GO Enrichment Analysis of Co-expressed Genes with
AT2G03390
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016576: histone dephosphorylation | 0.00E+00 |
| 2 | GO:0018316: peptide cross-linking via L-cystine | 0.00E+00 |
| 3 | GO:0006907: pinocytosis | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 6 | GO:0048856: anatomical structure development | 0.00E+00 |
| 7 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 1.52E-06 |
| 8 | GO:0000741: karyogamy | 5.77E-05 |
| 9 | GO:0010019: chloroplast-nucleus signaling pathway | 8.05E-05 |
| 10 | GO:0009658: chloroplast organization | 1.43E-04 |
| 11 | GO:0046900: tetrahydrofolylpolyglutamate metabolic process | 1.77E-04 |
| 12 | GO:0034971: histone H3-R17 methylation | 1.77E-04 |
| 13 | GO:0042371: vitamin K biosynthetic process | 1.77E-04 |
| 14 | GO:0071454: cellular response to anoxia | 1.77E-04 |
| 15 | GO:0048438: floral whorl development | 1.77E-04 |
| 16 | GO:0034970: histone H3-R2 methylation | 1.77E-04 |
| 17 | GO:0034972: histone H3-R26 methylation | 1.77E-04 |
| 18 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 4.01E-04 |
| 19 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 4.01E-04 |
| 20 | GO:0035335: peptidyl-tyrosine dephosphorylation | 4.01E-04 |
| 21 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 4.01E-04 |
| 22 | GO:0080153: negative regulation of reductive pentose-phosphate cycle | 4.01E-04 |
| 23 | GO:0010024: phytochromobilin biosynthetic process | 4.01E-04 |
| 24 | GO:0009451: RNA modification | 4.82E-04 |
| 25 | GO:0006760: folic acid-containing compound metabolic process | 6.55E-04 |
| 26 | GO:0045739: positive regulation of DNA repair | 6.55E-04 |
| 27 | GO:0033014: tetrapyrrole biosynthetic process | 9.34E-04 |
| 28 | GO:1902476: chloride transmembrane transport | 9.34E-04 |
| 29 | GO:0046656: folic acid biosynthetic process | 1.24E-03 |
| 30 | GO:0071483: cellular response to blue light | 1.24E-03 |
| 31 | GO:0042274: ribosomal small subunit biogenesis | 1.24E-03 |
| 32 | GO:0031935: regulation of chromatin silencing | 1.24E-03 |
| 33 | GO:0010197: polar nucleus fusion | 1.35E-03 |
| 34 | GO:0016123: xanthophyll biosynthetic process | 1.57E-03 |
| 35 | GO:0010076: maintenance of floral meristem identity | 2.32E-03 |
| 36 | GO:0017148: negative regulation of translation | 2.32E-03 |
| 37 | GO:0046654: tetrahydrofolate biosynthetic process | 2.32E-03 |
| 38 | GO:0016126: sterol biosynthetic process | 2.38E-03 |
| 39 | GO:0006821: chloride transport | 2.74E-03 |
| 40 | GO:1900056: negative regulation of leaf senescence | 2.74E-03 |
| 41 | GO:0010196: nonphotochemical quenching | 2.74E-03 |
| 42 | GO:0080111: DNA demethylation | 2.74E-03 |
| 43 | GO:0009704: de-etiolation | 3.17E-03 |
| 44 | GO:0048564: photosystem I assembly | 3.17E-03 |
| 45 | GO:0042255: ribosome assembly | 3.17E-03 |
| 46 | GO:0006353: DNA-templated transcription, termination | 3.17E-03 |
| 47 | GO:0009910: negative regulation of flower development | 3.57E-03 |
| 48 | GO:0071482: cellular response to light stimulus | 3.63E-03 |
| 49 | GO:0022900: electron transport chain | 3.63E-03 |
| 50 | GO:0009821: alkaloid biosynthetic process | 4.10E-03 |
| 51 | GO:0006783: heme biosynthetic process | 4.10E-03 |
| 52 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.60E-03 |
| 53 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.60E-03 |
| 54 | GO:0009744: response to sucrose | 5.03E-03 |
| 55 | GO:0045036: protein targeting to chloroplast | 5.11E-03 |
| 56 | GO:0051555: flavonol biosynthetic process | 5.11E-03 |
| 57 | GO:0043085: positive regulation of catalytic activity | 5.65E-03 |
| 58 | GO:0006352: DNA-templated transcription, initiation | 5.65E-03 |
