co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G04690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006907: pinocytosis	0.00E+00
2	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
3	GO:0071454: cellular response to anoxia	3.25E-05
4	GO:0048438: floral whorl development	3.25E-05
5	GO:0080153: negative regulation of reductive pentose-phosphate cycle	8.18E-05
6	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.18E-05
7	GO:0000002: mitochondrial genome maintenance	8.18E-05
8	GO:0009432: SOS response	1.42E-04
9	GO:0009958: positive gravitropism	1.45E-04
10	GO:0000730: DNA recombinase assembly	2.11E-04
11	GO:1902476: chloride transmembrane transport	2.11E-04
12	GO:0031935: regulation of chromatin silencing	2.85E-04
13	GO:0016123: xanthophyll biosynthetic process	3.65E-04
14	GO:0009959: negative gravitropism	4.48E-04
15	GO:0000741: karyogamy	4.48E-04
16	GO:0010076: maintenance of floral meristem identity	5.36E-04
17	GO:0042148: strand invasion	6.27E-04
18	GO:0080111: DNA demethylation	6.27E-04
19	GO:0006821: chloride transport	6.27E-04
20	GO:0010928: regulation of auxin mediated signaling pathway	7.22E-04
21	GO:0022900: electron transport chain	8.20E-04
22	GO:0010212: response to ionizing radiation	8.20E-04
23	GO:0006312: mitotic recombination	1.36E-03
24	GO:0010582: floral meristem determinacy	1.36E-03
25	GO:0009767: photosynthetic electron transport chain	1.47E-03
26	GO:0009266: response to temperature stimulus	1.60E-03
27	GO:0034605: cellular response to heat	1.60E-03
28	GO:0019253: reductive pentose-phosphate cycle	1.60E-03
29	GO:0007017: microtubule-based process	2.12E-03
30	GO:0080092: regulation of pollen tube growth	2.40E-03
31	GO:0070417: cellular response to cold	2.84E-03
32	GO:0010197: polar nucleus fusion	3.15E-03
33	GO:0007264: small GTPase mediated signal transduction	3.80E-03
34	GO:0016032: viral process	3.80E-03
35	GO:0006310: DNA recombination	4.14E-03
36	GO:0009639: response to red or far red light	4.14E-03
37	GO:0000910: cytokinesis	4.49E-03
38	GO:0016126: sterol biosynthetic process	4.67E-03
39	GO:0009910: negative regulation of flower development	6.19E-03
40	GO:0009744: response to sucrose	7.87E-03
41	GO:0000165: MAPK cascade	8.99E-03
42	GO:0009451: RNA modification	1.86E-02
43	GO:0007166: cell surface receptor signaling pathway	2.01E-02
44	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.36E-02
45	GO:0042254: ribosome biogenesis	2.53E-02
46	GO:0009860: pollen tube growth	2.63E-02
47	GO:0046777: protein autophosphorylation	3.05E-02
48	GO:0045892: negative regulation of transcription, DNA-templated	3.34E-02
49	GO:0032259: methylation	3.72E-02
50	GO:0006281: DNA repair	3.84E-02
51	GO:0009408: response to heat	3.84E-02
52	GO:0009734: auxin-activated signaling pathway	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
2	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
3	GO:0004848: ureidoglycolate hydrolase activity	1.42E-04
4	GO:0019003: GDP binding	1.42E-04
5	GO:0000900: translation repressor activity, nucleic acid binding	1.42E-04
6	GO:0005253: anion channel activity	2.85E-04
7	GO:0005247: voltage-gated chloride channel activity	4.48E-04
8	GO:0000150: recombinase activity	6.27E-04
9	GO:0004520: endodeoxyribonuclease activity	7.22E-04
10	GO:0000400: four-way junction DNA binding	7.22E-04
11	GO:0003690: double-stranded DNA binding	7.76E-04
12	GO:0003777: microtubule motor activity	8.28E-04
13	GO:0001055: RNA polymerase II activity	1.02E-03
14	GO:0001054: RNA polymerase I activity	1.24E-03
15	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.24E-03
16	GO:0001056: RNA polymerase III activity	1.36E-03
17	GO:0008094: DNA-dependent ATPase activity	2.26E-03
18	GO:0048038: quinone binding	3.63E-03
19	GO:0004518: nuclease activity	3.80E-03
20	GO:0003697: single-stranded DNA binding	6.60E-03
21	GO:0004712: protein serine/threonine/tyrosine kinase activity	7.01E-03
22	GO:0051537: 2 iron, 2 sulfur cluster binding	8.31E-03
23	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.69E-03
24	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.60E-02
25	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.74E-02
26	GO:0008017: microtubule binding	1.89E-02
27	GO:0008194: UDP-glycosyltransferase activity	1.98E-02
28	GO:0005515: protein binding	2.09E-02
29	GO:0016491: oxidoreductase activity	2.34E-02
30	GO:0008168: methyltransferase activity	2.43E-02
31	GO:0003924: GTPase activity	3.84E-02
32	GO:0009055: electron carrier activity	4.04E-02
33	GO:0004519: endonuclease activity	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.58E-05
3	GO:0030286: dynein complex	2.85E-04
4	GO:0034707: chloride channel complex	4.48E-04
5	GO:0005819: spindle	4.81E-04
6	GO:0000123: histone acetyltransferase complex	6.27E-04
7	GO:0016324: apical plasma membrane	1.13E-03
8	GO:0009535: chloroplast thylakoid membrane	1.66E-03
9	GO:0005875: microtubule associated complex	1.85E-03
10	GO:0000419: DNA-directed RNA polymerase V complex	1.85E-03
11	GO:0043234: protein complex	1.85E-03
12	GO:0019005: SCF ubiquitin ligase complex	5.60E-03
13	GO:0009507: chloroplast	6.02E-03
14	GO:0009706: chloroplast inner membrane	1.24E-02
15	GO:0005874: microtubule	2.84E-02
16	GO:0043231: intracellular membrane-bounded organelle	4.12E-02