co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G79930

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048867: stem cell fate determination	0.00E+00
2	GO:0043462: regulation of ATPase activity	0.00E+00
3	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
4	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
5	GO:0009423: chorismate biosynthetic process	1.00E-05
6	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.00E-05
7	GO:0009911: positive regulation of flower development	1.73E-05
8	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	4.88E-05
9	GO:0010930: negative regulation of auxin mediated signaling pathway	4.88E-05
10	GO:0009303: rRNA transcription	4.88E-05
11	GO:0006007: glucose catabolic process	4.88E-05
12	GO:0003400: regulation of COPII vesicle coating	4.88E-05
13	GO:0009073: aromatic amino acid family biosynthetic process	5.27E-05
14	GO:0000266: mitochondrial fission	6.18E-05
15	GO:0016192: vesicle-mediated transport	8.04E-05
16	GO:0051262: protein tetramerization	1.20E-04
17	GO:1902066: regulation of cell wall pectin metabolic process	1.20E-04
18	GO:0010372: positive regulation of gibberellin biosynthetic process	1.20E-04
19	GO:0019632: shikimate metabolic process	1.20E-04
20	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.20E-04
21	GO:0009408: response to heat	1.47E-04
22	GO:0009306: protein secretion	1.96E-04
23	GO:0006065: UDP-glucuronate biosynthetic process	2.06E-04
24	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	2.06E-04
25	GO:0052546: cell wall pectin metabolic process	2.06E-04
26	GO:1901672: positive regulation of systemic acquired resistance	2.06E-04
27	GO:0048586: regulation of long-day photoperiodism, flowering	2.06E-04
28	GO:0032922: circadian regulation of gene expression	2.06E-04
29	GO:0016036: cellular response to phosphate starvation	2.91E-04
30	GO:0051639: actin filament network formation	3.01E-04
31	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	3.01E-04
32	GO:0010104: regulation of ethylene-activated signaling pathway	3.01E-04
33	GO:0051131: chaperone-mediated protein complex assembly	3.01E-04
34	GO:0051764: actin crosslink formation	4.04E-04
35	GO:0033356: UDP-L-arabinose metabolic process	4.04E-04
36	GO:0006405: RNA export from nucleus	5.13E-04
37	GO:0016926: protein desumoylation	5.13E-04
38	GO:0048573: photoperiodism, flowering	5.26E-04
39	GO:0006457: protein folding	5.63E-04
40	GO:0033365: protein localization to organelle	6.29E-04
41	GO:0015977: carbon fixation	7.50E-04
42	GO:0006099: tricarboxylic acid cycle	7.60E-04
43	GO:0006744: ubiquinone biosynthetic process	8.75E-04
44	GO:0000338: protein deneddylation	8.75E-04
45	GO:0071669: plant-type cell wall organization or biogenesis	8.75E-04
46	GO:0006886: intracellular protein transport	9.45E-04
47	GO:0000028: ribosomal small subunit assembly	1.01E-03
48	GO:0050821: protein stabilization	1.01E-03
49	GO:0006875: cellular metal ion homeostasis	1.01E-03
50	GO:0006402: mRNA catabolic process	1.01E-03
51	GO:0017004: cytochrome complex assembly	1.14E-03
52	GO:0015996: chlorophyll catabolic process	1.14E-03
53	GO:0010100: negative regulation of photomorphogenesis	1.14E-03
54	GO:0009846: pollen germination	1.15E-03
55	GO:0007338: single fertilization	1.28E-03
56	GO:0009909: regulation of flower development	1.36E-03
57	GO:0008202: steroid metabolic process	1.43E-03
58	GO:0090332: stomatal closure	1.43E-03
59	GO:0006896: Golgi to vacuole transport	1.59E-03
60	GO:0009553: embryo sac development	1.68E-03
61	GO:0006913: nucleocytoplasmic transport	1.75E-03
62	GO:0015706: nitrate transport	1.91E-03
63	GO:0010152: pollen maturation	1.91E-03
64	GO:0030036: actin cytoskeleton organization	2.08E-03
65	GO:0034605: cellular response to heat	2.26E-03
66	GO:0002237: response to molecule of bacterial origin	2.26E-03
67	GO:0010167: response to nitrate	2.44E-03
68	GO:0010187: negative regulation of seed germination	2.81E-03
69	GO:0051017: actin filament bundle assembly	2.81E-03
70	GO:0006406: mRNA export from nucleus	2.81E-03
71	GO:0010073: meristem maintenance	3.01E-03
72	GO:0006418: tRNA aminoacylation for protein translation	3.01E-03
73	GO:0006874: cellular calcium ion homeostasis	3.01E-03
