999: adenine phosphoribosyltransferase activity	1.15E-03
53	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.15E-03
54	GO:0016851: magnesium chelatase activity	1.15E-03
55	GO:0009882: blue light photoreceptor activity	1.15E-03
56	GO:0048027: mRNA 5'-UTR binding	1.15E-03
57	GO:0022891: substrate-specific transmembrane transporter activity	1.35E-03
58	GO:0009011: starch synthase activity	1.53E-03
59	GO:0043495: protein anchor	1.53E-03
60	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.53E-03
61	GO:0005319: lipid transporter activity	1.53E-03
62	GO:0051861: glycolipid binding	1.53E-03
63	GO:0016887: ATPase activity	1.74E-03
64	GO:0004623: phospholipase A2 activity	1.95E-03
65	GO:0051538: 3 iron, 4 sulfur cluster binding	1.95E-03
66	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.89E-03
67	GO:0004559: alpha-mannosidase activity	2.89E-03
68	GO:0019899: enzyme binding	3.40E-03
69	GO:0004033: aldo-keto reductase (NADP) activity	3.94E-03
70	GO:0005375: copper ion transmembrane transporter activity	4.51E-03
71	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.51E-03
72	GO:0050897: cobalt ion binding	4.91E-03
73	GO:0030145: manganese ion binding	4.91E-03
74	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.11E-03
75	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	5.11E-03
76	GO:0045309: protein phosphorylated amino acid binding	5.74E-03
77	GO:0016844: strictosidine synthase activity	5.74E-03
78	GO:0005381: iron ion transmembrane transporter activity	5.74E-03
79	GO:0019904: protein domain specific binding	7.06E-03
80	GO:0051537: 2 iron, 2 sulfur cluster binding	7.50E-03
81	GO:0046872: metal ion binding	7.75E-03
82	GO:0005315: inorganic phosphate transmembrane transporter activity	8.48E-03
83	GO:0031072: heat shock protein binding	8.48E-03
84	GO:0000155: phosphorelay sensor kinase activity	8.48E-03
85	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.36E-03
86	GO:0051536: iron-sulfur cluster binding	1.16E-02
87	GO:0003727: single-stranded RNA binding	1.60E-02
88	GO:0008514: organic anion transmembrane transporter activity	1.60E-02
89	GO:0047134: protein-disulfide reductase activity	1.70E-02
90	GO:0004812: aminoacyl-tRNA ligase activity	1.70E-02
91	GO:0010181: FMN binding	1.99E-02
92	GO:0004791: thioredoxin-disulfide reductase activity	1.99E-02
93	GO:0008565: protein transporter activity	2.01E-02
94	GO:0048038: quinone binding	2.19E-02
95	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.41E-02
96	GO:0005506: iron ion binding	2.47E-02
97	GO:0016791: phosphatase activity	2.52E-02
98	GO:0015250: water channel activity	2.85E-02
99	GO:0042802: identical protein binding	2.94E-02
100	GO:0004721: phosphoprotein phosphatase activity	3.20E-02
101	GO:0008236: serine-type peptidase activity	3.32E-02
102	GO:0000287: magnesium ion binding	3.51E-02
103	GO:0004222: metalloendopeptidase activity	3.70E-02
104	GO:0050661: NADP binding	4.47E-02
105	GO:0061630: ubiquitin protein ligase activity	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.23E-37
2	GO:0009535: chloroplast thylakoid membrane	1.65E-18
3	GO:0009570: chloroplast stroma	9.29E-11
4	GO:0009941: chloroplast envelope	3.38E-10
5	GO:0009534: chloroplast thylakoid	3.55E-08
6	GO:0031969: chloroplast membrane	6.30E-06
7	GO:0010287: plastoglobule	4.97E-05
8	GO:0042651: thylakoid membrane	6.72E-05
9	GO:0009579: thylakoid	1.76E-04
10	GO:0009523: photosystem II	1.99E-04
11	GO:0009515: granal stacked thylakoid	2.22E-04
12	GO:0031972: chloroplast intermembrane space	2.22E-04
13	GO:0009782: photosystem I antenna complex	2.22E-04
14	GO:0009706: chloroplast inner membrane	3.25E-04
15	GO:0010007: magnesium chelatase complex	8.05E-04
16	GO:0033281: TAT protein transport complex	8.05E-04
17	GO:0009654: photosystem II oxygen evolving complex	1.03E-03
18	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.53E-03
19	GO:0005777: peroxisome	2.82E-03
20	GO:0010319: stromule	2.91E-03
21	GO:0009536: plastid	3.27E-03
22	GO:0031359: integral component of chloroplast outer membrane	3.40E-03
23	GO:0009501: amyloplast	3.94E-03
24	GO:0009707: chloroplast outer membrane	4.25E-03
25	GO:0009539: photosystem II reaction center	4.51E-03
26	GO:0009514: glyoxysome	4.51E-03
27	GO:0042644: chloroplast nucleoid	5.11E-03
28	GO:0031977: thylakoid lumen	6.39E-03
29	GO:0030076: light-harvesting complex	1.00E-02
30	GO:0043234: protein complex	1.08E-02
31	GO:0005747: mitochondrial respiratory chain complex I	1.14E-02
32	GO:0045271: respiratory chain complex I	1.24E-02
33	GO:0009532: plastid stroma	1.33E-02
34	GO:0009522: photosystem I	1.99E-02
35	GO:0019898: extrinsic component of membrane	2.09E-02
36	GO:0009295: nucleoid	2.63E-02
37	GO:0005778: peroxisomal membrane	2.63E-02