Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G79460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0090706: specification of plant organ position0.00E+00
5GO:0000025: maltose catabolic process0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0090279: regulation of calcium ion import0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
11GO:0080127: fruit septum development0.00E+00
12GO:0015717: triose phosphate transport0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0015727: lactate transport0.00E+00
15GO:0007172: signal complex assembly0.00E+00
16GO:0071474: cellular hyperosmotic response0.00E+00
17GO:0018023: peptidyl-lysine trimethylation0.00E+00
18GO:0015979: photosynthesis1.09E-10
19GO:0010027: thylakoid membrane organization6.30E-08
20GO:0032544: plastid translation1.07E-06
21GO:0015995: chlorophyll biosynthetic process2.53E-06
22GO:0009773: photosynthetic electron transport in photosystem I5.24E-06
23GO:0042549: photosystem II stabilization8.86E-06
24GO:0030388: fructose 1,6-bisphosphate metabolic process1.30E-05
25GO:0018026: peptidyl-lysine monomethylation1.30E-05
26GO:0009658: chloroplast organization2.78E-05
27GO:0009735: response to cytokinin3.77E-05
28GO:0006000: fructose metabolic process4.36E-05
29GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.29E-05
30GO:0009409: response to cold1.43E-04
31GO:0010021: amylopectin biosynthetic process1.60E-04
32GO:0005983: starch catabolic process1.68E-04
33GO:0006094: gluconeogenesis2.02E-04
34GO:0009266: response to temperature stimulus2.40E-04
35GO:0010190: cytochrome b6f complex assembly3.43E-04
36GO:0006412: translation4.48E-04
37GO:0061077: chaperone-mediated protein folding4.88E-04
38GO:0031998: regulation of fatty acid beta-oxidation5.46E-04
39GO:0010028: xanthophyll cycle5.46E-04
40GO:0010450: inflorescence meristem growth5.46E-04
41GO:0000023: maltose metabolic process5.46E-04
42GO:0006431: methionyl-tRNA aminoacylation5.46E-04
43GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.46E-04
44GO:0043489: RNA stabilization5.46E-04
45GO:0005980: glycogen catabolic process5.46E-04
46GO:0043953: protein transport by the Tat complex5.46E-04
47GO:0065002: intracellular protein transmembrane transport5.46E-04
48GO:0080093: regulation of photorespiration5.46E-04
49GO:0043007: maintenance of rDNA5.46E-04
50GO:0010017: red or far-red light signaling pathway5.49E-04
51GO:0042254: ribosome biogenesis7.73E-04
52GO:0006002: fructose 6-phosphate metabolic process8.88E-04
53GO:0010206: photosystem II repair1.06E-03
54GO:0016122: xanthophyll metabolic process1.17E-03
55GO:0006521: regulation of cellular amino acid metabolic process1.17E-03
56GO:0051262: protein tetramerization1.17E-03
57GO:0005976: polysaccharide metabolic process1.17E-03
58GO:0090342: regulation of cell aging1.17E-03
59GO:0031648: protein destabilization1.17E-03
60GO:0005982: starch metabolic process1.25E-03
61GO:0006782: protoporphyrinogen IX biosynthetic process1.46E-03
62GO:0045165: cell fate commitment1.93E-03
63GO:0048281: inflorescence morphogenesis1.93E-03
64GO:0006518: peptide metabolic process1.93E-03
65GO:0009405: pathogenesis1.93E-03
66GO:0010623: programmed cell death involved in cell development1.93E-03
67GO:0080055: low-affinity nitrate transport1.93E-03
68GO:0035436: triose phosphate transmembrane transport1.93E-03
69GO:0016050: vesicle organization1.93E-03
70GO:0005986: sucrose biosynthetic process2.20E-03
71GO:0010102: lateral root morphogenesis2.20E-03
72GO:0010020: chloroplast fission2.48E-03
73GO:1902358: sulfate transmembrane transport2.80E-03
74GO:0010306: rhamnogalacturonan II biosynthetic process2.80E-03
75GO:0010731: protein glutathionylation2.80E-03
76GO:1901332: negative regulation of lateral root development2.80E-03
77GO:0010148: transpiration2.80E-03
78GO:0009631: cold acclimation3.25E-03
79GO:0009944: polarity specification of adaxial/abaxial axis3.45E-03
80GO:0006289: nucleotide-excision repair3.45E-03
81GO:0015976: carbon utilization3.76E-03
82GO:0010023: proanthocyanidin biosynthetic process3.76E-03
83GO:0051322: anaphase3.76E-03
84GO:0019464: glycine decarboxylation via glycine cleavage system3.76E-03
85GO:0009765: photosynthesis, light harvesting3.76E-03
86GO:0006109: regulation of carbohydrate metabolic process3.76E-03
