co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G02010

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035264: multicellular organism growth	0.00E+00
2	GO:0009560: embryo sac egg cell differentiation	0.00E+00
3	GO:0071289: cellular response to nickel ion	0.00E+00
4	GO:0034263: positive regulation of autophagy in response to ER overload	0.00E+00
5	GO:0042353: fucose biosynthetic process	0.00E+00
6	GO:0007141: male meiosis I	0.00E+00
7	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
8	GO:0010046: response to mycotoxin	0.00E+00
9	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
10	GO:0010200: response to chitin	6.37E-11
11	GO:0009611: response to wounding	1.46E-06
12	GO:0006796: phosphate-containing compound metabolic process	7.64E-05
13	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.40E-04
14	GO:0006955: immune response	1.40E-04
15	GO:2000070: regulation of response to water deprivation	1.78E-04
16	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	2.11E-04
17	GO:0009609: response to symbiotic bacterium	2.11E-04
18	GO:0051180: vitamin transport	2.11E-04
19	GO:0006562: proline catabolic process	2.11E-04
20	GO:0030974: thiamine pyrophosphate transport	2.11E-04
21	GO:0050691: regulation of defense response to virus by host	2.11E-04
22	GO:0034620: cellular response to unfolded protein	2.11E-04
23	GO:0009873: ethylene-activated signaling pathway	2.36E-04
24	GO:0009737: response to abscisic acid	2.51E-04
25	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.70E-04
26	GO:0006970: response to osmotic stress	2.70E-04
27	GO:2000280: regulation of root development	3.21E-04
28	GO:0009816: defense response to bacterium, incompatible interaction	3.51E-04
29	GO:0006952: defense response	4.13E-04
30	GO:0010133: proline catabolic process to glutamate	4.71E-04
31	GO:0006611: protein export from nucleus	4.71E-04
32	GO:0031407: oxylipin metabolic process	4.71E-04
33	GO:0042754: negative regulation of circadian rhythm	4.71E-04
34	GO:0010289: homogalacturonan biosynthetic process	4.71E-04
35	GO:0010372: positive regulation of gibberellin biosynthetic process	4.71E-04
36	GO:2000030: regulation of response to red or far red light	4.71E-04
37	GO:0043255: regulation of carbohydrate biosynthetic process	4.71E-04
38	GO:0007130: synaptonemal complex assembly	4.71E-04
39	GO:0015893: drug transport	4.71E-04
40	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.99E-04
41	GO:0034605: cellular response to heat	6.38E-04
42	GO:0006081: cellular aldehyde metabolic process	7.67E-04
43	GO:0000055: ribosomal large subunit export from nucleus	7.67E-04
44	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.67E-04
45	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	7.67E-04
46	GO:0080168: abscisic acid transport	7.67E-04
47	GO:0051176: positive regulation of sulfur metabolic process	7.67E-04
48	GO:0009863: salicylic acid mediated signaling pathway	8.76E-04
49	GO:0009409: response to cold	1.00E-03
50	GO:0030100: regulation of endocytosis	1.09E-03
51	GO:0006537: glutamate biosynthetic process	1.09E-03
52	GO:0009399: nitrogen fixation	1.09E-03
53	GO:0033014: tetrapyrrole biosynthetic process	1.09E-03
54	GO:0015696: ammonium transport	1.09E-03
55	GO:0006986: response to unfolded protein	1.09E-03
56	GO:0046686: response to cadmium ion	1.36E-03
57	GO:0072488: ammonium transmembrane transport	1.45E-03
58	GO:0001709: cell fate determination	1.45E-03
59	GO:1902347: response to strigolactone	1.45E-03
60	GO:0009694: jasmonic acid metabolic process	1.45E-03
61	GO:0042335: cuticle development	1.58E-03
62	GO:0045489: pectin biosynthetic process	1.71E-03
63	GO:0007029: endoplasmic reticulum organization	1.85E-03
64	GO:0009435: NAD biosynthetic process	1.85E-03
65	GO:0006090: pyruvate metabolic process	1.85E-03
66	GO:0010117: photoprotection	1.85E-03
67	GO:0009624: response to nematode	1.93E-03
68	GO:0010256: endomembrane system organization	2.28E-03
69	GO:0048232: male gamete generation	2.28E-03
70	GO:0010337: regulation of salicylic acid metabolic process	2.28E-03
71	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.74E-03