| 59 | GO:0010105: negative regulation of ethylene-activated signaling pathway | 6.20E-03 |
| 60 | GO:0045037: protein import into chloroplast stroma | 6.20E-03 |
| 61 | GO:0010582: floral meristem determinacy | 6.20E-03 |
| 62 | GO:0080167: response to karrikin | 6.49E-03 |
| 63 | GO:0009725: response to hormone | 6.78E-03 |
| 64 | GO:0009767: photosynthetic electron transport chain | 6.78E-03 |
| 65 | GO:0010207: photosystem II assembly | 7.37E-03 |
| 66 | GO:0009266: response to temperature stimulus | 7.37E-03 |
| 67 | GO:0034605: cellular response to heat | 7.37E-03 |
| 68 | GO:0006541: glutamine metabolic process | 7.37E-03 |
| 69 | GO:0019253: reductive pentose-phosphate cycle | 7.37E-03 |
| 70 | GO:0090351: seedling development | 7.98E-03 |
| 71 | GO:0006810: transport | 8.45E-03 |
| 72 | GO:0007010: cytoskeleton organization | 9.26E-03 |
| 73 | GO:0007017: microtubule-based process | 9.92E-03 |
| 74 | GO:0016226: iron-sulfur cluster assembly | 1.13E-02 |
| 75 | GO:0080092: regulation of pollen tube growth | 1.13E-02 |
| 76 | GO:0070417: cellular response to cold | 1.35E-02 |
| 77 | GO:0008033: tRNA processing | 1.43E-02 |
| 78 | GO:0009958: positive gravitropism | 1.50E-02 |
| 79 | GO:0007018: microtubule-based movement | 1.58E-02 |
| 80 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.75E-02 |
| 81 | GO:0032502: developmental process | 1.83E-02 |
| 82 | GO:0009793: embryo development ending in seed dormancy | 1.85E-02 |
| 83 | GO:0071805: potassium ion transmembrane transport | 2.09E-02 |
| 84 | GO:0000910: cytokinesis | 2.18E-02 |
| 85 | GO:0015995: chlorophyll biosynthetic process | 2.55E-02 |
| 86 | GO:0000160: phosphorelay signal transduction system | 2.84E-02 |
| 87 | GO:0006811: ion transport | 2.94E-02 |
| 88 | GO:0006839: mitochondrial transport | 3.56E-02 |
| 89 | GO:0006260: DNA replication | 4.45E-02 |
| 90 | GO:0000165: MAPK cascade | 4.45E-02 |
| 91 | GO:0009736: cytokinin-activated signaling pathway | 4.80E-02 |
| 92 | GO:0006813: potassium ion transport | 4.80E-02 |
| 93 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.92E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0030946: protein tyrosine phosphatase activity, metal-dependent | 0.00E+00 |
| 2 | GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | 0.00E+00 |
| 3 | GO:0047793: cycloeucalenol cycloisomerase activity | 0.00E+00 |
| 4 | GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity | 0.00E+00 |
| 5 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 6 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 7 | GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity | 0.00E+00 |
| 8 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 9 | GO:0008242: omega peptidase activity | 1.77E-04 |
| 10 | GO:0046906: tetrapyrrole binding | 1.77E-04 |
| 11 | GO:0004325: ferrochelatase activity | 1.77E-04 |
| 12 | GO:0004150: dihydroneopterin aldolase activity | 4.01E-04 |
| 13 | GO:0034722: gamma-glutamyl-peptidase activity | 4.01E-04 |
| 14 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 4.01E-04 |
| 15 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 4.01E-04 |
| 16 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 4.01E-04 |
| 17 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.01E-04 |
| 18 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 4.01E-04 |
| 19 | GO:0000900: translation repressor activity, nucleic acid binding | 6.55E-04 |
| 20 | GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity | 6.55E-04 |
| 21 | GO:0008469: histone-arginine N-methyltransferase activity | 6.55E-04 |
| 22 | GO:0032947: protein complex scaffold | 6.55E-04 |
| 23 | GO:0004848: ureidoglycolate hydrolase activity | 6.55E-04 |
