co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G04410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
2	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
3	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
4	GO:0032928: regulation of superoxide anion generation	0.00E+00
5	GO:0006720: isoprenoid metabolic process	0.00E+00
6	GO:0018293: protein-FAD linkage	0.00E+00
7	GO:0034553: mitochondrial respiratory chain complex II assembly	0.00E+00
8	GO:0032780: negative regulation of ATPase activity	0.00E+00
9	GO:0046294: formaldehyde catabolic process	0.00E+00
10	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
11	GO:1990592: protein K69-linked ufmylation	0.00E+00
12	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
13	GO:0055114: oxidation-reduction process	6.95E-08
14	GO:0019509: L-methionine salvage from methylthioadenosine	2.36E-06
15	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	2.36E-06
16	GO:0009853: photorespiration	6.74E-06
17	GO:0033365: protein localization to organelle	1.10E-04
18	GO:0006555: methionine metabolic process	1.10E-04
19	GO:0006099: tricarboxylic acid cycle	1.14E-04
20	GO:0032956: regulation of actin cytoskeleton organization	2.65E-04
21	GO:0016487: farnesol metabolic process	2.65E-04
22	GO:0016031: tRNA import into mitochondrion	2.65E-04
23	GO:0009240: isopentenyl diphosphate biosynthetic process	2.65E-04
24	GO:0071266: 'de novo' L-methionine biosynthetic process	2.65E-04
25	GO:0019346: transsulfuration	2.65E-04
26	GO:0019343: cysteine biosynthetic process via cystathionine	2.65E-04
27	GO:0048571: long-day photoperiodism	5.83E-04
28	GO:0050992: dimethylallyl diphosphate biosynthetic process	5.83E-04
29	GO:0080183: response to photooxidative stress	5.83E-04
30	GO:0016122: xanthophyll metabolic process	5.83E-04
31	GO:2000030: regulation of response to red or far red light	5.83E-04
32	GO:2000071: regulation of defense response by callose deposition	5.83E-04
33	GO:1901562: response to paraquat	9.47E-04
34	GO:0031929: TOR signaling	9.47E-04
35	GO:0015940: pantothenate biosynthetic process	9.47E-04
36	GO:0006760: folic acid-containing compound metabolic process	9.47E-04
37	GO:0010351: lithium ion transport	9.47E-04
38	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	9.47E-04
39	GO:0019419: sulfate reduction	9.47E-04
40	GO:1901332: negative regulation of lateral root development	1.35E-03
41	GO:0009399: nitrogen fixation	1.35E-03
42	GO:0016226: iron-sulfur cluster assembly	1.58E-03
43	GO:0000003: reproduction	1.81E-03
44	GO:0034613: cellular protein localization	1.81E-03
45	GO:0006542: glutamine biosynthetic process	1.81E-03
46	GO:0070534: protein K63-linked ubiquitination	1.81E-03
47	GO:0006221: pyrimidine nucleotide biosynthetic process	1.81E-03
48	GO:0015991: ATP hydrolysis coupled proton transport	2.19E-03
49	GO:0098719: sodium ion import across plasma membrane	2.31E-03
50	GO:0010117: photoprotection	2.31E-03
51	GO:0018344: protein geranylgeranylation	2.31E-03
52	GO:0006796: phosphate-containing compound metabolic process	2.85E-03
53	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.85E-03
54	GO:0006301: postreplication repair	2.85E-03
55	GO:0016070: RNA metabolic process	2.85E-03
56	GO:0031053: primary miRNA processing	2.85E-03
57	GO:0007035: vacuolar acidification	2.85E-03
58	GO:0010016: shoot system morphogenesis	3.43E-03
59	GO:0010189: vitamin E biosynthetic process	3.43E-03
60	GO:1901001: negative regulation of response to salt stress	3.43E-03
61	GO:0010038: response to metal ion	4.04E-03
62	GO:0050790: regulation of catalytic activity	4.04E-03
