co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000469: negative regulation of peroxidase activity	0.00E+00
2	GO:0030155: regulation of cell adhesion	0.00E+00
3	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
6	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
7	GO:0007172: signal complex assembly	0.00E+00
8	GO:0015717: triose phosphate transport	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0071474: cellular hyperosmotic response	0.00E+00
11	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
12	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
13	GO:0002184: cytoplasmic translational termination	0.00E+00
14	GO:0015979: photosynthesis	1.84E-13
15	GO:0009773: photosynthetic electron transport in photosystem I	7.96E-09
16	GO:0010027: thylakoid membrane organization	7.99E-08
17	GO:0009735: response to cytokinin	6.55E-07
18	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.83E-06
19	GO:0032544: plastid translation	1.04E-05
20	GO:0009658: chloroplast organization	1.07E-05
21	GO:0006000: fructose metabolic process	1.37E-05
22	GO:0010206: photosystem II repair	1.45E-05
23	GO:0010021: amylopectin biosynthetic process	5.52E-05
24	GO:0006412: translation	5.63E-05
25	GO:0015995: chlorophyll biosynthetic process	7.13E-05
26	GO:0006418: tRNA aminoacylation for protein translation	1.18E-04
27	GO:0009768: photosynthesis, light harvesting in photosystem I	1.18E-04
28	GO:0010190: cytochrome b6f complex assembly	1.27E-04
29	GO:0061077: chaperone-mediated protein folding	1.36E-04
30	GO:0009645: response to low light intensity stimulus	2.27E-04
31	GO:0006431: methionyl-tRNA aminoacylation	2.89E-04
32	GO:0000025: maltose catabolic process	2.89E-04
33	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.89E-04
34	GO:0005980: glycogen catabolic process	2.89E-04
35	GO:0080093: regulation of photorespiration	2.89E-04
36	GO:0031998: regulation of fatty acid beta-oxidation	2.89E-04
37	GO:0000023: maltose metabolic process	2.89E-04
38	GO:0009657: plastid organization	3.53E-04
39	GO:0006002: fructose 6-phosphate metabolic process	3.53E-04
40	GO:0042254: ribosome biogenesis	5.66E-04
41	GO:0016560: protein import into peroxisome matrix, docking	6.34E-04
42	GO:0005976: polysaccharide metabolic process	6.34E-04
43	GO:0018026: peptidyl-lysine monomethylation	6.34E-04
44	GO:0090342: regulation of cell aging	6.34E-04
45	GO:0097054: L-glutamate biosynthetic process	6.34E-04
46	GO:0031648: protein destabilization	6.34E-04
47	GO:0051262: protein tetramerization	6.34E-04
48	GO:0005983: starch catabolic process	7.74E-04
49	GO:0018298: protein-chromophore linkage	8.19E-04
50	GO:0006094: gluconeogenesis	8.76E-04
51	GO:0005986: sucrose biosynthetic process	8.76E-04
52	GO:0048281: inflorescence morphogenesis	1.03E-03
53	GO:0006518: peptide metabolic process	1.03E-03
54	GO:0010623: programmed cell death involved in cell development	1.03E-03
55	GO:0080055: low-affinity nitrate transport	1.03E-03
56	GO:0035436: triose phosphate transmembrane transport	1.03E-03
57	GO:0090153: regulation of sphingolipid biosynthetic process	1.03E-03
58	GO:0016050: vesicle organization	1.03E-03
59	GO:0006537: glutamate biosynthetic process	1.47E-03
60	GO:0010306: rhamnogalacturonan II biosynthetic process	1.47E-03
61	GO:0010148: transpiration	1.47E-03
62	GO:0010731: protein glutathionylation	1.47E-03
63	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.47E-03
