GO Enrichment Analysis of Co-expressed Genes with
AT2G04270
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080127: fruit septum development | 0.00E+00 |
| 2 | GO:0016071: mRNA metabolic process | 0.00E+00 |
| 3 | GO:0042493: response to drug | 0.00E+00 |
| 4 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 5 | GO:0007172: signal complex assembly | 0.00E+00 |
| 6 | GO:0010493: Lewis a epitope biosynthetic process | 8.78E-05 |
| 7 | GO:0000476: maturation of 4.5S rRNA | 8.78E-05 |
| 8 | GO:0000967: rRNA 5'-end processing | 8.78E-05 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 1.25E-04 |
| 10 | GO:0018026: peptidyl-lysine monomethylation | 2.08E-04 |
| 11 | GO:0080181: lateral root branching | 2.08E-04 |
| 12 | GO:0034470: ncRNA processing | 2.08E-04 |
| 13 | GO:0071398: cellular response to fatty acid | 3.48E-04 |
| 14 | GO:0005977: glycogen metabolic process | 3.48E-04 |
| 15 | GO:0009405: pathogenesis | 3.48E-04 |
| 16 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 5.01E-04 |
| 17 | GO:0009650: UV protection | 5.01E-04 |
| 18 | GO:0010021: amylopectin biosynthetic process | 6.66E-04 |
| 19 | GO:0022622: root system development | 6.66E-04 |
| 20 | GO:0006465: signal peptide processing | 8.44E-04 |
| 21 | GO:0010027: thylakoid membrane organization | 9.37E-04 |
| 22 | GO:0042793: transcription from plastid promoter | 1.03E-03 |
| 23 | GO:0003006: developmental process involved in reproduction | 1.03E-03 |
| 24 | GO:0042549: photosystem II stabilization | 1.03E-03 |
| 25 | GO:0015995: chlorophyll biosynthetic process | 1.09E-03 |
| 26 | GO:0030488: tRNA methylation | 1.23E-03 |
| 27 | GO:1901259: chloroplast rRNA processing | 1.23E-03 |
| 28 | GO:0032880: regulation of protein localization | 1.44E-03 |
| 29 | GO:0009658: chloroplast organization | 1.45E-03 |
| 30 | GO:0000105: histidine biosynthetic process | 1.66E-03 |
| 31 | GO:0016559: peroxisome fission | 1.66E-03 |
| 32 | GO:0048507: meristem development | 2.14E-03 |
| 33 | GO:0006779: porphyrin-containing compound biosynthetic process | 2.39E-03 |
| 34 | GO:0006782: protoporphyrinogen IX biosynthetic process | 2.65E-03 |
| 35 | GO:0009089: lysine biosynthetic process via diaminopimelate | 2.93E-03 |
| 36 | GO:0019684: photosynthesis, light reaction | 2.93E-03 |
| 37 | GO:0005983: starch catabolic process | 3.21E-03 |
| 38 | GO:0010582: floral meristem determinacy | 3.21E-03 |
| 39 | GO:0010628: positive regulation of gene expression | 3.50E-03 |
| 40 | GO:2000012: regulation of auxin polar transport | 3.50E-03 |
| 41 | GO:0010207: photosystem II assembly | 3.80E-03 |
| 42 | GO:0009266: response to temperature stimulus | 3.80E-03 |
| 43 | GO:0009934: regulation of meristem structural organization | 3.80E-03 |
| 44 | GO:0006302: double-strand break repair | 3.80E-03 |
| 45 | GO:0048467: gynoecium development | 3.80E-03 |
| 46 | GO:0010020: chloroplast fission | 3.80E-03 |
| 47 | GO:0019853: L-ascorbic acid biosynthetic process | 4.10E-03 |
| 48 | GO:0010030: positive regulation of seed germination | 4.10E-03 |
| 49 | GO:0006636: unsaturated fatty acid biosynthetic process | 4.42E-03 |
| 50 | GO:0000162: tryptophan biosynthetic process | 4.42E-03 |
| 51 | GO:0051321: meiotic cell cycle | 5.42E-03 |
| 52 | GO:0048511: rhythmic process | 5.42E-03 |
| 53 | GO:0009411: response to UV | 6.12E-03 |
| 54 | GO:0071369: cellular response to ethylene stimulus | 6.12E-03 |