63	GO:0009396: folic acid-containing compound biosynthetic process	4.04E-03
64	GO:0045292: mRNA cis splicing, via spliceosome	4.69E-03
65	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.69E-03
66	GO:0022900: electron transport chain	5.37E-03
67	GO:0015996: chlorophyll catabolic process	5.37E-03
68	GO:0009880: embryonic pattern specification	5.37E-03
69	GO:0009651: response to salt stress	5.56E-03
70	GO:0006754: ATP biosynthetic process	6.09E-03
71	GO:0046685: response to arsenic-containing substance	6.09E-03
72	GO:0051453: regulation of intracellular pH	6.83E-03
73	GO:0035999: tetrahydrofolate interconversion	6.83E-03
74	GO:0000103: sulfate assimilation	7.61E-03
75	GO:0009688: abscisic acid biosynthetic process	7.61E-03
76	GO:0043085: positive regulation of catalytic activity	8.42E-03
77	GO:0006879: cellular iron ion homeostasis	8.42E-03
78	GO:0009682: induced systemic resistance	8.42E-03
79	GO:0006829: zinc II ion transport	1.01E-02
80	GO:0048440: carpel development	1.10E-02
81	GO:0006970: response to osmotic stress	1.13E-02
82	GO:0019853: L-ascorbic acid biosynthetic process	1.20E-02
83	GO:0010039: response to iron ion	1.20E-02
84	GO:0009225: nucleotide-sugar metabolic process	1.20E-02
85	GO:0006979: response to oxidative stress	1.20E-02
86	GO:0080167: response to karrikin	1.35E-02
87	GO:2000377: regulation of reactive oxygen species metabolic process	1.39E-02
88	GO:0006487: protein N-linked glycosylation	1.39E-02
89	GO:0019344: cysteine biosynthetic process	1.39E-02
90	GO:0009116: nucleoside metabolic process	1.39E-02
91	GO:0008299: isoprenoid biosynthetic process	1.49E-02
92	GO:0015992: proton transport	1.59E-02
93	GO:0010431: seed maturation	1.59E-02
94	GO:0019915: lipid storage	1.59E-02
95	GO:0061077: chaperone-mediated protein folding	1.59E-02
96	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.70E-02
97	GO:0007005: mitochondrion organization	1.70E-02
98	GO:0045454: cell redox homeostasis	1.70E-02
99	GO:0015031: protein transport	1.79E-02
100	GO:0001944: vasculature development	1.81E-02
101	GO:0006012: galactose metabolic process	1.81E-02
102	GO:0032259: methylation	2.09E-02
103	GO:0080022: primary root development	2.15E-02
104	GO:0010051: xylem and phloem pattern formation	2.15E-02
105	GO:0010118: stomatal movement	2.15E-02
106	GO:0006662: glycerol ether metabolic process	2.26E-02
107	GO:0015986: ATP synthesis coupled proton transport	2.38E-02
108	GO:0006814: sodium ion transport	2.38E-02
109	GO:0008654: phospholipid biosynthetic process	2.51E-02
110	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.63E-02
111	GO:0002229: defense response to oomycetes	2.63E-02
112	GO:0030163: protein catabolic process	2.88E-02
113	GO:0006914: autophagy	3.02E-02
114	GO:0071805: potassium ion transmembrane transport	3.15E-02
115	GO:0016579: protein deubiquitination	3.28E-02
116	GO:0042128: nitrate assimilation	3.70E-02
117	GO:0006950: response to stress	3.84E-02
118	GO:0015995: chlorophyll biosynthetic process	3.84E-02
119	GO:0009737: response to abscisic acid	4.23E-02
120	GO:0010311: lateral root formation	4.28E-02
121	GO:0009407: toxin catabolic process	4.43E-02
122	GO:0010043: response to zinc ion	4.58E-02
123	GO:0048527: lateral root development	4.58E-02
124	GO:0035556: intracellular signal transduction	4.80E-02
125	GO:0009867: jasmonic acid mediated signaling pathway	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
3	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
4	GO:0042030: ATPase inhibitor activity	0.00E+00
5	GO:0052670: geraniol kinase activity	0.00E+00
6	GO:0052668: farnesol kinase activity	0.00E+00
7	GO:0050342: tocopherol O-methyltransferase activity	0.00E+00
