co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G80600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017012: protein-phytochromobilin linkage	0.00E+00
2	GO:0036172: thiamine salvage	0.00E+00
3	GO:0035674: tricarboxylic acid transmembrane transport	0.00E+00
4	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
5	GO:0015822: ornithine transport	0.00E+00
6	GO:0010202: response to low fluence red light stimulus	0.00E+00
7	GO:0046294: formaldehyde catabolic process	0.00E+00
8	GO:0009649: entrainment of circadian clock	1.18E-05
9	GO:0000066: mitochondrial ornithine transport	1.18E-04
10	GO:0006835: dicarboxylic acid transport	1.18E-04
11	GO:1902265: abscisic acid homeostasis	1.18E-04
12	GO:0006007: glucose catabolic process	1.18E-04
13	GO:0046686: response to cadmium ion	2.07E-04
14	GO:0006839: mitochondrial transport	2.59E-04
15	GO:0016560: protein import into peroxisome matrix, docking	2.73E-04
16	GO:0010617: circadian regulation of calcium ion oscillation	2.73E-04
17	GO:0006432: phenylalanyl-tRNA aminoacylation	2.73E-04
18	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.73E-04
19	GO:0010343: singlet oxygen-mediated programmed cell death	2.73E-04
20	GO:0009585: red, far-red light phototransduction	4.50E-04
21	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	4.52E-04
22	GO:0071492: cellular response to UV-A	4.52E-04
23	GO:0030835: negative regulation of actin filament depolymerization	4.52E-04
24	GO:0006760: folic acid-containing compound metabolic process	4.52E-04
25	GO:0010476: gibberellin mediated signaling pathway	4.52E-04
26	GO:0010325: raffinose family oligosaccharide biosynthetic process	4.52E-04
27	GO:0031022: nuclear migration along microfilament	4.52E-04
28	GO:0046034: ATP metabolic process	4.52E-04
29	GO:0006012: galactose metabolic process	5.76E-04
30	GO:0006228: UTP biosynthetic process	6.47E-04
31	GO:0010148: transpiration	6.47E-04
32	GO:0009963: positive regulation of flavonoid biosynthetic process	6.47E-04
33	GO:0009647: skotomorphogenesis	6.47E-04
34	GO:0010255: glucose mediated signaling pathway	6.47E-04
35	GO:0009584: detection of visible light	6.47E-04
36	GO:0006241: CTP biosynthetic process	6.47E-04
37	GO:0009399: nitrogen fixation	6.47E-04
38	GO:0006165: nucleoside diphosphate phosphorylation	6.47E-04
39	GO:0015986: ATP synthesis coupled proton transport	8.40E-04
40	GO:0006749: glutathione metabolic process	8.60E-04
41	GO:0044205: 'de novo' UMP biosynthetic process	8.60E-04
42	GO:0009902: chloroplast relocation	8.60E-04
43	GO:0034613: cellular protein localization	8.60E-04
44	GO:0009165: nucleotide biosynthetic process	8.60E-04
45	GO:0006542: glutamine biosynthetic process	8.60E-04
46	GO:0009687: abscisic acid metabolic process	8.60E-04
47	GO:0071486: cellular response to high light intensity	8.60E-04
48	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	8.60E-04
49	GO:0015689: molybdate ion transport	8.60E-04
50	GO:0009765: photosynthesis, light harvesting	8.60E-04
51	GO:0006183: GTP biosynthetic process	8.60E-04
52	GO:0006221: pyrimidine nucleotide biosynthetic process	8.60E-04
53	GO:0006625: protein targeting to peroxisome	8.60E-04
54	GO:0000304: response to singlet oxygen	1.08E-03
55	GO:0046283: anthocyanin-containing compound metabolic process	1.08E-03
56	GO:0009229: thiamine diphosphate biosynthetic process	1.08E-03
57	GO:0009228: thiamine biosynthetic process	1.33E-03
58	GO:0009117: nucleotide metabolic process	1.33E-03
59	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.33E-03
60	GO:0070814: hydrogen sulfide biosynthetic process	1.33E-03
61	GO:0010029: regulation of seed germination	1.44E-03
62	GO:0009903: chloroplast avoidance movement	1.59E-03
63	GO:0048444: floral organ morphogenesis	1.59E-03
