GO Enrichment Analysis of Co-expressed Genes with
AT2G04039
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 2 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 3 | GO:1901401: regulation of tetrapyrrole metabolic process | 0.00E+00 |
| 4 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 5 | GO:0098586: cellular response to virus | 0.00E+00 |
| 6 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 7 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 8 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 9 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 10 | GO:0019265: glycine biosynthetic process, by transamination of glyoxylate | 0.00E+00 |
| 11 | GO:0015979: photosynthesis | 3.39E-07 |
| 12 | GO:0018298: protein-chromophore linkage | 1.07E-06 |
| 13 | GO:0042853: L-alanine catabolic process | 1.74E-06 |
| 14 | GO:0090391: granum assembly | 6.40E-06 |
| 15 | GO:0015995: chlorophyll biosynthetic process | 2.25E-05 |
| 16 | GO:0019253: reductive pentose-phosphate cycle | 2.39E-05 |
| 17 | GO:0009902: chloroplast relocation | 2.72E-05 |
| 18 | GO:0009644: response to high light intensity | 8.27E-05 |
| 19 | GO:0010189: vitamin E biosynthetic process | 9.02E-05 |
| 20 | GO:0048564: photosystem I assembly | 1.53E-04 |
| 21 | GO:0009658: chloroplast organization | 1.76E-04 |
| 22 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.91E-04 |
| 23 | GO:1904964: positive regulation of phytol biosynthetic process | 1.91E-04 |
| 24 | GO:0010028: xanthophyll cycle | 1.91E-04 |
| 25 | GO:0010362: negative regulation of anion channel activity by blue light | 1.91E-04 |
| 26 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.91E-04 |
| 27 | GO:0031426: polycistronic mRNA processing | 1.91E-04 |
| 28 | GO:0051775: response to redox state | 1.91E-04 |
| 29 | GO:0071277: cellular response to calcium ion | 1.91E-04 |
| 30 | GO:0030187: melatonin biosynthetic process | 4.29E-04 |
| 31 | GO:0000256: allantoin catabolic process | 4.29E-04 |
| 32 | GO:0016122: xanthophyll metabolic process | 4.29E-04 |
| 33 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.29E-04 |
| 34 | GO:0046741: transport of virus in host, tissue to tissue | 4.29E-04 |
| 35 | GO:0009915: phloem sucrose loading | 4.29E-04 |
| 36 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.29E-04 |
| 37 | GO:0042548: regulation of photosynthesis, light reaction | 4.29E-04 |
| 38 | GO:0080005: photosystem stoichiometry adjustment | 4.29E-04 |
| 39 | GO:0006006: glucose metabolic process | 4.93E-04 |
| 40 | GO:0009767: photosynthetic electron transport chain | 4.93E-04 |
| 41 | GO:0005986: sucrose biosynthetic process | 4.93E-04 |
| 42 | GO:0009853: photorespiration | 5.21E-04 |
| 43 | GO:0007623: circadian rhythm | 5.43E-04 |
| 44 | GO:0010207: photosystem II assembly | 5.55E-04 |
| 45 | GO:0006000: fructose metabolic process | 6.99E-04 |
| 46 | GO:0009405: pathogenesis | 6.99E-04 |
| 47 | GO:0010136: ureide catabolic process | 6.99E-04 |
| 48 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.41E-04 |
| 49 | GO:0055114: oxidation-reduction process | 8.47E-04 |
| 50 | GO:0043572: plastid fission | 9.97E-04 |
| 51 | GO:0071484: cellular response to light intensity | 9.97E-04 |
| 52 | GO:0006107: oxaloacetate metabolic process | 9.97E-04 |
| 53 | GO:0010239: chloroplast mRNA processing | 9.97E-04 |
| 54 | GO:0006145: purine nucleobase catabolic process | 9.97E-04 |
| 55 | GO:0042989: sequestering of actin monomers | 9.97E-04 |
