GO Enrichment Analysis of Co-expressed Genes with
AT2G04880
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 3 | GO:0098586: cellular response to virus | 0.00E+00 |
| 4 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 7 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 8 | GO:0055114: oxidation-reduction process | 3.08E-05 |
| 9 | GO:0010028: xanthophyll cycle | 7.90E-05 |
| 10 | GO:0033388: putrescine biosynthetic process from arginine | 7.90E-05 |
| 11 | GO:0071277: cellular response to calcium ion | 7.90E-05 |
| 12 | GO:0009443: pyridoxal 5'-phosphate salvage | 7.90E-05 |
| 13 | GO:0048314: embryo sac morphogenesis | 1.89E-04 |
| 14 | GO:0030187: melatonin biosynthetic process | 1.89E-04 |
| 15 | GO:0000256: allantoin catabolic process | 1.89E-04 |
| 16 | GO:0009446: putrescine biosynthetic process | 1.89E-04 |
| 17 | GO:0046741: transport of virus in host, tissue to tissue | 1.89E-04 |
| 18 | GO:0006435: threonyl-tRNA aminoacylation | 1.89E-04 |
| 19 | GO:0010136: ureide catabolic process | 3.17E-04 |
| 20 | GO:0009405: pathogenesis | 3.17E-04 |
| 21 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 4.58E-04 |
| 22 | GO:0046739: transport of virus in multicellular host | 4.58E-04 |
| 23 | GO:0043572: plastid fission | 4.58E-04 |
| 24 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 4.58E-04 |
| 25 | GO:0006145: purine nucleobase catabolic process | 4.58E-04 |
| 26 | GO:0051016: barbed-end actin filament capping | 4.58E-04 |
| 27 | GO:0042989: sequestering of actin monomers | 4.58E-04 |
| 28 | GO:0006021: inositol biosynthetic process | 6.09E-04 |
| 29 | GO:0009765: photosynthesis, light harvesting | 6.09E-04 |
| 30 | GO:0016558: protein import into peroxisome matrix | 7.72E-04 |
| 31 | GO:0030041: actin filament polymerization | 7.72E-04 |
| 32 | GO:0016123: xanthophyll biosynthetic process | 7.72E-04 |
| 33 | GO:0016120: carotene biosynthetic process | 7.72E-04 |
| 34 | GO:0042549: photosystem II stabilization | 9.42E-04 |
| 35 | GO:0046855: inositol phosphate dephosphorylation | 9.42E-04 |
| 36 | GO:0015995: chlorophyll biosynthetic process | 9.59E-04 |
| 37 | GO:0018298: protein-chromophore linkage | 1.06E-03 |
| 38 | GO:0010189: vitamin E biosynthetic process | 1.12E-03 |
| 39 | GO:0071470: cellular response to osmotic stress | 1.12E-03 |
| 40 | GO:0051510: regulation of unidimensional cell growth | 1.31E-03 |
| 41 | GO:0048528: post-embryonic root development | 1.31E-03 |
| 42 | GO:0009853: photorespiration | 1.32E-03 |
| 43 | GO:0009704: de-etiolation | 1.51E-03 |
| 44 | GO:0048564: photosystem I assembly | 1.51E-03 |
| 45 | GO:0009642: response to light intensity | 1.51E-03 |
| 46 | GO:0010114: response to red light | 1.70E-03 |
| 47 | GO:0009657: plastid organization | 1.72E-03 |
| 48 | GO:0015979: photosynthesis | 1.89E-03 |
| 49 | GO:0090333: regulation of stomatal closure | 1.95E-03 |
| 50 | GO:0000373: Group II intron splicing | 1.95E-03 |
| 51 | GO:0098656: anion transmembrane transport | 1.95E-03 |
| 52 | GO:0009821: alkaloid biosynthetic process | 1.95E-03 |
| 53 | GO:0006949: syncytium formation | 2.41E-03 |
| 54 | GO:0006259: DNA metabolic process | 2.41E-03 |
| 55 | GO:0009793: embryo development ending in seed dormancy | 2.65E-03 |
| 56 | GO:0006265: DNA topological change | 2.66E-03 |
| 57 | GO:0006790: sulfur compound metabolic process | 2.92E-03 |
| 58 | GO:0009553: embryo sac development | 3.12E-03 |
| 59 | GO:0006807: nitrogen compound metabolic process | 3.18E-03 |
| 60 | GO:0010207: photosystem II assembly | 3.45E-03 |
| 61 | GO:0010020: chloroplast fission | 3.45E-03 |
| 62 | GO:0019853: L-ascorbic acid biosynthetic process | 3.73E-03 |
| 63 | GO:0090351: seedling development | 3.73E-03 |
| 64 | GO:0046854: phosphatidylinositol phosphorylation | 3.73E-03 |
| 65 | GO:0006863: purine nucleobase transport | 4.02E-03 |
| 66 | GO:0080147: root hair cell development | 4.31E-03 |
| 67 | GO:0007010: cytoskeleton organization | 4.31E-03 |
| 68 | GO:0009768: photosynthesis, light harvesting in photosystem I | 4.61E-03 |