64	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.59E-03
65	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.87E-03
66	GO:0010374: stomatal complex development	1.87E-03
67	GO:0010161: red light signaling pathway	1.87E-03
68	GO:0051693: actin filament capping	1.87E-03
69	GO:0000028: ribosomal small subunit assembly	2.16E-03
70	GO:0009231: riboflavin biosynthetic process	2.16E-03
71	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.16E-03
72	GO:0010100: negative regulation of photomorphogenesis	2.46E-03
73	GO:0009056: catabolic process	2.78E-03
74	GO:0098656: anion transmembrane transport	2.78E-03
75	GO:0009640: photomorphogenesis	2.86E-03
76	GO:0006810: transport	3.08E-03
77	GO:0009638: phototropism	3.12E-03
78	GO:0009098: leucine biosynthetic process	3.12E-03
79	GO:0000103: sulfate assimilation	3.46E-03
80	GO:0045036: protein targeting to chloroplast	3.46E-03
81	GO:0009641: shade avoidance	3.46E-03
82	GO:0009970: cellular response to sulfate starvation	3.46E-03
83	GO:0006325: chromatin organization	3.46E-03
84	GO:0072593: reactive oxygen species metabolic process	3.82E-03
85	GO:0018119: peptidyl-cysteine S-nitrosylation	3.82E-03
86	GO:0010224: response to UV-B	3.98E-03
87	GO:0006096: glycolytic process	4.54E-03
88	GO:0030048: actin filament-based movement	4.57E-03
89	GO:0006108: malate metabolic process	4.57E-03
90	GO:2000028: regulation of photoperiodism, flowering	4.57E-03
91	GO:0050826: response to freezing	4.57E-03
92	GO:0006094: gluconeogenesis	4.57E-03
93	GO:0032259: methylation	4.86E-03
94	GO:0009266: response to temperature stimulus	4.97E-03
95	GO:0006281: DNA repair	5.14E-03
96	GO:0007031: peroxisome organization	5.37E-03
97	GO:0034976: response to endoplasmic reticulum stress	5.79E-03
98	GO:0051017: actin filament bundle assembly	6.22E-03
99	GO:0009116: nucleoside metabolic process	6.22E-03
100	GO:0006874: cellular calcium ion homeostasis	6.66E-03
101	GO:0016226: iron-sulfur cluster assembly	7.57E-03
102	GO:0009693: ethylene biosynthetic process	8.05E-03
103	GO:0010118: stomatal movement	9.53E-03
104	GO:0015991: ATP hydrolysis coupled proton transport	9.53E-03
105	GO:0006520: cellular amino acid metabolic process	1.00E-02
106	GO:0009409: response to cold	1.04E-02
107	GO:0006508: proteolysis	1.12E-02
108	GO:0019761: glucosinolate biosynthetic process	1.22E-02
109	GO:0009630: gravitropism	1.22E-02
110	GO:0010090: trichome morphogenesis	1.28E-02
111	GO:1901657: glycosyl compound metabolic process	1.28E-02
112	GO:0016126: sterol biosynthetic process	1.51E-02
113	GO:0006974: cellular response to DNA damage stimulus	1.63E-02
114	GO:0042128: nitrate assimilation	1.63E-02
115	GO:0048573: photoperiodism, flowering	1.70E-02
116	GO:0018298: protein-chromophore linkage	1.82E-02
117	GO:0009407: toxin catabolic process	1.96E-02
118	GO:0010218: response to far red light	1.96E-02
119	GO:0010119: regulation of stomatal movement	2.02E-02
120	GO:0010043: response to zinc ion	2.02E-02
121	GO:0009867: jasmonic acid mediated signaling pathway	2.16E-02
122	GO:0009637: response to blue light	2.16E-02
123	GO:0009853: photorespiration	2.16E-02
124	GO:0045454: cell redox homeostasis	2.18E-02
125	GO:0006099: tricarboxylic acid cycle	2.23E-02
126	GO:0009926: auxin polar transport	2.59E-02
127	GO:0009408: response to heat	2.68E-02
128	GO:0055114: oxidation-reduction process	2.70E-02
129	GO:0009636: response to toxic substance	2.81E-02
130	GO:0009965: leaf morphogenesis	2.81E-02
131	GO:0008152: metabolic process	2.96E-02
132	GO:0031347: regulation of defense response	2.96E-02
133	GO:0051603: proteolysis involved in cellular protein catabolic process	3.28E-02
134	GO:0016569: covalent chromatin modification	3.94E-02