| 56 | GO:0046739: transport of virus in multicellular host | 9.97E-04 |
| 57 | GO:0009735: response to cytokinin | 1.28E-03 |
| 58 | GO:0006021: inositol biosynthetic process | 1.32E-03 |
| 59 | GO:0006734: NADH metabolic process | 1.32E-03 |
| 60 | GO:0006545: glycine biosynthetic process | 1.32E-03 |
| 61 | GO:0015994: chlorophyll metabolic process | 1.32E-03 |
| 62 | GO:0080167: response to karrikin | 1.45E-03 |
| 63 | GO:0009416: response to light stimulus | 1.50E-03 |
| 64 | GO:0010117: photoprotection | 1.68E-03 |
| 65 | GO:0030041: actin filament polymerization | 1.68E-03 |
| 66 | GO:0009791: post-embryonic development | 1.71E-03 |
| 67 | GO:0009117: nucleotide metabolic process | 2.07E-03 |
| 68 | GO:0009643: photosynthetic acclimation | 2.07E-03 |
| 69 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.07E-03 |
| 70 | GO:0046855: inositol phosphate dephosphorylation | 2.07E-03 |
| 71 | GO:0009648: photoperiodism | 2.49E-03 |
| 72 | GO:0071470: cellular response to osmotic stress | 2.49E-03 |
| 73 | GO:0010027: thylakoid membrane organization | 2.63E-03 |
| 74 | GO:0051510: regulation of unidimensional cell growth | 2.93E-03 |
| 75 | GO:0048528: post-embryonic root development | 2.93E-03 |
| 76 | GO:0010196: nonphotochemical quenching | 2.93E-03 |
| 77 | GO:0009645: response to low light intensity stimulus | 2.93E-03 |
| 78 | GO:0006413: translational initiation | 2.95E-03 |
| 79 | GO:0009704: de-etiolation | 3.40E-03 |
| 80 | GO:0009642: response to light intensity | 3.40E-03 |
| 81 | GO:0006811: ion transport | 3.77E-03 |
| 82 | GO:0006002: fructose 6-phosphate metabolic process | 3.88E-03 |
| 83 | GO:0071482: cellular response to light stimulus | 3.88E-03 |
| 84 | GO:0009657: plastid organization | 3.88E-03 |
| 85 | GO:0007568: aging | 3.95E-03 |
| 86 | GO:0009637: response to blue light | 4.33E-03 |
| 87 | GO:0000373: Group II intron splicing | 4.40E-03 |
| 88 | GO:0098656: anion transmembrane transport | 4.40E-03 |
| 89 | GO:0009245: lipid A biosynthetic process | 4.40E-03 |
| 90 | GO:0009821: alkaloid biosynthetic process | 4.40E-03 |
| 91 | GO:0048507: meristem development | 4.40E-03 |
| 92 | GO:0090333: regulation of stomatal closure | 4.40E-03 |
| 93 | GO:0009638: phototropism | 4.93E-03 |
| 94 | GO:0009098: leucine biosynthetic process | 4.93E-03 |
| 95 | GO:0009641: shade avoidance | 5.48E-03 |
| 96 | GO:0006259: DNA metabolic process | 5.48E-03 |
| 97 | GO:0009970: cellular response to sulfate starvation | 5.48E-03 |
| 98 | GO:0006995: cellular response to nitrogen starvation | 5.48E-03 |
| 99 | GO:0010114: response to red light | 5.57E-03 |
| 100 | GO:0018119: peptidyl-cysteine S-nitrosylation | 6.06E-03 |
| 101 | GO:0009773: photosynthetic electron transport in photosystem I | 6.06E-03 |
| 102 | GO:0006265: DNA topological change | 6.06E-03 |
| 103 | GO:0006790: sulfur compound metabolic process | 6.66E-03 |
| 104 | GO:0006108: malate metabolic process | 7.28E-03 |
| 105 | GO:0006094: gluconeogenesis | 7.28E-03 |
| 106 | GO:0010223: secondary shoot formation | 7.91E-03 |
| 107 | GO:0009266: response to temperature stimulus | 7.91E-03 |
| 108 | GO:0010020: chloroplast fission | 7.91E-03 |
| 109 | GO:0090351: seedling development | 8.57E-03 |
| 110 | GO:0046854: phosphatidylinositol phosphorylation | 8.57E-03 |
| 111 | GO:0019853: L-ascorbic acid biosynthetic process | 8.57E-03 |
| 112 | GO:0009409: response to cold | 8.76E-03 |
| 113 | GO:0006096: glycolytic process | 8.88E-03 |