| 55 | GO:0006012: galactose metabolic process | 6.12E-03 |
| 56 | GO:0009693: ethylene biosynthetic process | 6.12E-03 |
| 57 | GO:0005975: carbohydrate metabolic process | 6.74E-03 |
| 58 | GO:0008284: positive regulation of cell proliferation | 6.86E-03 |
| 59 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 6.86E-03 |
| 60 | GO:0042631: cellular response to water deprivation | 7.24E-03 |
| 61 | GO:0009958: positive gravitropism | 7.62E-03 |
| 62 | GO:0042752: regulation of circadian rhythm | 8.02E-03 |
| 63 | GO:0019252: starch biosynthetic process | 8.42E-03 |
| 64 | GO:0032502: developmental process | 9.24E-03 |
| 65 | GO:0009627: systemic acquired resistance | 1.24E-02 |
| 66 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.26E-02 |
| 67 | GO:0016311: dephosphorylation | 1.33E-02 |
| 68 | GO:0044550: secondary metabolite biosynthetic process | 1.33E-02 |
| 69 | GO:0015979: photosynthesis | 1.39E-02 |
| 70 | GO:0009631: cold acclimation | 1.53E-02 |
| 71 | GO:0048527: lateral root development | 1.53E-02 |
| 72 | GO:0006629: lipid metabolic process | 1.81E-02 |
| 73 | GO:0055114: oxidation-reduction process | 2.39E-02 |
| 74 | GO:0006364: rRNA processing | 2.41E-02 |
| 75 | GO:0006486: protein glycosylation | 2.41E-02 |
| 76 | GO:0006417: regulation of translation | 2.60E-02 |
| 77 | GO:0006396: RNA processing | 3.17E-02 |
| 78 | GO:0009416: response to light stimulus | 3.21E-02 |
| 79 | GO:0007165: signal transduction | 3.94E-02 |
| 80 | GO:0009790: embryo development | 4.06E-02 |
| 81 | GO:0006633: fatty acid biosynthetic process | 4.28E-02 |
| 82 | GO:0006413: translational initiation | 4.35E-02 |
| 83 | GO:0007623: circadian rhythm | 4.58E-02 |
| 84 | GO:0045490: pectin catabolic process | 4.58E-02 |
| 85 | GO:0009451: RNA modification | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 2 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 3 | GO:0004033: aldo-keto reductase (NADP) activity | 4.65E-05 |
| 4 | GO:0019203: carbohydrate phosphatase activity | 8.78E-05 |
| 5 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 8.78E-05 |
| 6 | GO:0046920: alpha-(1->3)-fucosyltransferase activity | 8.78E-05 |
| 7 | GO:0050308: sugar-phosphatase activity | 8.78E-05 |
| 8 | GO:0019156: isoamylase activity | 2.08E-04 |
| 9 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 2.08E-04 |
| 10 | GO:0042389: omega-3 fatty acid desaturase activity | 2.08E-04 |
| 11 | GO:0016868: intramolecular transferase activity, phosphotransferases | 2.08E-04 |
| 12 | GO:0090729: toxin activity | 3.48E-04 |
| 13 | GO:0016851: magnesium chelatase activity | 5.01E-04 |
| 14 | GO:0016279: protein-lysine N-methyltransferase activity | 6.66E-04 |
| 15 | GO:0080032: methyl jasmonate esterase activity | 6.66E-04 |
| 16 | GO:0004556: alpha-amylase activity | 1.03E-03 |
| 17 | GO:2001070: starch binding | 1.03E-03 |
| 18 | GO:0080030: methyl indole-3-acetate esterase activity | 1.03E-03 |
| 19 | GO:0042578: phosphoric ester hydrolase activity | 1.03E-03 |
| 20 | GO:0008195: phosphatidate phosphatase activity | 1.23E-03 |
| 21 | GO:0003993: acid phosphatase activity | 1.58E-03 |
| 22 | GO:0008173: RNA methyltransferase activity | 1.89E-03 |
| 23 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 1.89E-03 |
| 24 | GO:0043621: protein self-association | 2.10E-03 |
| 25 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 2.14E-03 |
| 26 | GO:0008417: fucosyltransferase activity | 2.14E-03 |