74	GO:0061077: chaperone-mediated protein folding	3.20E-03
75	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.41E-03
76	GO:0009561: megagametogenesis	3.82E-03
77	GO:0006817: phosphate ion transport	3.82E-03
78	GO:0051028: mRNA transport	4.04E-03
79	GO:0010501: RNA secondary structure unwinding	4.26E-03
80	GO:0010118: stomatal movement	4.26E-03
81	GO:0006606: protein import into nucleus	4.26E-03
82	GO:0009741: response to brassinosteroid	4.48E-03
83	GO:0048366: leaf development	5.35E-03
84	GO:0031047: gene silencing by RNA	5.42E-03
85	GO:0009567: double fertilization forming a zygote and endosperm	5.91E-03
86	GO:0010286: heat acclimation	6.16E-03
87	GO:0016579: protein deubiquitination	6.42E-03
88	GO:0009615: response to virus	6.67E-03
89	GO:0009651: response to salt stress	6.86E-03
90	GO:0009816: defense response to bacterium, incompatible interaction	6.94E-03
91	GO:0042128: nitrate assimilation	7.20E-03
92	GO:0006974: cellular response to DNA damage stimulus	7.20E-03
93	GO:0006869: lipid transport	7.39E-03
94	GO:0006888: ER to Golgi vesicle-mediated transport	7.48E-03
95	GO:0030244: cellulose biosynthetic process	8.03E-03
96	GO:0009832: plant-type cell wall biogenesis	8.31E-03
97	GO:0009631: cold acclimation	8.88E-03
98	GO:0046686: response to cadmium ion	1.03E-02
99	GO:0009640: photomorphogenesis	1.13E-02
100	GO:0006364: rRNA processing	1.40E-02
101	GO:0009585: red, far-red light phototransduction	1.40E-02
102	GO:0010224: response to UV-B	1.43E-02
103	GO:0009555: pollen development	1.48E-02
104	GO:0006096: glycolytic process	1.57E-02
105	GO:0009626: plant-type hypersensitive response	1.65E-02
106	GO:0009620: response to fungus	1.68E-02
107	GO:0042545: cell wall modification	1.76E-02
108	GO:0000398: mRNA splicing, via spliceosome	1.99E-02
109	GO:0009790: embryo development	2.35E-02
110	GO:0045490: pectin catabolic process	2.65E-02
111	GO:0010228: vegetative to reproductive phase transition of meristem	2.73E-02
112	GO:0010468: regulation of gene expression	3.00E-02
113	GO:0009617: response to bacterium	3.00E-02
114	GO:0006970: response to osmotic stress	3.81E-02
115	GO:0009860: pollen tube growth	3.81E-02
116	GO:0009723: response to ethylene	4.01E-02
117	GO:0009409: response to cold	4.05E-02
118	GO:0046777: protein autophosphorylation	4.41E-02
119	GO:0015979: photosynthesis	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0004164: diphthine synthase activity	0.00E+00
2	GO:0004764: shikimate 3-dehydrogenase (NADP+) activity	0.00E+00
3	GO:0004107: chorismate synthase activity	0.00E+00
4	GO:0034511: U3 snoRNA binding	0.00E+00
5	GO:0003855: 3-dehydroquinate dehydratase activity	0.00E+00
6	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	4.88E-05
7	GO:0019784: NEDD8-specific protease activity	4.88E-05
8	GO:0005090: Sar guanyl-nucleotide exchange factor activity	4.88E-05
9	GO:0005198: structural molecule activity	6.92E-05
10	GO:0031072: heat shock protein binding	7.18E-05
11	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	1.20E-04
12	GO:0032934: sterol binding	1.20E-04
13	GO:0052691: UDP-arabinopyranose mutase activity	1.20E-04
14	GO:0051082: unfolded protein binding	1.51E-04
15	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.06E-04
16	GO:0019829: cation-transporting ATPase activity	2.06E-04
17	GO:0008964: phosphoenolpyruvate carboxylase activity	2.06E-04
18	GO:0030276: clathrin binding	2.50E-04
19	GO:0005524: ATP binding	3.88E-04
20	GO:0003729: mRNA binding	3.93E-04
21	GO:0000062: fatty-acyl-CoA binding	4.04E-04
22	GO:0016866: intramolecular transferase activity	4.04E-04
23	GO:0016929: SUMO-specific protease activity	5.13E-04
24	GO:0051020: GTPase binding	7.50E-04
25	GO:0004012: phospholipid-translocating ATPase activity	7.50E-04
26	GO:0030515: snoRNA binding	8.75E-04
27	GO:0017056: structural constituent of nuclear pore	1.01E-03
28	GO:0008142: oxysterol binding	1.14E-03
29	GO:0015112: nitrate transmembrane transporter activity	1.43E-03
30	GO:0005487: nucleocytoplasmic transporter activity	1.43E-03
31	GO:0001054: RNA polymerase I activity	1.75E-03
32	GO:0005543: phospholipid binding	1.75E-03
33	GO:0008026: ATP-dependent helicase activity	1.83E-03