| 114 | GO:0055085: transmembrane transport | 9.00E-03 |
| 115 | GO:0006833: water transport | 9.25E-03 |
| 116 | GO:0007010: cytoskeleton organization | 9.94E-03 |
| 117 | GO:0006825: copper ion transport | 1.07E-02 |
| 118 | GO:0051302: regulation of cell division | 1.07E-02 |
| 119 | GO:0008299: isoprenoid biosynthetic process | 1.07E-02 |
| 120 | GO:0019748: secondary metabolic process | 1.21E-02 |
| 121 | GO:0009306: protein secretion | 1.37E-02 |
| 122 | GO:0009058: biosynthetic process | 1.42E-02 |
| 123 | GO:0009845: seed germination | 1.45E-02 |
| 124 | GO:0034220: ion transmembrane transport | 1.53E-02 |
| 125 | GO:0010118: stomatal movement | 1.53E-02 |
| 126 | GO:0006606: protein import into nucleus | 1.53E-02 |
| 127 | GO:0042335: cuticle development | 1.53E-02 |
| 128 | GO:0007059: chromosome segregation | 1.70E-02 |
| 129 | GO:0019252: starch biosynthetic process | 1.79E-02 |
| 130 | GO:0000302: response to reactive oxygen species | 1.88E-02 |
| 131 | GO:0016032: viral process | 1.97E-02 |
| 132 | GO:0019761: glucosinolate biosynthetic process | 1.97E-02 |
| 133 | GO:0010468: regulation of gene expression | 2.22E-02 |
| 134 | GO:0001666: response to hypoxia | 2.44E-02 |
| 135 | GO:0009627: systemic acquired resistance | 2.64E-02 |
| 136 | GO:0035556: intracellular signal transduction | 2.68E-02 |
| 137 | GO:0008219: cell death | 2.95E-02 |
| 138 | GO:0000160: phosphorelay signal transduction system | 3.05E-02 |
| 139 | GO:0010218: response to far red light | 3.16E-02 |
| 140 | GO:0048527: lateral root development | 3.27E-02 |
| 141 | GO:0006457: protein folding | 3.45E-02 |
| 142 | GO:0046686: response to cadmium ion | 3.49E-02 |
| 143 | GO:0016051: carbohydrate biosynthetic process | 3.49E-02 |
| 144 | GO:0034599: cellular response to oxidative stress | 3.60E-02 |
| 145 | GO:0006099: tricarboxylic acid cycle | 3.60E-02 |
| 146 | GO:0046777: protein autophosphorylation | 3.81E-02 |
| 147 | GO:0006631: fatty acid metabolic process | 3.94E-02 |
| 148 | GO:0042542: response to hydrogen peroxide | 4.06E-02 |
| 149 | GO:0009744: response to sucrose | 4.18E-02 |
| 150 | GO:0045454: cell redox homeostasis | 4.25E-02 |
| 151 | GO:0031347: regulation of defense response | 4.78E-02 |
| 152 | GO:0042538: hyperosmotic salinity response | 4.90E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 2 | GO:0003858: 3-hydroxybutyrate dehydrogenase activity | 0.00E+00 |
| 3 | GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity | 0.00E+00 |
| 4 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 5 | GO:0050281: serine-glyoxylate transaminase activity | 0.00E+00 |
| 6 | GO:0004059: aralkylamine N-acetyltransferase activity | 0.00E+00 |
| 7 | GO:0046554: malate dehydrogenase (NADP+) activity | 0.00E+00 |
| 8 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 9 | GO:0047958: glycine:2-oxoglutarate aminotransferase activity | 0.00E+00 |
| 10 | GO:0071522: ureidoglycine aminohydrolase activity | 0.00E+00 |
| 11 | GO:0009976: tocopherol cyclase activity | 0.00E+00 |
| 12 | GO:0004760: serine-pyruvate transaminase activity | 0.00E+00 |
| 13 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 14 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 15 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 16 | GO:0008453: alanine-glyoxylate transaminase activity | 1.30E-07 |
| 17 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 1.74E-06 |
| 18 | GO:0070402: NADPH binding | 6.40E-06 |