87GO:2000122: negative regulation of stomatal complex development3.76E-03
88GO:0015846: polyamine transport3.76E-03
89GO:0015994: chlorophyll metabolic process3.76E-03
90GO:0006546: glycine catabolic process3.76E-03
91GO:0010600: regulation of auxin biosynthetic process3.76E-03
92GO:0006552: leucine catabolic process3.76E-03
93GO:0010508: positive regulation of autophagy3.76E-03
94GO:0051205: protein insertion into membrane3.76E-03
95GO:0015713: phosphoglycerate transport3.76E-03
96GO:0010037: response to carbon dioxide3.76E-03
97GO:0006808: regulation of nitrogen utilization3.76E-03
98GO:0006418: tRNA aminoacylation for protein translation3.81E-03
99GO:0003333: amino acid transmembrane transport4.19E-03
100GO:1902183: regulation of shoot apical meristem development4.83E-03
101GO:0010158: abaxial cell fate specification4.83E-03
102GO:0000304: response to singlet oxygen4.83E-03
103GO:0045038: protein import into chloroplast thylakoid membrane4.83E-03
104GO:0006097: glyoxylate cycle4.83E-03
105GO:0006461: protein complex assembly4.83E-03
106GO:0006284: base-excision repair5.46E-03
107GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.99E-03
108GO:0000470: maturation of LSU-rRNA5.99E-03
109GO:0009913: epidermal cell differentiation5.99E-03
110GO:0042793: transcription from plastid promoter5.99E-03
111GO:0003006: developmental process involved in reproduction5.99E-03
112GO:0009643: photosynthetic acclimation5.99E-03
113GO:0009955: adaxial/abaxial pattern specification7.24E-03
114GO:0042372: phylloquinone biosynthetic process7.24E-03
115GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.24E-03
116GO:0006458: 'de novo' protein folding7.24E-03
117GO:0042026: protein refolding7.24E-03
118GO:0030488: tRNA methylation7.24E-03
119GO:1901259: chloroplast rRNA processing7.24E-03
120GO:0019252: starch biosynthetic process7.97E-03
121GO:0010161: red light signaling pathway8.57E-03
122GO:0070370: cellular heat acclimation8.57E-03
123GO:0009645: response to low light intensity stimulus8.57E-03
124GO:0022904: respiratory electron transport chain8.57E-03
125GO:0008272: sulfate transport8.57E-03
126GO:0010103: stomatal complex morphogenesis8.57E-03
127GO:0030163: protein catabolic process9.75E-03
128GO:0030091: protein repair9.98E-03
129GO:0010928: regulation of auxin mediated signaling pathway9.98E-03
130GO:0005978: glycogen biosynthetic process9.98E-03
131GO:0009704: de-etiolation9.98E-03
132GO:0006353: DNA-templated transcription, termination9.98E-03
133GO:0008152: metabolic process1.01E-02
134GO:0006810: transport1.04E-02
135GO:0010093: specification of floral organ identity1.15E-02
136GO:0001558: regulation of cell growth1.15E-02
137GO:0009827: plant-type cell wall modification1.15E-02
138GO:0009657: plastid organization1.15E-02
139GO:0017004: cytochrome complex assembly1.15E-02
140GO:0051865: protein autoubiquitination1.30E-02
141GO:2000024: regulation of leaf development1.30E-02
142GO:0006783: heme biosynthetic process1.30E-02
143GO:0048507: meristem development1.30E-02
144GO:0006779: porphyrin-containing compound biosynthetic process1.47E-02
145GO:0042761: very long-chain fatty acid biosynthetic process1.47E-02
146GO:0048354: mucilage biosynthetic process involved in seed coat development1.47E-02
147GO:0016311: dephosphorylation1.54E-02
148GO:0048481: plant ovule development1.62E-02
149GO:0009817: defense response to fungus, incompatible interaction1.62E-02
150GO:0031627: telomeric loop formation1.64E-02
151GO:0048829: root cap development1.64E-02
152GO:0000160: phosphorelay signal transduction system1.71E-02
153GO:0010218: response to far red light1.79E-02
154GO:0010015: root morphogenesis1.82E-02
155GO:0019684: photosynthesis, light reaction1.82E-02
156GO:0009089: lysine biosynthetic process via diaminopimelate1.82E-02
157GO:0009073: aromatic amino acid family biosynthetic process1.82E-02
158GO:0043085: positive regulation of catalytic activity1.82E-02
159GO:0009750: response to fructose1.82E-02
160GO:0006415: translational termination1.82E-02
161GO:0009790: embryo development1.89E-02
162GO:0045037: protein import into chloroplast stroma2.00E-02
163GO:0010582: floral meristem determinacy2.00E-02
164GO:0071365: cellular response to auxin stimulus2.00E-02
165GO:0045454: cell redox homeostasis2.03E-02
166GO:0034599: cellular response to oxidative stress2.16E-02