| 69 | GO:0051302: regulation of cell division | 4.61E-03 |
| 70 | GO:0007017: microtubule-based process | 4.61E-03 |
| 71 | GO:0051321: meiotic cell cycle | 4.92E-03 |
| 72 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 5.56E-03 |
| 73 | GO:0009306: protein secretion | 5.89E-03 |
| 74 | GO:0016117: carotenoid biosynthetic process | 6.22E-03 |
| 75 | GO:0006606: protein import into nucleus | 6.57E-03 |
| 76 | GO:0048868: pollen tube development | 6.92E-03 |
| 77 | GO:0007059: chromosome segregation | 7.28E-03 |
| 78 | GO:0008654: phospholipid biosynthetic process | 7.64E-03 |
| 79 | GO:0000302: response to reactive oxygen species | 8.01E-03 |
| 80 | GO:0006635: fatty acid beta-oxidation | 8.01E-03 |
| 81 | GO:0010193: response to ozone | 8.01E-03 |
| 82 | GO:0016032: viral process | 8.39E-03 |
| 83 | GO:0009828: plant-type cell wall loosening | 9.16E-03 |
| 84 | GO:0042128: nitrate assimilation | 1.12E-02 |
| 85 | GO:0009817: defense response to fungus, incompatible interaction | 1.25E-02 |
| 86 | GO:0010218: response to far red light | 1.34E-02 |
| 87 | GO:0006811: ion transport | 1.34E-02 |
| 88 | GO:0007568: aging | 1.38E-02 |
| 89 | GO:0048527: lateral root development | 1.38E-02 |
| 90 | GO:0000724: double-strand break repair via homologous recombination | 1.43E-02 |
| 91 | GO:0009637: response to blue light | 1.48E-02 |
| 92 | GO:0034599: cellular response to oxidative stress | 1.52E-02 |
| 93 | GO:0009644: response to high light intensity | 1.87E-02 |
| 94 | GO:0031347: regulation of defense response | 2.02E-02 |
| 95 | GO:0009664: plant-type cell wall organization | 2.08E-02 |
| 96 | GO:0006810: transport | 2.15E-02 |
| 97 | GO:0006364: rRNA processing | 2.19E-02 |
| 98 | GO:0010224: response to UV-B | 2.24E-02 |
| 99 | GO:0006417: regulation of translation | 2.35E-02 |
| 100 | GO:0009735: response to cytokinin | 2.55E-02 |
| 101 | GO:0009416: response to light stimulus | 2.79E-02 |
| 102 | GO:0006396: RNA processing | 2.87E-02 |
| 103 | GO:0009058: biosynthetic process | 3.42E-02 |
| 104 | GO:0009845: seed germination | 3.49E-02 |
| 105 | GO:0009790: embryo development | 3.68E-02 |
| 106 | GO:0006413: translational initiation | 3.94E-02 |
| 107 | GO:0007623: circadian rhythm | 4.14E-02 |
| 108 | GO:0009451: RNA modification | 4.21E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 2 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 3 | GO:0050126: N-carbamoylputrescine amidase activity | 0.00E+00 |
| 4 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 5 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 6 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 7 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 8 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 9 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 10 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 11 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 12 | GO:0042623: ATPase activity, coupled | 0.00E+00 |
| 13 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 7.90E-05 |
| 14 | GO:0035671: enone reductase activity | 7.90E-05 |
| 15 | GO:0004829: threonine-tRNA ligase activity | 1.89E-04 |
| 16 | GO:0019172: glyoxalase III activity | 1.89E-04 |
| 17 | GO:0052832: inositol monophosphate 3-phosphatase activity | 1.89E-04 |
| 18 | GO:0008934: inositol monophosphate 1-phosphatase activity | 1.89E-04 |
| 19 | GO:0052833: inositol monophosphate 4-phosphatase activity | 1.89E-04 |
| 20 | GO:0004751: ribose-5-phosphate isomerase activity | 3.17E-04 |
| 21 | GO:0070402: NADPH binding | 3.17E-04 |
| 22 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 3.17E-04 |
| 23 | GO:0004148: dihydrolipoyl dehydrogenase activity | 3.17E-04 |
| 24 | GO:0016851: magnesium chelatase activity | 4.58E-04 |
| 25 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 6.09E-04 |
| 26 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 6.09E-04 |
| 27 | GO:0008453: alanine-glyoxylate transaminase activity | 6.09E-04 |
| 28 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 7.72E-04 |