64	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.47E-03
65	GO:1902358: sulfate transmembrane transport	1.47E-03
66	GO:0009644: response to high light intensity	1.67E-03
67	GO:0019464: glycine decarboxylation via glycine cleavage system	1.97E-03
68	GO:0009765: photosynthesis, light harvesting	1.97E-03
69	GO:0010600: regulation of auxin biosynthetic process	1.97E-03
70	GO:0006552: leucine catabolic process	1.97E-03
71	GO:0006546: glycine catabolic process	1.97E-03
72	GO:0010508: positive regulation of autophagy	1.97E-03
73	GO:0051205: protein insertion into membrane	1.97E-03
74	GO:0015713: phosphoglycerate transport	1.97E-03
75	GO:0006808: regulation of nitrogen utilization	1.97E-03
76	GO:0019676: ammonia assimilation cycle	1.97E-03
77	GO:0015976: carbon utilization	1.97E-03
78	GO:0016120: carotene biosynthetic process	2.52E-03
79	GO:0032543: mitochondrial translation	2.52E-03
80	GO:0045038: protein import into chloroplast thylakoid membrane	2.52E-03
81	GO:0006097: glyoxylate cycle	2.52E-03
82	GO:0006461: protein complex assembly	2.52E-03
83	GO:0048868: pollen tube development	2.67E-03
84	GO:0009409: response to cold	2.76E-03
85	GO:0009646: response to absence of light	2.87E-03
86	GO:0019252: starch biosynthetic process	3.08E-03
87	GO:0000470: maturation of LSU-rRNA	3.11E-03
88	GO:0042793: transcription from plastid promoter	3.11E-03
89	GO:0009643: photosynthetic acclimation	3.11E-03
90	GO:0009635: response to herbicide	3.11E-03
91	GO:0009955: adaxial/abaxial pattern specification	3.74E-03
92	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.74E-03
93	GO:0042026: protein refolding	3.74E-03
94	GO:0006458: 'de novo' protein folding	3.74E-03
95	GO:1901259: chloroplast rRNA processing	3.74E-03
96	GO:0070370: cellular heat acclimation	4.41E-03
97	GO:0008272: sulfate transport	4.41E-03
98	GO:0009769: photosynthesis, light harvesting in photosystem II	4.41E-03
99	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.41E-03
100	GO:0022904: respiratory electron transport chain	4.41E-03
101	GO:0030307: positive regulation of cell growth	4.41E-03
102	GO:0010103: stomatal complex morphogenesis	4.41E-03
103	GO:0010161: red light signaling pathway	4.41E-03
104	GO:0010928: regulation of auxin mediated signaling pathway	5.12E-03
105	GO:0005978: glycogen biosynthetic process	5.12E-03
106	GO:0009704: de-etiolation	5.12E-03
107	GO:0009790: embryo development	5.60E-03
108	GO:0001558: regulation of cell growth	5.87E-03
109	GO:0017004: cytochrome complex assembly	5.87E-03
110	GO:0048481: plant ovule development	6.21E-03
111	GO:0051865: protein autoubiquitination	6.65E-03
112	GO:0006783: heme biosynthetic process	6.65E-03
113	GO:0048527: lateral root development	7.19E-03
114	GO:0010205: photoinhibition	7.48E-03
115	GO:0042761: very long-chain fatty acid biosynthetic process	7.48E-03
116	GO:0005982: starch metabolic process	7.48E-03
117	GO:0006782: protoporphyrinogen IX biosynthetic process	8.33E-03
118	GO:0048829: root cap development	8.33E-03
119	GO:0031627: telomeric loop formation	8.33E-03
120	GO:0009073: aromatic amino acid family biosynthetic process	9.22E-03
121	GO:0006415: translational termination	9.22E-03
122	GO:0009750: response to fructose	9.22E-03
123	GO:0016485: protein processing	9.22E-03
124	GO:0006810: transport	9.90E-03
125	GO:0045037: protein import into chloroplast stroma	1.01E-02
126	GO:0010102: lateral root morphogenesis	1.11E-02
