GO Enrichment Analysis of Co-expressed Genes with
AT2G02500
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006429: leucyl-tRNA aminoacylation | 0.00E+00 |
| 2 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 3 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 4 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 5 | GO:0046838: phosphorylated carbohydrate dephosphorylation | 0.00E+00 |
| 6 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 7 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 8 | GO:0010027: thylakoid membrane organization | 1.59E-07 |
| 9 | GO:0009658: chloroplast organization | 3.22E-07 |
| 10 | GO:0032544: plastid translation | 1.74E-06 |
| 11 | GO:0006412: translation | 7.43E-06 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 9.17E-06 |
| 13 | GO:0015979: photosynthesis | 1.53E-05 |
| 14 | GO:0006418: tRNA aminoacylation for protein translation | 2.41E-05 |
| 15 | GO:0042254: ribosome biogenesis | 7.32E-05 |
| 16 | GO:0009657: plastid organization | 1.20E-04 |
| 17 | GO:0046167: glycerol-3-phosphate biosynthetic process | 1.40E-04 |
| 18 | GO:0043007: maintenance of rDNA | 1.40E-04 |
| 19 | GO:0010028: xanthophyll cycle | 1.40E-04 |
| 20 | GO:0006438: valyl-tRNA aminoacylation | 1.40E-04 |
| 21 | GO:0000476: maturation of 4.5S rRNA | 1.40E-04 |
| 22 | GO:0000967: rRNA 5'-end processing | 1.40E-04 |
| 23 | GO:0016122: xanthophyll metabolic process | 3.20E-04 |
| 24 | GO:0034470: ncRNA processing | 3.20E-04 |
| 25 | GO:0006650: glycerophospholipid metabolic process | 3.20E-04 |
| 26 | GO:0018026: peptidyl-lysine monomethylation | 3.20E-04 |
| 27 | GO:0048281: inflorescence morphogenesis | 5.26E-04 |
| 28 | GO:0046168: glycerol-3-phosphate catabolic process | 5.26E-04 |
| 29 | GO:0006518: peptide metabolic process | 5.26E-04 |
| 30 | GO:0061077: chaperone-mediated protein folding | 6.07E-04 |
| 31 | GO:0006072: glycerol-3-phosphate metabolic process | 7.53E-04 |
| 32 | GO:0010148: transpiration | 7.53E-04 |
| 33 | GO:0009793: embryo development ending in seed dormancy | 8.93E-04 |
| 34 | GO:0006808: regulation of nitrogen utilization | 9.98E-04 |
| 35 | GO:0019464: glycine decarboxylation via glycine cleavage system | 9.98E-04 |
| 36 | GO:0006109: regulation of carbohydrate metabolic process | 9.98E-04 |
| 37 | GO:0015994: chlorophyll metabolic process | 9.98E-04 |
| 38 | GO:0006546: glycine catabolic process | 9.98E-04 |
| 39 | GO:0010021: amylopectin biosynthetic process | 9.98E-04 |
| 40 | GO:0006461: protein complex assembly | 1.26E-03 |
| 41 | GO:0000304: response to singlet oxygen | 1.26E-03 |
| 42 | GO:0032543: mitochondrial translation | 1.26E-03 |
| 43 | GO:0009790: embryo development | 1.50E-03 |
| 44 | GO:0042549: photosystem II stabilization | 1.55E-03 |
| 45 | GO:0000470: maturation of LSU-rRNA | 1.55E-03 |
| 46 | GO:0042793: transcription from plastid promoter | 1.55E-03 |
| 47 | GO:0010190: cytochrome b6f complex assembly | 1.55E-03 |
| 48 | GO:0042026: protein refolding | 1.86E-03 |
| 49 | GO:0006458: 'de novo' protein folding | 1.86E-03 |
| 50 | GO:0010103: stomatal complex morphogenesis | 2.18E-03 |
| 51 | GO:0070370: cellular heat acclimation | 2.18E-03 |
| 52 | GO:0009817: defense response to fungus, incompatible interaction | 2.22E-03 |
| 53 | GO:0005978: glycogen biosynthetic process | 2.52E-03 |
| 54 | GO:0009735: response to cytokinin | 2.80E-03 |
| 55 | GO:0001558: regulation of cell growth | 2.88E-03 |
| 56 | GO:0010206: photosystem II repair | 3.26E-03 |
| 57 | GO:0006631: fatty acid metabolic process | 3.33E-03 |
| 58 | GO:0005982: starch metabolic process | 3.65E-03 |
| 59 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.65E-03 |
| 60 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.06E-03 |
| 61 | GO:0006415: translational termination | 4.48E-03 |
| 62 | GO:0019684: photosynthesis, light reaction | 4.48E-03 |
| 63 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.48E-03 |