8	GO:0047918: GDP-mannose 3,5-epimerase activity	0.00E+00
9	GO:0052671: geranylgeraniol kinase activity	0.00E+00
10	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
11	GO:0016491: oxidoreductase activity	5.95E-06
12	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	1.17E-05
13	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	2.65E-04
14	GO:0019707: protein-cysteine S-acyltransferase activity	2.65E-04
15	GO:0030611: arsenate reductase activity	2.65E-04
16	GO:0008782: adenosylhomocysteine nucleosidase activity	2.65E-04
17	GO:0008930: methylthioadenosine nucleosidase activity	2.65E-04
18	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.65E-04
19	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	2.65E-04
20	GO:0004123: cystathionine gamma-lyase activity	2.65E-04
21	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	2.65E-04
22	GO:0016776: phosphotransferase activity, phosphate group as acceptor	2.65E-04
23	GO:0004121: cystathionine beta-lyase activity	2.65E-04
24	GO:0008137: NADH dehydrogenase (ubiquinone) activity	3.07E-04
25	GO:0003824: catalytic activity	3.81E-04
26	GO:0047617: acyl-CoA hydrolase activity	4.44E-04
27	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	5.83E-04
28	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	5.83E-04
29	GO:0004046: aminoacylase activity	5.83E-04
30	GO:0009973: adenylyl-sulfate reductase activity	5.83E-04
31	GO:0004129: cytochrome-c oxidase activity	5.99E-04
32	GO:0015266: protein channel activity	7.76E-04
33	GO:0003962: cystathionine gamma-synthase activity	9.47E-04
34	GO:0008265: Mo-molybdopterin cofactor sulfurase activity	9.47E-04
35	GO:0004848: ureidoglycolate hydrolase activity	9.47E-04
36	GO:0004663: Rab geranylgeranyltransferase activity	9.47E-04
37	GO:0005528: FK506 binding	1.20E-03
38	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.35E-03
39	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.35E-03
40	GO:0000339: RNA cap binding	1.35E-03
41	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.35E-03
42	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.56E-03
43	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.81E-03
44	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.81E-03
45	GO:0016788: hydrolase activity, acting on ester bonds	2.21E-03
46	GO:0008177: succinate dehydrogenase (ubiquinone) activity	2.31E-03
47	GO:0005496: steroid binding	2.31E-03
48	GO:0004356: glutamate-ammonia ligase activity	2.31E-03
49	GO:0030151: molybdenum ion binding	2.31E-03
50	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.36E-03
51	GO:0016853: isomerase activity	2.53E-03
52	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	2.85E-03
53	GO:0015081: sodium ion transmembrane transporter activity	2.85E-03
54	GO:0004605: phosphatidate cytidylyltransferase activity	2.85E-03
55	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.30E-03
56	GO:0051920: peroxiredoxin activity	3.43E-03
57	GO:0070300: phosphatidic acid binding	3.43E-03
58	GO:0004427: inorganic diphosphatase activity	4.04E-03
59	GO:0008121: ubiquinol-cytochrome-c reductase activity	4.04E-03
60	GO:0016209: antioxidant activity	4.69E-03
61	GO:0004034: aldose 1-epimerase activity	4.69E-03
62	GO:0015078: hydrogen ion transmembrane transporter activity	5.37E-03
63	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.46E-03
64	GO:0016787: hydrolase activity	5.64E-03
65	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	6.09E-03
66	GO:0071949: FAD binding	6.09E-03
67	GO:0008047: enzyme activator activity	7.61E-03
68	GO:0046961: proton-transporting ATPase activity, rotational mechanism	8.42E-03