72	GO:0010555: response to mannitol	2.74E-03
73	GO:0006468: protein phosphorylation	2.89E-03
74	GO:0001666: response to hypoxia	3.03E-03
75	GO:0009751: response to salicylic acid	3.20E-03
76	GO:0006401: RNA catabolic process	3.23E-03
77	GO:0030497: fatty acid elongation	3.23E-03
78	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	3.23E-03
79	GO:1902074: response to salt	3.23E-03
80	GO:0009408: response to heat	3.26E-03
81	GO:0006633: fatty acid biosynthetic process	3.43E-03
82	GO:0007155: cell adhesion	3.74E-03
83	GO:0006402: mRNA catabolic process	3.74E-03
84	GO:1900150: regulation of defense response to fungus	3.74E-03
85	GO:0009415: response to water	3.74E-03
86	GO:0007623: circadian rhythm	3.87E-03
87	GO:0010208: pollen wall assembly	4.29E-03
88	GO:0009699: phenylpropanoid biosynthetic process	4.29E-03
89	GO:0030968: endoplasmic reticulum unfolded protein response	4.29E-03
90	GO:0009834: plant-type secondary cell wall biogenesis	4.35E-03
91	GO:0009060: aerobic respiration	4.85E-03
92	GO:0010345: suberin biosynthetic process	4.85E-03
93	GO:0098656: anion transmembrane transport	4.85E-03
94	GO:0046685: response to arsenic-containing substance	4.85E-03
95	GO:0006783: heme biosynthetic process	4.85E-03
96	GO:0016051: carbohydrate biosynthetic process	4.99E-03
97	GO:0006779: porphyrin-containing compound biosynthetic process	5.44E-03
98	GO:0000387: spliceosomal snRNP assembly	5.44E-03
99	GO:0048829: root cap development	6.06E-03
100	GO:0006782: protoporphyrinogen IX biosynthetic process	6.06E-03
101	GO:0051026: chiasma assembly	6.06E-03
102	GO:0019538: protein metabolic process	6.06E-03
103	GO:0009414: response to water deprivation	6.38E-03
104	GO:0042742: defense response to bacterium	6.65E-03
105	GO:0010015: root morphogenesis	6.69E-03
106	GO:0000038: very long-chain fatty acid metabolic process	6.69E-03
107	GO:0009644: response to high light intensity	6.95E-03
108	GO:0071365: cellular response to auxin stimulus	7.36E-03
109	GO:0006820: anion transport	7.36E-03
110	GO:0055046: microgametogenesis	8.04E-03
111	GO:0006108: malate metabolic process	8.04E-03
112	GO:0009809: lignin biosynthetic process	8.67E-03
113	GO:0006364: rRNA processing	8.67E-03
114	GO:0010143: cutin biosynthetic process	8.75E-03
115	GO:0002237: response to molecule of bacterial origin	8.75E-03
116	GO:0009969: xyloglucan biosynthetic process	9.48E-03
117	GO:0070588: calcium ion transmembrane transport	9.48E-03
118	GO:0046777: protein autophosphorylation	9.66E-03
119	GO:0009833: plant-type primary cell wall biogenesis	1.02E-02
120	GO:0010025: wax biosynthetic process	1.02E-02
121	GO:0016310: phosphorylation	1.09E-02
122	GO:2000377: regulation of reactive oxygen species metabolic process	1.10E-02
123	GO:0045892: negative regulation of transcription, DNA-templated	1.14E-02
124	GO:0006457: protein folding	1.15E-02
125	GO:0051260: protein homooligomerization	1.26E-02
126	GO:0061077: chaperone-mediated protein folding	1.26E-02
127	GO:0009269: response to desiccation	1.26E-02
128	GO:0031408: oxylipin biosynthetic process	1.26E-02
129	GO:0031348: negative regulation of defense response	1.34E-02
130	GO:0071456: cellular response to hypoxia	1.34E-02
131	GO:0016226: iron-sulfur cluster assembly	1.34E-02
132	GO:0007131: reciprocal meiotic recombination	1.34E-02
133	GO:0030433: ubiquitin-dependent ERAD pathway	1.34E-02
134	GO:0009686: gibberellin biosynthetic process	1.43E-02
135	GO:0010091: trichome branching	1.52E-02
136	GO:0009306: protein secretion	1.52E-02
137	GO:0006397: mRNA processing	1.54E-02
138	GO:0016567: protein ubiquitination	1.65E-02
139	GO:0000271: polysaccharide biosynthetic process	1.70E-02
140	GO:0010501: RNA secondary structure unwinding	1.70E-02
141	GO:0048544: recognition of pollen	1.88E-02
142	GO:0009749: response to glucose	1.98E-02
143	GO:0008654: phospholipid biosynthetic process	1.98E-02
144	GO:0010193: response to ozone	2.08E-02
145	GO:0000302: response to reactive oxygen species	2.08E-02
146	GO:0010150: leaf senescence	2.14E-02
147	GO:0031047: gene silencing by RNA	2.18E-02
148	GO:0071555: cell wall organization	2.25E-02
149	GO:1901657: glycosyl compound metabolic process	2.28E-02