34	GO:0005388: calcium-transporting ATPase activity	2.08E-03
35	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.08E-03
36	GO:0003725: double-stranded RNA binding	2.08E-03
37	GO:0004022: alcohol dehydrogenase (NAD) activity	2.08E-03
38	GO:0004175: endopeptidase activity	2.26E-03
39	GO:0000166: nucleotide binding	2.41E-03
40	GO:0005515: protein binding	2.57E-03
41	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	3.20E-03
42	GO:0016760: cellulose synthase (UDP-forming) activity	3.61E-03
43	GO:0004812: aminoacyl-tRNA ligase activity	4.04E-03
44	GO:0010181: FMN binding	4.71E-03
45	GO:0004843: thiol-dependent ubiquitin-specific protease activity	5.18E-03
46	GO:0004518: nuclease activity	5.42E-03
47	GO:0051015: actin filament binding	5.66E-03
48	GO:0004004: ATP-dependent RNA helicase activity	7.48E-03
49	GO:0005096: GTPase activator activity	8.31E-03
50	GO:0030145: manganese ion binding	8.88E-03
51	GO:0003697: single-stranded DNA binding	9.47E-03
52	GO:0050661: NADP binding	1.04E-02
53	GO:0008289: lipid binding	1.16E-02
54	GO:0016887: ATPase activity	1.29E-02
55	GO:0051287: NAD binding	1.30E-02
56	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.40E-02
57	GO:0003690: double-stranded DNA binding	1.43E-02
58	GO:0045330: aspartyl esterase activity	1.50E-02
59	GO:0008234: cysteine-type peptidase activity	1.50E-02
60	GO:0030599: pectinesterase activity	1.72E-02
61	GO:0016746: transferase activity, transferring acyl groups	1.83E-02
62	GO:0004386: helicase activity	1.91E-02
63	GO:0019843: rRNA binding	2.10E-02
64	GO:0008565: protein transporter activity	2.39E-02
65	GO:0003723: RNA binding	2.44E-02
66	GO:0046910: pectinesterase inhibitor activity	2.52E-02
67	GO:0008017: microtubule binding	2.73E-02
68	GO:0042802: identical protein binding	3.14E-02
69	GO:0008168: methyltransferase activity	3.52E-02
70	GO:0000287: magnesium ion binding	3.56E-02
71	GO:0004674: protein serine/threonine kinase activity	4.37E-02
72	GO:0004672: protein kinase activity	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	3.47E-13
2	GO:0005618: cell wall	1.54E-06
3	GO:0030117: membrane coat	2.64E-06
4	GO:0030663: COPI-coated vesicle membrane	2.64E-06
5	GO:0009506: plasmodesma	3.66E-06
6	GO:0030126: COPI vesicle coat	4.47E-06
7	GO:0000138: Golgi trans cisterna	4.88E-05
8	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	4.88E-05
9	GO:0045252: oxoglutarate dehydrogenase complex	4.88E-05
10	GO:0016442: RISC complex	4.88E-05
11	GO:0032040: small-subunit processome	6.18E-05
12	GO:0005730: nucleolus	7.97E-05
13	GO:0044613: nuclear pore central transport channel	1.20E-04
14	GO:0030130: clathrin coat of trans-Golgi network vesicle	2.06E-04
15	GO:0030132: clathrin coat of coated pit	2.06E-04
16	GO:0032432: actin filament bundle	3.01E-04
17	GO:0005746: mitochondrial respiratory chain	5.13E-04
18	GO:0030131: clathrin adaptor complex	1.01E-03
19	GO:0034399: nuclear periphery	1.01E-03
20	GO:0031982: vesicle	1.01E-03
21	GO:0005737: cytoplasm	1.07E-03
22	GO:0010494: cytoplasmic stress granule	1.28E-03
23	GO:0005736: DNA-directed RNA polymerase I complex	1.28E-03
24	GO:0008180: COP9 signalosome	1.28E-03
25	GO:0005635: nuclear envelope	1.31E-03
26	GO:0030665: clathrin-coated vesicle membrane	1.43E-03
27	GO:0005740: mitochondrial envelope	1.59E-03
28	GO:0000139: Golgi membrane	1.73E-03
29	GO:0005884: actin filament	1.75E-03
30	GO:0048471: perinuclear region of cytoplasm	1.75E-03
31	GO:0005886: plasma membrane	1.97E-03
32	GO:0005795: Golgi stack	2.44E-03
33	GO:0030176: integral component of endoplasmic reticulum membrane	2.44E-03
34	GO:0043234: protein complex	2.62E-03
35	GO:0005741: mitochondrial outer membrane	3.20E-03
36	GO:0005794: Golgi apparatus	3.33E-03
37	GO:0030136: clathrin-coated vesicle	4.04E-03
38	GO:0031965: nuclear membrane	4.94E-03
39	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.99E-03
40	GO:0071944: cell periphery	5.66E-03
41	GO:0000932: P-body	6.67E-03
42	GO:0005789: endoplasmic reticulum membrane	1.01E-02
43	GO:0031902: late endosome membrane	1.07E-02
44	GO:0005681: spliceosomal complex	1.57E-02
45	GO:0005783: endoplasmic reticulum	2.07E-02
46	GO:0009524: phragmoplast	2.18E-02
47	GO:0005874: microtubule	4.11E-02