127	GO:0010628: positive regulation of gene expression	1.11E-02
128	GO:0006108: malate metabolic process	1.11E-02
129	GO:0019253: reductive pentose-phosphate cycle	1.21E-02
130	GO:0009266: response to temperature stimulus	1.21E-02
131	GO:0009934: regulation of meristem structural organization	1.21E-02
132	GO:0006302: double-strand break repair	1.21E-02
133	GO:0005985: sucrose metabolic process	1.31E-02
134	GO:0010025: wax biosynthetic process	1.41E-02
135	GO:0006636: unsaturated fatty acid biosynthetic process	1.41E-02
136	GO:0009944: polarity specification of adaxial/abaxial axis	1.52E-02
137	GO:0006289: nucleotide-excision repair	1.52E-02
138	GO:0009416: response to light stimulus	1.56E-02
139	GO:0007017: microtubule-based process	1.63E-02
140	GO:0051302: regulation of cell division	1.63E-02
141	GO:0019915: lipid storage	1.75E-02
142	GO:0051321: meiotic cell cycle	1.75E-02
143	GO:0010017: red or far-red light signaling pathway	1.86E-02
144	GO:0016226: iron-sulfur cluster assembly	1.86E-02
145	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.86E-02
146	GO:0035428: hexose transmembrane transport	1.86E-02
147	GO:0019748: secondary metabolic process	1.86E-02
148	GO:0030245: cellulose catabolic process	1.86E-02
149	GO:0009686: gibberellin biosynthetic process	1.98E-02
150	GO:0040007: growth	1.98E-02
151	GO:0001944: vasculature development	1.98E-02
152	GO:0006284: base-excision repair	2.10E-02
153	GO:0010089: xylem development	2.10E-02
154	GO:0016117: carotenoid biosynthetic process	2.23E-02
155	GO:0042335: cuticle development	2.35E-02
156	GO:0046323: glucose import	2.48E-02
157	GO:0071554: cell wall organization or biogenesis	2.88E-02
158	GO:0000302: response to reactive oxygen species	2.88E-02
159	GO:0030163: protein catabolic process	3.16E-02
160	GO:1901657: glycosyl compound metabolic process	3.16E-02
161	GO:0010252: auxin homeostasis	3.31E-02
162	GO:0009627: systemic acquired resistance	4.05E-02
163	GO:0016311: dephosphorylation	4.37E-02
164	GO:0009817: defense response to fungus, incompatible interaction	4.53E-02
165	GO:0009834: plant-type secondary cell wall biogenesis	4.85E-02
166	GO:0010218: response to far red light	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
3	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
8	GO:0048039: ubiquinone binding	0.00E+00
9	GO:0004823: leucine-tRNA ligase activity	0.00E+00
10	GO:0009899: ent-kaurene synthase activity	0.00E+00
11	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
12	GO:0019843: rRNA binding	2.03E-09
13	GO:0003735: structural constituent of ribosome	2.12E-06
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.83E-06
15	GO:0002161: aminoacyl-tRNA editing activity	1.37E-05
16	GO:0016851: magnesium chelatase activity	3.07E-05
17	GO:0031409: pigment binding	8.67E-05
18	GO:0005528: FK506 binding	1.02E-04
19	GO:0004812: aminoacyl-tRNA ligase activity	2.22E-04
20	GO:0008184: glycogen phosphorylase activity	2.89E-04
21	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.89E-04
22	GO:0004134: 4-alpha-glucanotransferase activity	2.89E-04
23	GO:0004645: phosphorylase activity	2.89E-04
24	GO:0004853: uroporphyrinogen decarboxylase activity	2.89E-04
25	GO:0045485: omega-6 fatty acid desaturase activity	2.89E-04
26	GO:0008158: hedgehog receptor activity	2.89E-04
27	GO:0004825: methionine-tRNA ligase activity	2.89E-04