69	GO:0015386: potassium:proton antiporter activity	8.42E-03
70	GO:0008794: arsenate reductase (glutaredoxin) activity	8.42E-03
71	GO:0004089: carbonate dehydratase activity	1.01E-02
72	GO:0031072: heat shock protein binding	1.01E-02
73	GO:0004601: peroxidase activity	1.03E-02
74	GO:0004725: protein tyrosine phosphatase activity	1.29E-02
75	GO:0051536: iron-sulfur cluster binding	1.39E-02
76	GO:0022891: substrate-specific transmembrane transporter activity	1.81E-02
77	GO:0047134: protein-disulfide reductase activity	2.03E-02
78	GO:0004527: exonuclease activity	2.26E-02
79	GO:0046873: metal ion transmembrane transporter activity	2.26E-02
80	GO:0004791: thioredoxin-disulfide reductase activity	2.38E-02
81	GO:0030170: pyridoxal phosphate binding	2.40E-02
82	GO:0048038: quinone binding	2.63E-02
83	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.63E-02
84	GO:0004197: cysteine-type endopeptidase activity	2.76E-02
85	GO:0015385: sodium:proton antiporter activity	2.88E-02
86	GO:0005515: protein binding	3.40E-02
87	GO:0004806: triglyceride lipase activity	3.84E-02
88	GO:0008168: methyltransferase activity	4.43E-02
89	GO:0050897: cobalt ion binding	4.58E-02
90	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0005747: mitochondrial respiratory chain complex I	4.04E-15
3	GO:0045271: respiratory chain complex I	3.36E-06
4	GO:0045273: respiratory chain complex II	5.79E-06
5	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	5.79E-06
6	GO:0009507: chloroplast	5.63E-05
7	GO:0031966: mitochondrial membrane	2.45E-04
8	GO:0005845: mRNA cap binding complex	2.65E-04
9	GO:0031972: chloroplast intermembrane space	2.65E-04
10	GO:0031932: TORC2 complex	2.65E-04
11	GO:0005739: mitochondrion	4.78E-04
12	GO:0005846: nuclear cap binding complex	5.83E-04
13	GO:0005750: mitochondrial respiratory chain complex III	8.73E-04
14	GO:0031931: TORC1 complex	9.47E-04
15	GO:0005737: cytoplasm	1.00E-03
16	GO:0005758: mitochondrial intermembrane space	1.20E-03
17	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.35E-03
18	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.81E-03
19	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.81E-03
20	GO:0009527: plastid outer membrane	1.81E-03
21	GO:0031372: UBC13-MMS2 complex	1.81E-03
22	GO:0009517: PSII associated light-harvesting complex II	1.81E-03
23	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.81E-03
24	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.87E-03
25	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	2.31E-03
26	GO:0005746: mitochondrial respiratory chain	2.31E-03
27	GO:0031463: Cul3-RING ubiquitin ligase complex	2.85E-03
28	GO:0009840: chloroplastic endopeptidase Clp complex	3.43E-03
29	GO:0005777: peroxisome	4.40E-03
30	GO:0005829: cytosol	4.64E-03
31	GO:0000421: autophagosome membrane	4.69E-03
32	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.09E-03
33	GO:0005773: vacuole	6.55E-03
34	GO:0005765: lysosomal membrane	8.42E-03
35	GO:0005764: lysosome	1.10E-02
36	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.20E-02
37	GO:0031969: chloroplast membrane	1.35E-02
38	GO:0009532: plastid stroma	1.59E-02
39	GO:0031410: cytoplasmic vesicle	1.70E-02
40	GO:0009543: chloroplast thylakoid lumen	2.16E-02
41	GO:0009570: chloroplast stroma	2.58E-02
42	GO:0005759: mitochondrial matrix	2.72E-02
43	GO:0005783: endoplasmic reticulum	2.96E-02
44	GO:0032580: Golgi cisterna membrane	3.02E-02
45	GO:0005778: peroxisomal membrane	3.15E-02
46	GO:0005615: extracellular space	3.33E-02
47	GO:0005774: vacuolar membrane	3.90E-02
48	GO:0000325: plant-type vacuole	4.58E-02