150	GO:0006914: autophagy	2.38E-02
151	GO:0006310: DNA recombination	2.38E-02
152	GO:0010286: heat acclimation	2.49E-02
153	GO:0007267: cell-cell signaling	2.49E-02
154	GO:0009615: response to virus	2.70E-02
155	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.81E-02
156	GO:0009627: systemic acquired resistance	2.92E-02
157	GO:0015995: chlorophyll biosynthetic process	3.04E-02
158	GO:0048573: photoperiodism, flowering	3.04E-02
159	GO:0008219: cell death	3.27E-02
160	GO:0030244: cellulose biosynthetic process	3.27E-02
161	GO:0010311: lateral root formation	3.38E-02
162	GO:0006499: N-terminal protein myristoylation	3.50E-02
163	GO:0006811: ion transport	3.50E-02
164	GO:0010119: regulation of stomatal movement	3.62E-02
165	GO:0009631: cold acclimation	3.62E-02
166	GO:0009723: response to ethylene	3.83E-02
167	GO:0009637: response to blue light	3.86E-02
168	GO:0045087: innate immune response	3.86E-02
169	GO:0050832: defense response to fungus	4.23E-02
170	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.24E-02
171	GO:0006839: mitochondrial transport	4.24E-02
172	GO:0006897: endocytosis	4.37E-02
173	GO:0006631: fatty acid metabolic process	4.37E-02
174	GO:0006351: transcription, DNA-templated	4.42E-02
175	GO:0042542: response to hydrogen peroxide	4.50E-02
176	GO:0051707: response to other organism	4.63E-02
177	GO:0009640: photomorphogenesis	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
2	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
3	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
4	GO:0070566: adenylyltransferase activity	0.00E+00
5	GO:0008987: quinolinate synthetase A activity	0.00E+00
6	GO:0033721: aldehyde dehydrogenase (NADP+) activity	0.00E+00
7	GO:0030621: U4 snRNA binding	0.00E+00
8	GO:0009922: fatty acid elongase activity	3.86E-07
9	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	4.33E-05
10	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	4.33E-05
11	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	4.33E-05
12	GO:0017070: U6 snRNA binding	5.18E-05
13	GO:0004427: inorganic diphosphatase activity	1.40E-04
14	GO:0090422: thiamine pyrophosphate transporter activity	2.11E-04
15	GO:0004657: proline dehydrogenase activity	2.11E-04
16	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	2.11E-04
17	GO:0030544: Hsp70 protein binding	2.11E-04
18	GO:0090440: abscisic acid transporter activity	2.11E-04
19	GO:0036002: pre-mRNA binding	4.71E-04
20	GO:0016629: 12-oxophytodienoate reductase activity	4.71E-04
21	GO:0004103: choline kinase activity	4.71E-04
22	GO:0008883: glutamyl-tRNA reductase activity	4.71E-04
23	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	7.67E-04
24	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	7.67E-04
25	GO:0070330: aromatase activity	7.67E-04
26	GO:0004383: guanylate cyclase activity	7.67E-04
27	GO:0004674: protein serine/threonine kinase activity	8.34E-04
28	GO:0016301: kinase activity	8.79E-04
29	GO:0004540: ribonuclease activity	1.05E-03
30	GO:0043023: ribosomal large subunit binding	1.09E-03
31	GO:0001653: peptide receptor activity	1.09E-03
32	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.09E-03
33	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.15E-03
34	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.45E-03
35	GO:0043015: gamma-tubulin binding	1.45E-03
36	GO:0004470: malic enzyme activity	1.45E-03
37	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.45E-03
38	GO:0002020: protease binding	1.85E-03
39	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.85E-03
40	GO:0004356: glutamate-ammonia ligase activity	1.85E-03
41	GO:0008381: mechanically-gated ion channel activity	1.85E-03
42	GO:0008948: oxaloacetate decarboxylase activity	1.85E-03
43	GO:0018685: alkane 1-monooxygenase activity	1.85E-03
44	GO:0016746: transferase activity, transferring acyl groups	2.01E-03
45	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.28E-03
46	GO:0008519: ammonium transmembrane transporter activity	2.28E-03
47	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.28E-03
48	GO:0016462: pyrophosphatase activity	2.28E-03
