co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G01630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0009451: RNA modification	1.66E-07
4	GO:0072387: flavin adenine dinucleotide metabolic process	3.12E-05
5	GO:0010617: circadian regulation of calcium ion oscillation	7.88E-05
6	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	7.88E-05
7	GO:0099402: plant organ development	7.88E-05
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	7.88E-05
9	GO:0010343: singlet oxygen-mediated programmed cell death	7.88E-05
10	GO:1901529: positive regulation of anion channel activity	7.88E-05
11	GO:1902448: positive regulation of shade avoidance	1.37E-04
12	GO:1901672: positive regulation of systemic acquired resistance	1.37E-04
13	GO:0033014: tetrapyrrole biosynthetic process	2.04E-04
14	GO:1901332: negative regulation of lateral root development	2.04E-04
15	GO:0019048: modulation by virus of host morphology or physiology	2.04E-04
16	GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA	2.76E-04
17	GO:1902347: response to strigolactone	2.76E-04
18	GO:0010117: photoprotection	3.53E-04
19	GO:0046283: anthocyanin-containing compound metabolic process	3.53E-04
20	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	3.53E-04
21	GO:0060918: auxin transport	4.34E-04
22	GO:0042793: transcription from plastid promoter	4.34E-04
23	GO:1901371: regulation of leaf morphogenesis	4.34E-04
24	GO:0010310: regulation of hydrogen peroxide metabolic process	5.20E-04
25	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.20E-04
26	GO:0051510: regulation of unidimensional cell growth	6.07E-04
27	GO:0006402: mRNA catabolic process	6.99E-04
28	GO:0022900: electron transport chain	7.94E-04
29	GO:0006783: heme biosynthetic process	8.92E-04
30	GO:1900426: positive regulation of defense response to bacterium	9.92E-04
31	GO:0009638: phototropism	9.92E-04
32	GO:0006779: porphyrin-containing compound biosynthetic process	9.92E-04
33	GO:0016441: posttranscriptional gene silencing	1.10E-03
34	GO:0010072: primary shoot apical meristem specification	1.20E-03
35	GO:0010075: regulation of meristem growth	1.43E-03
36	GO:0009767: photosynthetic electron transport chain	1.43E-03
37	GO:0009785: blue light signaling pathway	1.43E-03
38	GO:2000377: regulation of reactive oxygen species metabolic process	1.92E-03
39	GO:0080092: regulation of pollen tube growth	2.32E-03
40	GO:0010051: xylem and phloem pattern formation	2.90E-03
41	GO:0010087: phloem or xylem histogenesis	2.90E-03
42	GO:0010118: stomatal movement	2.90E-03
43	GO:0042752: regulation of circadian rhythm	3.20E-03
44	GO:0009646: response to absence of light	3.20E-03
45	GO:0009791: post-embryonic development	3.36E-03
46	GO:0046777: protein autophosphorylation	3.42E-03
47	GO:0016126: sterol biosynthetic process	4.52E-03
48	GO:0005975: carbohydrate metabolic process	4.81E-03
49	GO:0006397: mRNA processing	4.90E-03
50	GO:0018298: protein-chromophore linkage	5.42E-03
51	GO:0010218: response to far red light	5.79E-03
52	GO:0009637: response to blue light	6.38E-03
53	GO:0006897: endocytosis	7.19E-03
54	GO:0010114: response to red light	7.60E-03
55	GO:0009640: photomorphogenesis	7.60E-03
56	GO:0009644: response to high light intensity	8.03E-03
57	GO:0009965: leaf morphogenesis	8.24E-03
58	GO:0006260: DNA replication	8.68E-03
59	GO:0007623: circadian rhythm	1.77E-02
60	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.91E-02
61	GO:0009860: pollen tube growth	2.54E-02
62	GO:0044550: secondary metabolite biosynthetic process	2.98E-02
63	GO:0006629: lipid metabolic process	3.71E-02
64	GO:0009793: embryo development ending in seed dormancy	3.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050072: m7G(5')pppN diphosphatase activity	0.00E+00
2	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
3	GO:0004519: endonuclease activity	3.07E-06
4	GO:0004325: ferrochelatase activity	3.12E-05
5	GO:0015929: hexosaminidase activity	7.88E-05
6	GO:0004563: beta-N-acetylhexosaminidase activity	7.88E-05
7	GO:0004848: ureidoglycolate hydrolase activity	1.37E-04
8	GO:0009882: blue light photoreceptor activity	2.04E-04
9	GO:0000254: C-4 methylsterol oxidase activity	2.04E-04
10	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	2.76E-04
11	GO:0008374: O-acyltransferase activity	3.53E-04
12	GO:0003723: RNA binding	6.23E-04
13	GO:0003729: mRNA binding	8.37E-04
14	GO:0071949: FAD binding	8.92E-04
15	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.20E-03
16	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.65E-03
17	GO:0003887: DNA-directed DNA polymerase activity	1.79E-03
18	GO:0035251: UDP-glucosyltransferase activity	2.19E-03
19	GO:0048038: quinone binding	3.51E-03
20	GO:0004518: nuclease activity	3.68E-03
21	GO:0042803: protein homodimerization activity	4.00E-03
22	GO:0005096: GTPase activator activity	5.60E-03
23	GO:0030145: manganese ion binding	5.99E-03
24	GO:0004712: protein serine/threonine/tyrosine kinase activity	6.77E-03
25	GO:0051537: 2 iron, 2 sulfur cluster binding	8.03E-03
26	GO:0035091: phosphatidylinositol binding	8.03E-03
27	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.43E-02
28	GO:0005506: iron ion binding	1.66E-02
29	GO:0008194: UDP-glycosyltransferase activity	1.91E-02
30	GO:0042802: identical protein binding	2.09E-02
31	GO:0016491: oxidoreductase activity	2.23E-02
32	GO:0000287: magnesium ion binding	2.38E-02
33	GO:0004497: monooxygenase activity	2.81E-02
34	GO:0061630: ubiquitin protein ligase activity	2.91E-02
35	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.37E-02
36	GO:0046872: metal ion binding	3.67E-02
37	GO:0009055: electron carrier activity	3.90E-02

Rank	GO Term	Adjusted P value
1	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.48E-05
2	GO:0016605: PML body	1.37E-04
3	GO:0055035: plastid thylakoid membrane	3.53E-04
4	GO:0030140: trans-Golgi network transport vesicle	4.34E-04
5	GO:0043231: intracellular membrane-bounded organelle	6.53E-04
6	GO:0009507: chloroplast	8.60E-04
7	GO:0016604: nuclear body	9.92E-04
8	GO:0016324: apical plasma membrane	1.10E-03
9	GO:0009508: plastid chromosome	1.43E-03
10	GO:0009535: chloroplast thylakoid membrane	1.54E-03
11	GO:0009295: nucleoid	4.17E-03
12	GO:0000932: P-body	4.52E-03
13	GO:0005773: vacuole	2.35E-02
14	GO:0031969: chloroplast membrane	2.81E-02