28	GO:0016041: glutamate synthase (ferredoxin) activity	2.89E-04
29	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.89E-04
30	GO:0005227: calcium activated cation channel activity	2.89E-04
31	GO:0016168: chlorophyll binding	6.29E-04
32	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.34E-04
33	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.34E-04
34	GO:0008967: phosphoglycolate phosphatase activity	6.34E-04
35	GO:0010297: heteropolysaccharide binding	6.34E-04
36	GO:0033201: alpha-1,4-glucan synthase activity	6.34E-04
37	GO:0008236: serine-type peptidase activity	7.68E-04
38	GO:0004252: serine-type endopeptidase activity	9.68E-04
39	GO:0043169: cation binding	1.03E-03
40	GO:0004373: glycogen (starch) synthase activity	1.03E-03
41	GO:0017150: tRNA dihydrouridine synthase activity	1.03E-03
42	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.03E-03
43	GO:0071917: triose-phosphate transmembrane transporter activity	1.03E-03
44	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.03E-03
45	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.47E-03
46	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.47E-03
47	GO:0016149: translation release factor activity, codon specific	1.47E-03
48	GO:0043023: ribosomal large subunit binding	1.47E-03
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.84E-03
50	GO:0019199: transmembrane receptor protein kinase activity	1.97E-03
51	GO:0009011: starch synthase activity	1.97E-03
52	GO:0042277: peptide binding	1.97E-03
53	GO:0015120: phosphoglycerate transmembrane transporter activity	1.97E-03
54	GO:0016279: protein-lysine N-methyltransferase activity	1.97E-03
55	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.97E-03
56	GO:0051538: 3 iron, 4 sulfur cluster binding	2.52E-03
57	GO:0008725: DNA-3-methyladenine glycosylase activity	2.52E-03
58	GO:0004130: cytochrome-c peroxidase activity	3.11E-03
59	GO:0016615: malate dehydrogenase activity	3.11E-03
60	GO:2001070: starch binding	3.11E-03
61	GO:0030060: L-malate dehydrogenase activity	3.74E-03
62	GO:0005261: cation channel activity	3.74E-03
63	GO:0004033: aldo-keto reductase (NADP) activity	5.12E-03
64	GO:0005337: nucleoside transmembrane transporter activity	5.12E-03
65	GO:0008271: secondary active sulfate transmembrane transporter activity	5.87E-03
66	GO:0003747: translation release factor activity	6.65E-03
67	GO:0009055: electron carrier activity	7.30E-03
68	GO:0003691: double-stranded telomeric DNA binding	9.22E-03
69	GO:0044183: protein binding involved in protein folding	9.22E-03
70	GO:0047372: acylglycerol lipase activity	9.22E-03
71	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.01E-02
72	GO:0000049: tRNA binding	1.01E-02
73	GO:0015116: sulfate transmembrane transporter activity	1.01E-02
74	GO:0043621: protein self-association	1.10E-02
75	GO:0004565: beta-galactosidase activity	1.11E-02
76	GO:0004022: alcohol dehydrogenase (NAD) activity	1.11E-02
77	GO:0004089: carbonate dehydratase activity	1.11E-02
78	GO:0031072: heat shock protein binding	1.11E-02
79	GO:0000287: magnesium ion binding	1.18E-02
80	GO:0051536: iron-sulfur cluster binding	1.52E-02
81	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.68E-02
82	GO:0004176: ATP-dependent peptidase activity	1.75E-02
83	GO:0033612: receptor serine/threonine kinase binding	1.75E-02
84	GO:0003964: RNA-directed DNA polymerase activity	1.75E-02
85	GO:0008408: 3'-5' exonuclease activity	1.75E-02