| 19 | GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity | 1.47E-05 |
| 20 | GO:0016168: chlorophyll binding | 1.80E-05 |
| 21 | GO:0000293: ferric-chelate reductase activity | 6.48E-05 |
| 22 | GO:0016853: isomerase activity | 1.32E-04 |
| 23 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.91E-04 |
| 24 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.91E-04 |
| 25 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 1.91E-04 |
| 26 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.91E-04 |
| 27 | GO:0035671: enone reductase activity | 1.91E-04 |
| 28 | GO:0004451: isocitrate lyase activity | 1.91E-04 |
| 29 | GO:0004008: copper-exporting ATPase activity | 1.91E-04 |
| 30 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 4.29E-04 |
| 31 | GO:0052832: inositol monophosphate 3-phosphatase activity | 4.29E-04 |
| 32 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.29E-04 |
| 33 | GO:0008934: inositol monophosphate 1-phosphatase activity | 4.29E-04 |
| 34 | GO:0052833: inositol monophosphate 4-phosphatase activity | 4.29E-04 |
| 35 | GO:0016491: oxidoreductase activity | 6.88E-04 |
| 36 | GO:0031409: pigment binding | 6.92E-04 |
| 37 | GO:0030267: glyoxylate reductase (NADP) activity | 6.99E-04 |
| 38 | GO:0004096: catalase activity | 6.99E-04 |
| 39 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 6.99E-04 |
| 40 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.99E-04 |
| 41 | GO:0003913: DNA photolyase activity | 6.99E-04 |
| 42 | GO:0004148: dihydrolipoyl dehydrogenase activity | 6.99E-04 |
| 43 | GO:0050307: sucrose-phosphate phosphatase activity | 6.99E-04 |
| 44 | GO:0051287: NAD binding | 9.10E-04 |
| 45 | GO:0009882: blue light photoreceptor activity | 9.97E-04 |
| 46 | GO:0048027: mRNA 5'-UTR binding | 9.97E-04 |
| 47 | GO:0035529: NADH pyrophosphatase activity | 9.97E-04 |
| 48 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 9.97E-04 |
| 49 | GO:0016851: magnesium chelatase activity | 9.97E-04 |
| 50 | GO:0004792: thiosulfate sulfurtransferase activity | 9.97E-04 |
| 51 | GO:0022891: substrate-specific transmembrane transporter activity | 1.09E-03 |
| 52 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.32E-03 |
| 53 | GO:0043495: protein anchor | 1.32E-03 |
| 54 | GO:0008080: N-acetyltransferase activity | 1.48E-03 |
| 55 | GO:0003785: actin monomer binding | 1.68E-03 |
| 56 | GO:0016462: pyrophosphatase activity | 2.07E-03 |
| 57 | GO:0016615: malate dehydrogenase activity | 2.07E-03 |
| 58 | GO:0042578: phosphoric ester hydrolase activity | 2.07E-03 |
| 59 | GO:0031177: phosphopantetheine binding | 2.07E-03 |
| 60 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.49E-03 |
| 61 | GO:0030060: L-malate dehydrogenase activity | 2.49E-03 |
| 62 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 2.49E-03 |
| 63 | GO:0000035: acyl binding | 2.49E-03 |
| 64 | GO:0019899: enzyme binding | 2.93E-03 |
| 65 | GO:0004721: phosphoprotein phosphatase activity | 3.09E-03 |
| 66 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 3.40E-03 |
| 67 | GO:0004033: aldo-keto reductase (NADP) activity | 3.40E-03 |
| 68 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 3.88E-03 |
| 69 | GO:0008135: translation factor activity, RNA binding | 3.88E-03 |
| 70 | GO:0005375: copper ion transmembrane transporter activity | 3.88E-03 |
| 71 | GO:0030145: manganese ion binding | 3.95E-03 |
| 72 | GO:0050897: cobalt ion binding | 3.95E-03 |
| 73 | GO:0016844: strictosidine synthase activity | 4.93E-03 |