| 27 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 2.14E-03 |
| 28 | GO:0015020: glucuronosyltransferase activity | 2.65E-03 |
| 29 | GO:0008083: growth factor activity | 3.80E-03 |
| 30 | GO:0031418: L-ascorbic acid binding | 4.74E-03 |
| 31 | GO:0033612: receptor serine/threonine kinase binding | 5.42E-03 |
| 32 | GO:0008408: 3'-5' exonuclease activity | 5.42E-03 |
| 33 | GO:0030570: pectate lyase activity | 6.12E-03 |
| 34 | GO:0008017: microtubule binding | 6.65E-03 |
| 35 | GO:0005199: structural constituent of cell wall | 7.62E-03 |
| 36 | GO:0016788: hydrolase activity, acting on ester bonds | 1.00E-02 |
| 37 | GO:0008483: transaminase activity | 1.05E-02 |
| 38 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.05E-02 |
| 39 | GO:0005525: GTP binding | 1.21E-02 |
| 40 | GO:0030145: manganese ion binding | 1.53E-02 |
| 41 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 1.58E-02 |
| 42 | GO:0004722: protein serine/threonine phosphatase activity | 1.61E-02 |
| 43 | GO:0003924: GTPase activity | 1.81E-02 |
| 44 | GO:0004519: endonuclease activity | 1.97E-02 |
| 45 | GO:0051537: 2 iron, 2 sulfur cluster binding | 2.06E-02 |
| 46 | GO:0005198: structural molecule activity | 2.12E-02 |
| 47 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.18E-02 |
| 48 | GO:0016298: lipase activity | 2.47E-02 |
| 49 | GO:0080043: quercetin 3-O-glucosyltransferase activity | 2.91E-02 |
| 50 | GO:0080044: quercetin 7-O-glucosyltransferase activity | 2.91E-02 |
| 51 | GO:0000166: nucleotide binding | 3.21E-02 |
| 52 | GO:0016758: transferase activity, transferring hexosyl groups | 3.57E-02 |
| 53 | GO:0019843: rRNA binding | 3.64E-02 |
| 54 | GO:0030170: pyridoxal phosphate binding | 3.92E-02 |
| 55 | GO:0004252: serine-type endopeptidase activity | 3.92E-02 |
| 56 | GO:0008194: UDP-glycosyltransferase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.68E-14 |
| 3 | GO:0005787: signal peptidase complex | 8.78E-05 |
| 4 | GO:0000791: euchromatin | 8.78E-05 |
| 5 | GO:0009570: chloroplast stroma | 1.76E-04 |
| 6 | GO:0030870: Mre11 complex | 2.08E-04 |
| 7 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 2.08E-04 |
| 8 | GO:0010007: magnesium chelatase complex | 3.48E-04 |
| 9 | GO:0042646: plastid nucleoid | 5.01E-04 |
| 10 | GO:0009535: chloroplast thylakoid membrane | 8.20E-04 |
| 11 | GO:0000795: synaptonemal complex | 8.44E-04 |
| 12 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.14E-03 |
| 13 | GO:0042644: chloroplast nucleoid | 2.14E-03 |
| 14 | GO:0055028: cortical microtubule | 2.65E-03 |
| 15 | GO:0009508: plastid chromosome | 3.50E-03 |
| 16 | GO:0010287: plastoglobule | 4.37E-03 |
| 17 | GO:0009534: chloroplast thylakoid | 8.19E-03 |
| 18 | GO:0000785: chromatin | 9.24E-03 |
| 19 | GO:0032580: Golgi cisterna membrane | 1.01E-02 |
| 20 | GO:0009295: nucleoid | 1.05E-02 |
| 21 | GO:0005874: microtubule | 1.18E-02 |
| 22 | GO:0031969: chloroplast membrane | 1.22E-02 |
| 23 | GO:0009707: chloroplast outer membrane | 1.38E-02 |
| 24 | GO:0000325: plant-type vacuole | 1.53E-02 |
| 25 | GO:0043231: intracellular membrane-bounded organelle | 1.99E-02 |
| 26 | GO:0005834: heterotrimeric G-protein complex | 2.84E-02 |
| 27 | GO:0009706: chloroplast inner membrane | 3.10E-02 |
| 28 | GO:0009941: chloroplast envelope | 3.64E-02 |
| 29 | GO:0009543: chloroplast thylakoid lumen | 3.64E-02 |
| 30 | GO:0005615: extracellular space | 4.95E-02 |