| 24 | GO:0043023: ribosomal large subunit binding | 9.34E-04 |
| 25 | GO:0000254: C-4 methylsterol oxidase activity | 9.34E-04 |
| 26 | GO:0016851: magnesium chelatase activity | 9.34E-04 |
| 27 | GO:0005253: anion channel activity | 1.24E-03 |
| 28 | GO:0001053: plastid sigma factor activity | 1.24E-03 |
| 29 | GO:0016987: sigma factor activity | 1.24E-03 |
| 30 | GO:0005247: voltage-gated chloride channel activity | 1.94E-03 |
| 31 | GO:0004519: endonuclease activity | 2.55E-03 |
| 32 | GO:0019899: enzyme binding | 2.74E-03 |
| 33 | GO:0004525: ribonuclease III activity | 3.17E-03 |
| 34 | GO:0016844: strictosidine synthase activity | 4.60E-03 |
| 35 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 5.65E-03 |
| 36 | GO:0031072: heat shock protein binding | 6.78E-03 |
| 37 | GO:0003690: double-stranded DNA binding | 7.02E-03 |
| 38 | GO:0008131: primary amine oxidase activity | 7.37E-03 |
| 39 | GO:0003777: microtubule motor activity | 7.51E-03 |
| 40 | GO:0003887: DNA-directed DNA polymerase activity | 8.61E-03 |
| 41 | GO:0022857: transmembrane transporter activity | 9.09E-03 |
| 42 | GO:0051536: iron-sulfur cluster binding | 9.26E-03 |
| 43 | GO:0015079: potassium ion transmembrane transporter activity | 9.92E-03 |
| 44 | GO:0003723: RNA binding | 1.02E-02 |
| 45 | GO:0019843: rRNA binding | 1.21E-02 |
| 46 | GO:0003727: single-stranded RNA binding | 1.27E-02 |
| 47 | GO:0008080: N-acetyltransferase activity | 1.50E-02 |
| 48 | GO:0005506: iron ion binding | 1.52E-02 |
| 49 | GO:0004872: receptor activity | 1.66E-02 |
| 50 | GO:0008017: microtubule binding | 1.75E-02 |
| 51 | GO:0048038: quinone binding | 1.75E-02 |
| 52 | GO:0004518: nuclease activity | 1.83E-02 |
| 53 | GO:0008194: UDP-glycosyltransferase activity | 1.88E-02 |
| 54 | GO:0000156: phosphorelay response regulator activity | 1.91E-02 |
| 55 | GO:0008483: transaminase activity | 2.09E-02 |
| 56 | GO:0016491: oxidoreductase activity | 2.35E-02 |
| 57 | GO:0016788: hydrolase activity, acting on ester bonds | 2.65E-02 |
| 58 | GO:0050897: cobalt ion binding | 3.04E-02 |
| 59 | GO:0003746: translation elongation factor activity | 3.24E-02 |
| 60 | GO:0004185: serine-type carboxypeptidase activity | 3.88E-02 |
| 61 | GO:0042803: protein homodimerization activity | 4.03E-02 |
| 62 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.11E-02 |
| 63 | GO:0005198: structural molecule activity | 4.22E-02 |
| 64 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.15E-12 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.83E-05 |
| 3 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.09E-04 |
| 4 | GO:0030286: dynein complex | 1.24E-03 |
| 5 | GO:0055035: plastid thylakoid membrane | 1.57E-03 |
| 6 | GO:0034707: chloride channel complex | 1.94E-03 |
| 7 | GO:0009570: chloroplast stroma | 2.53E-03 |
| 8 | GO:0043231: intracellular membrane-bounded organelle | 2.61E-03 |
| 9 | GO:0000123: histone acetyltransferase complex | 2.74E-03 |
| 10 | GO:0046930: pore complex | 3.63E-03 |
| 11 | GO:0016324: apical plasma membrane | 5.11E-03 |
| 12 | GO:0005875: microtubule associated complex | 8.61E-03 |
| 13 | GO:0043234: protein complex | 8.61E-03 |
| 14 | GO:0009706: chloroplast inner membrane | 9.66E-03 |
| 15 | GO:0042651: thylakoid membrane | 9.92E-03 |
| 16 | GO:0015935: small ribosomal subunit | 1.06E-02 |
| 17 | GO:0005623: cell | 1.24E-02 |
| 18 | GO:0005871: kinesin complex | 1.35E-02 |
| 19 | GO:0009536: plastid | 2.12E-02 |
| 20 | GO:0005874: microtubule | 3.11E-02 |
| 21 | GO:0031969: chloroplast membrane | 3.22E-02 |
| 22 | GO:0005622: intracellular | 4.49E-02 |
| 23 | GO:0031966: mitochondrial membrane | 4.56E-02 |