| 64 | GO:0009073: aromatic amino acid family biosynthetic process | 4.48E-03 |
| 65 | GO:0043085: positive regulation of catalytic activity | 4.48E-03 |
| 66 | GO:0005983: starch catabolic process | 4.92E-03 |
| 67 | GO:0010020: chloroplast fission | 5.84E-03 |
| 68 | GO:0010207: photosystem II assembly | 5.84E-03 |
| 69 | GO:0009944: polarity specification of adaxial/abaxial axis | 7.32E-03 |
| 70 | GO:0051302: regulation of cell division | 7.84E-03 |
| 71 | GO:0016575: histone deacetylation | 7.84E-03 |
| 72 | GO:0031408: oxylipin biosynthetic process | 8.38E-03 |
| 73 | GO:0009686: gibberellin biosynthetic process | 9.48E-03 |
| 74 | GO:0001944: vasculature development | 9.48E-03 |
| 75 | GO:0009561: megagametogenesis | 1.01E-02 |
| 76 | GO:0055114: oxidation-reduction process | 1.05E-02 |
| 77 | GO:0006662: glycerol ether metabolic process | 1.18E-02 |
| 78 | GO:0019252: starch biosynthetic process | 1.31E-02 |
| 79 | GO:0008654: phospholipid biosynthetic process | 1.31E-02 |
| 80 | GO:1901657: glycosyl compound metabolic process | 1.51E-02 |
| 81 | GO:0030163: protein catabolic process | 1.51E-02 |
| 82 | GO:0016311: dephosphorylation | 2.08E-02 |
| 83 | GO:0009813: flavonoid biosynthetic process | 2.23E-02 |
| 84 | GO:0006499: N-terminal protein myristoylation | 2.31E-02 |
| 85 | GO:0034599: cellular response to oxidative stress | 2.63E-02 |
| 86 | GO:0030001: metal ion transport | 2.80E-02 |
| 87 | GO:0032259: methylation | 3.25E-02 |
| 88 | GO:0009965: leaf morphogenesis | 3.32E-02 |
| 89 | GO:0006979: response to oxidative stress | 3.52E-02 |
| 90 | GO:0009664: plant-type cell wall organization | 3.59E-02 |
| 91 | GO:0006364: rRNA processing | 3.78E-02 |
| 92 | GO:0006096: glycolytic process | 4.26E-02 |
| 93 | GO:0043086: negative regulation of catalytic activity | 4.26E-02 |
| 94 | GO:0009740: gibberellic acid mediated signaling pathway | 4.65E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity | 0.00E+00 |
| 4 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 5 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 6 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 7 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 8 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 9 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 10 | GO:0004823: leucine-tRNA ligase activity | 0.00E+00 |
| 11 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 12 | GO:0019843: rRNA binding | 4.20E-13 |
| 13 | GO:0005528: FK506 binding | 3.57E-11 |
| 14 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 5.88E-08 |
| 15 | GO:0003735: structural constituent of ribosome | 5.09E-07 |
| 16 | GO:0004812: aminoacyl-tRNA ligase activity | 4.90E-05 |
| 17 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.40E-04 |
| 18 | GO:0050308: sugar-phosphatase activity | 1.40E-04 |
| 19 | GO:0019203: carbohydrate phosphatase activity | 1.40E-04 |
| 20 | GO:0004832: valine-tRNA ligase activity | 1.40E-04 |
| 21 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 3.20E-04 |
| 22 | GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity | 3.20E-04 |
| 23 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.20E-04 |
| 24 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 5.26E-04 |
| 25 | GO:0043169: cation binding | 5.26E-04 |
| 26 | GO:0017150: tRNA dihydrouridine synthase activity | 5.26E-04 |
| 27 | GO:0002161: aminoacyl-tRNA editing activity | 5.26E-04 |
| 28 | GO:0005504: fatty acid binding | 5.26E-04 |
| 29 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 7.53E-04 |
| 30 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 7.53E-04 |
| 31 | GO:0016851: magnesium chelatase activity | 7.53E-04 |
| 32 | GO:0048487: beta-tubulin binding | 7.53E-04 |
| 33 | GO:0016149: translation release factor activity, codon specific | 7.53E-04 |
| 34 | GO:0043023: ribosomal large subunit binding | 7.53E-04 |
| 35 | GO:0051082: unfolded protein binding | 9.38E-04 |