135	GO:0051726: regulation of cell cycle	4.28E-02
136	GO:0005975: carbohydrate metabolic process	4.35E-02
137	GO:0009058: biosynthetic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0004746: riboflavin synthase activity	0.00E+00
2	GO:0031517: red light photoreceptor activity	0.00E+00
3	GO:0004151: dihydroorotase activity	0.00E+00
4	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
5	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
6	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
7	GO:0015142: tricarboxylic acid transmembrane transporter activity	0.00E+00
8	GO:0050486: intramolecular transferase activity, transferring hydroxy groups	0.00E+00
9	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
10	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.34E-05
11	GO:0004034: aldose 1-epimerase activity	7.29E-05
12	GO:1990841: promoter-specific chromatin binding	1.18E-04
13	GO:0031516: far-red light photoreceptor activity	1.18E-04
14	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.18E-04
15	GO:0046480: galactolipid galactosyltransferase activity	1.18E-04
16	GO:0080079: cellobiose glucosidase activity	1.18E-04
17	GO:0010331: gibberellin binding	2.73E-04
18	GO:0009883: red or far-red light photoreceptor activity	2.73E-04
19	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.73E-04
20	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	2.73E-04
21	GO:0000064: L-ornithine transmembrane transporter activity	2.73E-04
22	GO:0004826: phenylalanine-tRNA ligase activity	2.73E-04
23	GO:0003861: 3-isopropylmalate dehydratase activity	4.52E-04
24	GO:0008020: G-protein coupled photoreceptor activity	4.52E-04
25	GO:0004781: sulfate adenylyltransferase (ATP) activity	4.52E-04
26	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.52E-04
27	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.52E-04
28	GO:0005310: dicarboxylic acid transmembrane transporter activity	4.52E-04
29	GO:0035529: NADH pyrophosphatase activity	6.47E-04
30	GO:0016656: monodehydroascorbate reductase (NADH) activity	6.47E-04
31	GO:0004550: nucleoside diphosphate kinase activity	6.47E-04
32	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	6.47E-04
33	GO:0017077: oxidative phosphorylation uncoupler activity	6.47E-04
34	GO:0004749: ribose phosphate diphosphokinase activity	6.47E-04
35	GO:0000254: C-4 methylsterol oxidase activity	6.47E-04
36	GO:0008080: N-acetyltransferase activity	7.83E-04
37	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	8.60E-04
38	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	8.60E-04
39	GO:0015098: molybdate ion transmembrane transporter activity	8.60E-04
40	GO:0004356: glutamate-ammonia ligase activity	1.08E-03
41	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.33E-03
42	GO:0030060: L-malate dehydrogenase activity	1.59E-03
43	GO:0050897: cobalt ion binding	2.04E-03
44	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.16E-03
45	GO:0008168: methyltransferase activity	2.28E-03
46	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.78E-03
47	GO:0004185: serine-type carboxypeptidase activity	2.86E-03
48	GO:0051537: 2 iron, 2 sulfur cluster binding	3.09E-03
49	GO:0004673: protein histidine kinase activity	3.46E-03
50	GO:0008047: enzyme activator activity	3.46E-03
51	GO:0005507: copper ion binding	3.84E-03
52	GO:0000049: tRNA binding	4.19E-03
53	GO:0008378: galactosyltransferase activity	4.19E-03
54	GO:0005315: inorganic phosphate transmembrane transporter activity	4.57E-03
55	GO:0004089: carbonate dehydratase activity	4.57E-03
56	GO:0000155: phosphorelay sensor kinase activity	4.57E-03
57	GO:0008266: poly(U) RNA binding	4.97E-03
58	GO:0005217: intracellular ligand-gated ion channel activity	5.37E-03