49	GO:0005524: ATP binding	2.48E-03
50	GO:0016758: transferase activity, transferring hexosyl groups	2.49E-03
51	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.74E-03
52	GO:0004143: diacylglycerol kinase activity	3.23E-03
53	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.23E-03
54	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.23E-03
55	GO:0016621: cinnamoyl-CoA reductase activity	3.23E-03
56	GO:0019899: enzyme binding	3.23E-03
57	GO:0008143: poly(A) binding	3.23E-03
58	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.74E-03
59	GO:0003951: NAD+ kinase activity	4.29E-03
60	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.44E-03
61	GO:0008047: enzyme activator activity	6.06E-03
62	GO:0043565: sequence-specific DNA binding	6.82E-03
63	GO:0004521: endoribonuclease activity	7.36E-03
64	GO:0005262: calcium channel activity	8.04E-03
65	GO:0000175: 3'-5'-exoribonuclease activity	8.04E-03
66	GO:0005315: inorganic phosphate transmembrane transporter activity	8.04E-03
67	GO:0031625: ubiquitin protein ligase binding	9.61E-03
68	GO:0004842: ubiquitin-protein transferase activity	1.17E-02
69	GO:0051087: chaperone binding	1.18E-02
70	GO:0035251: UDP-glucosyltransferase activity	1.26E-02
71	GO:0003729: mRNA binding	1.33E-02
72	GO:0016760: cellulose synthase (UDP-forming) activity	1.43E-02
73	GO:0005516: calmodulin binding	1.45E-02
74	GO:0008514: organic anion transmembrane transporter activity	1.52E-02
75	GO:0010181: FMN binding	1.88E-02
76	GO:0050662: coenzyme binding	1.88E-02
77	GO:0005509: calcium ion binding	2.00E-02
78	GO:0004518: nuclease activity	2.18E-02
79	GO:0016759: cellulose synthase activity	2.38E-02
80	GO:0016791: phosphatase activity	2.38E-02
81	GO:0005515: protein binding	2.64E-02
82	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.92E-02
83	GO:0004683: calmodulin-dependent protein kinase activity	3.04E-02
84	GO:0102483: scopolin beta-glucosidase activity	3.04E-02
85	GO:0004004: ATP-dependent RNA helicase activity	3.04E-02
86	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.15E-02
87	GO:0000287: magnesium ion binding	3.26E-02
88	GO:0005096: GTPase activator activity	3.38E-02
89	GO:0015238: drug transmembrane transporter activity	3.38E-02
90	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.62E-02
91	GO:0004672: protein kinase activity	3.95E-02
92	GO:0008422: beta-glucosidase activity	4.11E-02
93	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.22E-02
94	GO:0050661: NADP binding	4.24E-02
95	GO:0051539: 4 iron, 4 sulfur cluster binding	4.24E-02
96	GO:0030246: carbohydrate binding	4.32E-02
97	GO:0046872: metal ion binding	4.40E-02
98	GO:0043621: protein self-association	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	2.11E-04
2	GO:0010494: cytoplasmic stress granule	2.70E-04
3	GO:0005768: endosome	4.05E-04
4	GO:0071007: U2-type catalytic step 2 spliceosome	4.71E-04
5	GO:0005886: plasma membrane	4.78E-04
6	GO:0071006: U2-type catalytic step 1 spliceosome	1.09E-03
7	GO:0005802: trans-Golgi network	1.18E-03
8	GO:0000178: exosome (RNase complex)	1.85E-03
9	GO:0000974: Prp19 complex	2.28E-03
10	GO:0030173: integral component of Golgi membrane	2.74E-03
11	GO:0016363: nuclear matrix	2.74E-03
12	GO:0000932: P-body	3.03E-03
13	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.29E-03
14	GO:0016021: integral component of membrane	4.80E-03
15	GO:0009506: plasmodesma	5.33E-03
16	GO:0016604: nuclear body	5.44E-03
17	GO:0046658: anchored component of plasma membrane	5.53E-03
18	GO:0005794: Golgi apparatus	5.71E-03
19	GO:0048471: perinuclear region of cytoplasm	6.69E-03
20	GO:0019013: viral nucleocapsid	8.04E-03
21	GO:0005743: mitochondrial inner membrane	1.33E-02
22	GO:0000790: nuclear chromatin	1.61E-02
23	GO:0005770: late endosome	1.79E-02
24	GO:0032580: Golgi cisterna membrane	2.38E-02
25	GO:0005778: peroxisomal membrane	2.49E-02
26	GO:0005788: endoplasmic reticulum lumen	2.81E-02
27	GO:0019005: SCF ubiquitin ligase complex	3.27E-02
28	GO:0000139: Golgi membrane	3.52E-02
29	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.64E-02
30	GO:0031902: late endosome membrane	4.37E-02