| 36 | GO:0016279: protein-lysine N-methyltransferase activity | 9.98E-04 |
| 37 | GO:0019199: transmembrane receptor protein kinase activity | 9.98E-04 |
| 38 | GO:0045430: chalcone isomerase activity | 9.98E-04 |
| 39 | GO:0042277: peptide binding | 9.98E-04 |
| 40 | GO:0016491: oxidoreductase activity | 1.01E-03 |
| 41 | GO:2001070: starch binding | 1.55E-03 |
| 42 | GO:0004033: aldo-keto reductase (NADP) activity | 2.52E-03 |
| 43 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 2.88E-03 |
| 44 | GO:0000287: magnesium ion binding | 3.14E-03 |
| 45 | GO:0003747: translation release factor activity | 3.26E-03 |
| 46 | GO:0008138: protein tyrosine/serine/threonine phosphatase activity | 3.26E-03 |
| 47 | GO:0043621: protein self-association | 3.90E-03 |
| 48 | GO:0008047: enzyme activator activity | 4.06E-03 |
| 49 | GO:0044183: protein binding involved in protein folding | 4.48E-03 |
| 50 | GO:0047372: acylglycerol lipase activity | 4.48E-03 |
| 51 | GO:0031072: heat shock protein binding | 5.37E-03 |
| 52 | GO:0008266: poly(U) RNA binding | 5.84E-03 |
| 53 | GO:0004857: enzyme inhibitor activity | 7.32E-03 |
| 54 | GO:0004407: histone deacetylase activity | 7.32E-03 |
| 55 | GO:0004252: serine-type endopeptidase activity | 9.59E-03 |
| 56 | GO:0047134: protein-disulfide reductase activity | 1.06E-02 |
| 57 | GO:0004791: thioredoxin-disulfide reductase activity | 1.25E-02 |
| 58 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.51E-02 |
| 59 | GO:0008483: transaminase activity | 1.64E-02 |
| 60 | GO:0008168: methyltransferase activity | 1.78E-02 |
| 61 | GO:0102483: scopolin beta-glucosidase activity | 2.00E-02 |
| 62 | GO:0008236: serine-type peptidase activity | 2.08E-02 |
| 63 | GO:0004222: metalloendopeptidase activity | 2.31E-02 |
| 64 | GO:0003993: acid phosphatase activity | 2.63E-02 |
| 65 | GO:0008422: beta-glucosidase activity | 2.72E-02 |
| 66 | GO:0005198: structural molecule activity | 3.32E-02 |
| 67 | GO:0003924: GTPase activity | 3.39E-02 |
| 68 | GO:0051287: NAD binding | 3.50E-02 |
| 69 | GO:0015035: protein disulfide oxidoreductase activity | 4.95E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 3.17E-53 |
| 3 | GO:0009570: chloroplast stroma | 1.04E-27 |
| 4 | GO:0009941: chloroplast envelope | 5.17E-22 |
| 5 | GO:0009534: chloroplast thylakoid | 1.06E-20 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 9.84E-17 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 1.69E-16 |
| 8 | GO:0009579: thylakoid | 1.38E-13 |
| 9 | GO:0031977: thylakoid lumen | 1.81E-13 |
| 10 | GO:0005840: ribosome | 1.52E-09 |
| 11 | GO:0030095: chloroplast photosystem II | 1.62E-07 |
| 12 | GO:0009533: chloroplast stromal thylakoid | 7.34E-05 |
| 13 | GO:0009547: plastid ribosome | 1.40E-04 |
| 14 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.20E-04 |
| 15 | GO:0009508: plastid chromosome | 3.21E-04 |
| 16 | GO:0010007: magnesium chelatase complex | 5.26E-04 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 5.53E-04 |
| 18 | GO:0005960: glycine cleavage complex | 7.53E-04 |
| 19 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 7.53E-04 |
| 20 | GO:0019898: extrinsic component of membrane | 1.12E-03 |
| 21 | GO:0009295: nucleoid | 1.53E-03 |
| 22 | GO:0009840: chloroplastic endopeptidase Clp complex | 1.86E-03 |
| 23 | GO:0016272: prefoldin complex | 1.86E-03 |
| 24 | GO:0009501: amyloplast | 2.52E-03 |
| 25 | GO:0015934: large ribosomal subunit | 2.56E-03 |
| 26 | GO:0009536: plastid | 3.41E-03 |
| 27 | GO:0031969: chloroplast membrane | 4.23E-03 |
| 28 | GO:0000311: plastid large ribosomal subunit | 4.92E-03 |
| 29 | GO:0043234: protein complex | 6.81E-03 |
| 30 | GO:0009706: chloroplast inner membrane | 6.89E-03 |
| 31 | GO:0010287: plastoglobule | 8.18E-03 |
| 32 | GO:0009532: plastid stroma | 8.38E-03 |
| 33 | GO:0009523: photosystem II | 1.31E-02 |
| 34 | GO:0010319: stromule | 1.64E-02 |