59	GO:0004970: ionotropic glutamate receptor activity	5.37E-03
60	GO:0004190: aspartic-type endopeptidase activity	5.37E-03
61	GO:0004176: ATP-dependent peptidase activity	7.11E-03
62	GO:0003756: protein disulfide isomerase activity	8.53E-03
63	GO:0008514: organic anion transmembrane transporter activity	8.53E-03
64	GO:0046872: metal ion binding	8.69E-03
65	GO:0005102: receptor binding	9.02E-03
66	GO:0016853: isomerase activity	1.06E-02
67	GO:0048038: quinone binding	1.16E-02
68	GO:0042802: identical protein binding	1.20E-02
69	GO:0051015: actin filament binding	1.28E-02
70	GO:0008237: metallopeptidase activity	1.39E-02
71	GO:0008483: transaminase activity	1.39E-02
72	GO:0016168: chlorophyll binding	1.57E-02
73	GO:0008375: acetylglucosaminyltransferase activity	1.63E-02
74	GO:0008236: serine-type peptidase activity	1.76E-02
75	GO:0004222: metalloendopeptidase activity	1.96E-02
76	GO:0030145: manganese ion binding	2.02E-02
77	GO:0008422: beta-glucosidase activity	2.30E-02
78	GO:0005509: calcium ion binding	2.35E-02
79	GO:0051539: 4 iron, 4 sulfur cluster binding	2.37E-02
80	GO:0050661: NADP binding	2.37E-02
81	GO:0004364: glutathione transferase activity	2.51E-02
82	GO:0003824: catalytic activity	2.92E-02
83	GO:0051287: NAD binding	2.96E-02
84	GO:0008234: cysteine-type peptidase activity	3.44E-02
85	GO:0016491: oxidoreductase activity	3.66E-02
86	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.68E-02
87	GO:0022857: transmembrane transporter activity	3.94E-02
88	GO:0015035: protein disulfide oxidoreductase activity	4.19E-02
89	GO:0008026: ATP-dependent helicase activity	4.28E-02
90	GO:0004386: helicase activity	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.18E-05
2	GO:0009536: plastid	1.66E-05
3	GO:0009507: chloroplast	2.22E-05
4	GO:0005829: cytosol	1.04E-04
5	GO:1990429: peroxisomal importomer complex	1.18E-04
6	GO:0000152: nuclear ubiquitin ligase complex	1.18E-04
7	GO:0005743: mitochondrial inner membrane	1.32E-04
8	GO:0016604: nuclear body	1.37E-04
9	GO:0005753: mitochondrial proton-transporting ATP synthase complex	3.23E-04
10	GO:0033180: proton-transporting V-type ATPase, V1 domain	6.47E-04
11	GO:0009941: chloroplast envelope	7.74E-04
12	GO:0030660: Golgi-associated vesicle membrane	8.60E-04
13	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	8.60E-04
14	GO:0005778: peroxisomal membrane	1.22E-03
15	GO:0031359: integral component of chloroplast outer membrane	1.87E-03
16	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.16E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.78E-03
18	GO:0005763: mitochondrial small ribosomal subunit	2.78E-03
19	GO:0005765: lysosomal membrane	3.82E-03
20	GO:0005747: mitochondrial respiratory chain complex I	4.68E-03
21	GO:0016607: nuclear speck	4.68E-03
22	GO:0005764: lysosome	4.97E-03
23	GO:0005758: mitochondrial intermembrane space	6.22E-03
24	GO:0042651: thylakoid membrane	6.66E-03
25	GO:0045271: respiratory chain complex I	6.66E-03
26	GO:0009523: photosystem II	1.11E-02
27	GO:0005777: peroxisome	1.27E-02
28	GO:0048046: apoplast	1.49E-02
29	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.61E-02
30	GO:0005739: mitochondrion	1.77E-02
31	GO:0009707: chloroplast outer membrane	1.82E-02
32	GO:0009535: chloroplast thylakoid membrane	2.20E-02
33	GO:0009506: plasmodesma	2.26E-02
34	GO:0005773: vacuole	2.83E-02
35	GO:0005737: cytoplasm	2.92E-02
36	GO:0031966: mitochondrial membrane	3.04E-02
37	GO:0010008: endosome membrane	3.68E-02
38	GO:0009570: chloroplast stroma	4.01E-02
39	GO:0009706: chloroplast inner membrane	4.11E-02
40	GO:0005774: vacuolar membrane	4.16E-02
41	GO:0009543: chloroplast thylakoid lumen	4.82E-02
42	GO:0005623: cell	4.91E-02
43	GO:0005730: nucleolus	4.96E-02