86	GO:0051082: unfolded protein binding	1.96E-02
87	GO:0030570: pectate lyase activity	1.98E-02
88	GO:0008810: cellulase activity	1.98E-02
89	GO:0022891: substrate-specific transmembrane transporter activity	1.98E-02
90	GO:0003756: protein disulfide isomerase activity	2.10E-02
91	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.36E-02
92	GO:0001085: RNA polymerase II transcription factor binding	2.48E-02
93	GO:0003924: GTPase activity	2.60E-02
94	GO:0005355: glucose transmembrane transporter activity	2.61E-02
95	GO:0048038: quinone binding	2.88E-02
96	GO:0005525: GTP binding	3.27E-02
97	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.45E-02
98	GO:0005200: structural constituent of cytoskeleton	3.45E-02
99	GO:0016413: O-acetyltransferase activity	3.60E-02
100	GO:0102483: scopolin beta-glucosidase activity	4.21E-02
101	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.53E-02
102	GO:0004222: metalloendopeptidase activity	4.85E-02
103	GO:0003723: RNA binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0043233: organelle lumen	0.00E+00
3	GO:0042579: microbody	0.00E+00
4	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
5	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
6	GO:0009507: chloroplast	2.25E-49
7	GO:0009534: chloroplast thylakoid	2.42E-36
8	GO:0009570: chloroplast stroma	1.03E-33
9	GO:0009941: chloroplast envelope	1.81E-30
10	GO:0009535: chloroplast thylakoid membrane	8.77E-30
11	GO:0009579: thylakoid	9.35E-18
12	GO:0009543: chloroplast thylakoid lumen	8.13E-11
13	GO:0031977: thylakoid lumen	2.64E-08
14	GO:0010287: plastoglobule	3.58E-08
15	GO:0005840: ribosome	5.94E-08
16	GO:0009706: chloroplast inner membrane	6.57E-06
17	GO:0009538: photosystem I reaction center	7.22E-06
18	GO:0010007: magnesium chelatase complex	1.37E-05
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.45E-05
20	GO:0009295: nucleoid	4.16E-05
21	GO:0009508: plastid chromosome	5.03E-05
22	GO:0030095: chloroplast photosystem II	6.11E-05
23	GO:0030076: light-harvesting complex	7.31E-05
24	GO:0016020: membrane	7.89E-05
25	GO:0009533: chloroplast stromal thylakoid	2.27E-04
26	GO:0009501: amyloplast	2.87E-04
27	GO:0009782: photosystem I antenna complex	2.89E-04
28	GO:0000791: euchromatin	2.89E-04
29	GO:0009522: photosystem I	3.02E-04
30	GO:0009523: photosystem II	3.32E-04
31	GO:0030870: Mre11 complex	6.34E-04
32	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.34E-04
33	GO:0005782: peroxisomal matrix	1.03E-03
34	GO:0009509: chromoplast	1.03E-03
35	GO:0005960: glycine cleavage complex	1.47E-03
36	GO:0009654: photosystem II oxygen evolving complex	1.49E-03
37	GO:0042651: thylakoid membrane	1.49E-03
38	GO:0015935: small ribosomal subunit	1.64E-03
39	GO:0055035: plastid thylakoid membrane	2.52E-03
40	GO:0000795: synaptonemal complex	2.52E-03
41	GO:0019898: extrinsic component of membrane	3.08E-03
42	GO:0031305: integral component of mitochondrial inner membrane	5.12E-03
43	GO:0000783: nuclear telomere cap complex	5.87E-03
44	GO:0042644: chloroplast nucleoid	6.65E-03
45	GO:0045298: tubulin complex	6.65E-03
46	GO:0005763: mitochondrial small ribosomal subunit	6.65E-03
47	GO:0005740: mitochondrial envelope	8.33E-03
48	GO:0048046: apoplast	9.09E-03
49	GO:0009536: plastid	2.10E-02
50	GO:0005623: cell	2.53E-02
51	GO:0000785: chromatin	3.02E-02
52	GO:0010319: stromule	3.45E-02
53	GO:0005667: transcription factor complex	4.05E-02