| 29 | GO:0003785: actin monomer binding | 7.72E-04 |
| 30 | GO:0016168: chlorophyll binding | 8.67E-04 |
| 31 | GO:0004462: lactoylglutathione lyase activity | 9.42E-04 |
| 32 | GO:0004605: phosphatidate cytidylyltransferase activity | 9.42E-04 |
| 33 | GO:0000293: ferric-chelate reductase activity | 9.42E-04 |
| 34 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 1.12E-03 |
| 35 | GO:0004033: aldo-keto reductase (NADP) activity | 1.51E-03 |
| 36 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 1.72E-03 |
| 37 | GO:0051537: 2 iron, 2 sulfur cluster binding | 1.83E-03 |
| 38 | GO:0045309: protein phosphorylated amino acid binding | 2.18E-03 |
| 39 | GO:0016844: strictosidine synthase activity | 2.18E-03 |
| 40 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 2.66E-03 |
| 41 | GO:0019904: protein domain specific binding | 2.66E-03 |
| 42 | GO:0003779: actin binding | 3.12E-03 |
| 43 | GO:0005315: inorganic phosphate transmembrane transporter activity | 3.18E-03 |
| 44 | GO:0031409: pigment binding | 4.02E-03 |
| 45 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 4.12E-03 |
| 46 | GO:0016491: oxidoreductase activity | 4.39E-03 |
| 47 | GO:0005345: purine nucleobase transmembrane transporter activity | 4.61E-03 |
| 48 | GO:0008565: protein transporter activity | 4.80E-03 |
| 49 | GO:0022891: substrate-specific transmembrane transporter activity | 5.56E-03 |
| 50 | GO:0003727: single-stranded RNA binding | 5.89E-03 |
| 51 | GO:0008514: organic anion transmembrane transporter activity | 5.89E-03 |
| 52 | GO:0008080: N-acetyltransferase activity | 6.92E-03 |
| 53 | GO:0048038: quinone binding | 8.01E-03 |
| 54 | GO:0050897: cobalt ion binding | 1.38E-02 |
| 55 | GO:0043621: protein self-association | 1.87E-02 |
| 56 | GO:0031625: ubiquitin protein ligase binding | 2.35E-02 |
| 57 | GO:0016887: ATPase activity | 2.44E-02 |
| 58 | GO:0019843: rRNA binding | 3.30E-02 |
| 59 | GO:0016829: lyase activity | 3.49E-02 |
| 60 | GO:0005507: copper ion binding | 3.96E-02 |
| 61 | GO:0003743: translation initiation factor activity | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.50E-21 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.23E-14 |
| 3 | GO:0009941: chloroplast envelope | 6.70E-07 |
| 4 | GO:0009534: chloroplast thylakoid | 2.42E-06 |
| 5 | GO:0009523: photosystem II | 2.35E-05 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 3.87E-05 |
| 7 | GO:0031977: thylakoid lumen | 1.31E-04 |
| 8 | GO:0008290: F-actin capping protein complex | 1.89E-04 |
| 9 | GO:0009579: thylakoid | 2.33E-04 |
| 10 | GO:0033281: TAT protein transport complex | 3.17E-04 |
| 11 | GO:0010007: magnesium chelatase complex | 3.17E-04 |
| 12 | GO:0009570: chloroplast stroma | 4.55E-04 |
| 13 | GO:0030286: dynein complex | 6.09E-04 |
| 14 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 6.09E-04 |
| 15 | GO:0009295: nucleoid | 7.35E-04 |
| 16 | GO:0031969: chloroplast membrane | 1.60E-03 |
| 17 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.95E-03 |
| 18 | GO:0005747: mitochondrial respiratory chain complex I | 2.76E-03 |
| 19 | GO:0009508: plastid chromosome | 3.18E-03 |
| 20 | GO:0005938: cell cortex | 3.18E-03 |
| 21 | GO:0009706: chloroplast inner membrane | 3.21E-03 |
| 22 | GO:0030095: chloroplast photosystem II | 3.45E-03 |
| 23 | GO:0010287: plastoglobule | 3.81E-03 |
| 24 | GO:0042651: thylakoid membrane | 4.61E-03 |
| 25 | GO:0045271: respiratory chain complex I | 4.61E-03 |
| 26 | GO:0009654: photosystem II oxygen evolving complex | 4.61E-03 |
| 27 | GO:0015629: actin cytoskeleton | 5.56E-03 |
| 28 | GO:0009522: photosystem I | 7.28E-03 |
| 29 | GO:0019898: extrinsic component of membrane | 7.64E-03 |
| 30 | GO:0005778: peroxisomal membrane | 9.56E-03 |
| 31 | GO:0010319: stromule | 9.56E-03 |
| 32 | GO:0009707: chloroplast outer membrane | 1.25E-02 |
| 33 | GO:0009505: plant-type cell wall | 1.76E-02 |
| 34 | GO:0031966: mitochondrial membrane | 2.08E-02 |
| 35 | GO:0005759: mitochondrial matrix | 3.88E-02 |