| 74 | GO:0045309: protein phosphorylated amino acid binding | 4.93E-03 |
| 75 | GO:0019904: protein domain specific binding | 6.06E-03 |
| 76 | GO:0005315: inorganic phosphate transmembrane transporter activity | 7.28E-03 |
| 77 | GO:0031072: heat shock protein binding | 7.28E-03 |
| 78 | GO:0000155: phosphorelay sensor kinase activity | 7.28E-03 |
| 79 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 7.28E-03 |
| 80 | GO:0046872: metal ion binding | 7.34E-03 |
| 81 | GO:0005528: FK506 binding | 9.94E-03 |
| 82 | GO:0004176: ATP-dependent peptidase activity | 1.14E-02 |
| 83 | GO:0003727: single-stranded RNA binding | 1.37E-02 |
| 84 | GO:0008514: organic anion transmembrane transporter activity | 1.37E-02 |
| 85 | GO:0030170: pyridoxal phosphate binding | 1.49E-02 |
| 86 | GO:0008565: protein transporter activity | 1.61E-02 |
| 87 | GO:0010181: FMN binding | 1.70E-02 |
| 88 | GO:0016791: phosphatase activity | 2.15E-02 |
| 89 | GO:0003743: translation initiation factor activity | 2.17E-02 |
| 90 | GO:0042802: identical protein binding | 2.36E-02 |
| 91 | GO:0015250: water channel activity | 2.44E-02 |
| 92 | GO:0000287: magnesium ion binding | 2.82E-02 |
| 93 | GO:0003746: translation elongation factor activity | 3.49E-02 |
| 94 | GO:0050661: NADP binding | 3.83E-02 |
| 95 | GO:0004185: serine-type carboxypeptidase activity | 4.18E-02 |
| 96 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.41E-02 |
| 97 | GO:0043621: protein self-association | 4.41E-02 |
| 98 | GO:0005198: structural molecule activity | 4.54E-02 |
| 99 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.18E-43 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.99E-27 |
| 3 | GO:0009941: chloroplast envelope | 2.60E-18 |
| 4 | GO:0009570: chloroplast stroma | 1.07E-17 |
| 5 | GO:0009534: chloroplast thylakoid | 3.04E-12 |
| 6 | GO:0009579: thylakoid | 4.83E-11 |
| 7 | GO:0009706: chloroplast inner membrane | 2.01E-05 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 3.41E-05 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 4.81E-05 |
| 10 | GO:0042651: thylakoid membrane | 4.81E-05 |
| 11 | GO:0031977: thylakoid lumen | 6.14E-05 |
| 12 | GO:0009523: photosystem II | 1.46E-04 |
| 13 | GO:0009515: granal stacked thylakoid | 1.91E-04 |
| 14 | GO:0009782: photosystem I antenna complex | 1.91E-04 |
| 15 | GO:0010319: stromule | 2.30E-04 |
| 16 | GO:0010287: plastoglobule | 3.00E-04 |
| 17 | GO:0010007: magnesium chelatase complex | 6.99E-04 |
| 18 | GO:0033281: TAT protein transport complex | 6.99E-04 |
| 19 | GO:0048046: apoplast | 7.25E-04 |
| 20 | GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing) | 1.32E-03 |
| 21 | GO:0031969: chloroplast membrane | 1.45E-03 |
| 22 | GO:0019898: extrinsic component of membrane | 1.71E-03 |
| 23 | GO:0005777: peroxisome | 1.91E-03 |
| 24 | GO:0009707: chloroplast outer membrane | 3.42E-03 |
| 25 | GO:0009514: glyoxysome | 3.88E-03 |
| 26 | GO:0009539: photosystem II reaction center | 3.88E-03 |
| 27 | GO:0042644: chloroplast nucleoid | 4.40E-03 |
| 28 | GO:0005938: cell cortex | 7.28E-03 |
| 29 | GO:0030095: chloroplast photosystem II | 7.91E-03 |
| 30 | GO:0030076: light-harvesting complex | 8.57E-03 |
| 31 | GO:0015629: actin cytoskeleton | 1.29E-02 |
| 32 | GO:0009522: photosystem I | 1.70E-02 |
| 33 | GO:0005778: peroxisomal membrane | 2.25E-02 |
| 34 | GO:0009295: nucleoid | 2.25E-02 |
| 35 | GO:0009536: plastid | 2.46E-02 |
| 36 | GO:0016020: membrane | 4.49E-02 |