167GO:0009718: anthocyanin-containing compound biosynthetic process2.19E-02
168GO:0010628: positive regulation of gene expression2.19E-02
169GO:0006108: malate metabolic process2.19E-02
170GO:0006006: glucose metabolic process2.19E-02
171GO:0018107: peptidyl-threonine phosphorylation2.19E-02
172GO:0009934: regulation of meristem structural organization2.39E-02
173GO:0006302: double-strand break repair2.39E-02
174GO:0048467: gynoecium development2.39E-02
175GO:0010207: photosystem II assembly2.39E-02
176GO:0009933: meristem structural organization2.39E-02
177GO:0019253: reductive pentose-phosphate cycle2.39E-02
178GO:0006631: fatty acid metabolic process2.46E-02
179GO:0005985: sucrose metabolic process2.59E-02
180GO:0010114: response to red light2.66E-02
181GO:0005975: carbohydrate metabolic process2.73E-02
182GO:0010025: wax biosynthetic process2.80E-02
183GO:0009644: response to high light intensity2.88E-02
184GO:0055114: oxidation-reduction process2.96E-02
185GO:0042742: defense response to bacterium2.96E-02
186GO:0006979: response to oxidative stress3.01E-02
187GO:0051302: regulation of cell division3.23E-02
188GO:0009768: photosynthesis, light harvesting in photosystem I3.23E-02
189GO:0007017: microtubule-based process3.23E-02
190GO:0019915: lipid storage3.46E-02
191GO:0031408: oxylipin biosynthetic process3.46E-02
192GO:0051321: meiotic cell cycle3.46E-02
193GO:0019748: secondary metabolic process3.69E-02
194GO:0030245: cellulose catabolic process3.69E-02
195GO:2000022: regulation of jasmonic acid mediated signaling pathway3.69E-02
196GO:0035428: hexose transmembrane transport3.69E-02
197GO:0001944: vasculature development3.92E-02
198GO:0010089: xylem development4.17E-02
199GO:0006096: glycolytic process4.24E-02
200GO:0042335: cuticle development4.66E-02
201GO:0000413: protein peptidyl-prolyl isomerization4.66E-02
202GO:0010154: fruit development4.91E-02
203GO:0006662: glycerol ether metabolic process4.91E-02
204GO:0048868: pollen tube development4.91E-02
205GO:0046323: glucose import4.91E-02
RankGO TermAdjusted P value
1GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0015129: lactate transmembrane transporter activity0.00E+00
4GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
5GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
6GO:0004134: 4-alpha-glucanotransferase activity0.00E+00
7GO:0046422: violaxanthin de-epoxidase activity0.00E+00
8GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
9GO:0048039: ubiquinone binding0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
12GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
13GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
14GO:0004822: isoleucine-tRNA ligase activity0.00E+00
15GO:0019843: rRNA binding8.75E-09
16GO:0005528: FK506 binding2.14E-08
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.75E-06
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.30E-05
19GO:0003735: structural constituent of ribosome1.52E-05
20GO:0016851: magnesium chelatase activity9.29E-05
21GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.60E-04
22GO:0016279: protein-lysine N-methyltransferase activity1.60E-04
23GO:0004565: beta-galactosidase activity2.02E-04
24GO:2001070: starch binding3.43E-04
25GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.46E-04
26GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.46E-04
27GO:0005227: calcium activated cation channel activity5.46E-04
28GO:0008184: glycogen phosphorylase activity5.46E-04
29GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.46E-04
30GO:0004645: phosphorylase activity5.46E-04
31GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity5.46E-04
32GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.46E-04
33GO:0004853: uroporphyrinogen decarboxylase activity5.46E-04
34GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity5.46E-04
35GO:0004825: methionine-tRNA ligase activity5.46E-04
36GO:0043621: protein self-association1.04E-03
37GO:0010297: heteropolysaccharide binding1.17E-03
38GO:0009977: proton motive force dependent protein transmembrane transporter activity1.17E-03
39GO:0033201: alpha-1,4-glucan synthase activity1.17E-03
40GO:0018708: thiol S-methyltransferase activity1.17E-03
41GO:0003844: 1,4-alpha-glucan branching enzyme activity1.17E-03
42GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.17E-03
43GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.17E-03
44GO:0008967: phosphoglycolate phosphatase activity1.17E-03
45GO:0016868: intramolecular transferase activity, phosphotransferases1.17E-03
46GO:0048038: quinone binding1.20E-03
47GO:0044183: protein binding involved in protein folding1.69E-03
48GO:0047372: acylglycerol lipase activity1.69E-03
49GO:0080054: low-affinity nitrate transmembrane transporter activity1.93E-03
50GO:0005504: fatty acid binding1.93E-03
51GO:0043169: cation binding1.93E-03
52GO:0004373: glycogen (starch) synthase activity1.93E-03
53GO:0090729: toxin activity1.93E-03
54GO:0017150: tRNA dihydrouridine synthase activity1.93E-03
55GO:0002161: aminoacyl-tRNA editing activity1.93E-03
56GO:0045174: glutathione dehydrogenase (ascorbate) activity1.93E-03
57GO:0071917: triose-phosphate transmembrane transporter activity1.93E-03
58GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.80E-03
59GO:0004375: glycine dehydrogenase (decarboxylating) activity2.80E-03
60GO:0019201: nucleotide kinase activity2.80E-03
61GO:0016149: translation release factor activity, codon specific2.80E-03
62GO:0015203: polyamine transmembrane transporter activity2.80E-03
63GO:0043023: ribosomal large subunit binding2.80E-03
64GO:0019104: DNA N-glycosylase activity3.76E-03
65GO:0045430: chalcone isomerase activity3.76E-03
66GO:0009011: starch synthase activity3.76E-03
67GO:0004506: squalene monooxygenase activity3.76E-03
68GO:0019199: transmembrane receptor protein kinase activity3.76E-03
69GO:0042277: peptide binding3.76E-03
70GO:0015120: phosphoglycerate transmembrane transporter activity3.76E-03
71GO:0004252: serine-type endopeptidase activity4.12E-03
72GO:0008725: DNA-3-methyladenine glycosylase activity4.83E-03
73GO:0030570: pectate lyase activity5.01E-03
74GO:0015293: symporter activity5.87E-03
75GO:0004812: aminoacyl-tRNA ligase activity5.92E-03
76GO:0004332: fructose-bisphosphate aldolase activity5.99E-03
77GO:0016208: AMP binding5.99E-03
78GO:0004130: cytochrome-c peroxidase activity5.99E-03
79GO:0016615: malate dehydrogenase activity5.99E-03
80GO:0051920: peroxiredoxin activity7.24E-03
81GO:0033743: peptide-methionine (R)-S-oxide reductase activity7.24E-03
82GO:0004017: adenylate kinase activity7.24E-03
83GO:0004602: glutathione peroxidase activity7.24E-03
84GO:0030060: L-malate dehydrogenase activity7.24E-03
85GO:0005261: cation channel activity7.24E-03
86GO:0000156: phosphorelay response regulator activity9.75E-03
87GO:0005337: nucleoside transmembrane transporter activity9.98E-03
88GO:0016209: antioxidant activity9.98E-03
89GO:0004033: aldo-keto reductase (NADP) activity9.98E-03
90GO:0008271: secondary active sulfate transmembrane transporter activity1.15E-02
91GO:0008173: RNA methyltransferase activity1.15E-02
92GO:0003747: translation release factor activity1.30E-02
93GO:0015174: basic amino acid transmembrane transporter activity1.47E-02
94GO:0008236: serine-type peptidase activity1.54E-02
95GO:0008047: enzyme activator activity1.64E-02
96GO:0004222: metalloendopeptidase activity1.79E-02
97GO:0003691: double-stranded telomeric DNA binding1.82E-02
98GO:0015116: sulfate transmembrane transporter activity2.00E-02
99GO:0008378: galactosyltransferase activity2.00E-02
100GO:0000049: tRNA binding2.00E-02
101GO:0004089: carbonate dehydratase activity2.19E-02
102GO:0008266: poly(U) RNA binding2.39E-02
103GO:0004190: aspartic-type endopeptidase activity2.59E-02
104GO:0003924: GTPase activity2.77E-02
105GO:0031409: pigment binding2.80E-02
106GO:0051537: 2 iron, 2 sulfur cluster binding2.88E-02
107GO:0004857: enzyme inhibitor activity3.01E-02
108GO:0009055: electron carrier activity3.07E-02
109GO:0008408: 3'-5' exonuclease activity3.46E-02
110GO:0033612: receptor serine/threonine kinase binding3.46E-02
111GO:0008168: methyltransferase activity3.83E-02
112GO:0022891: substrate-specific transmembrane transporter activity3.92E-02
113GO:0008810: cellulase activity3.92E-02
114GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.37E-02
115GO:0047134: protein-disulfide reductase activity4.41E-02
116GO:0016491: oxidoreductase activity4.88E-02
117GO:0001085: RNA polymerase II transcription factor binding4.91E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
3GO:0043235: receptor complex0.00E+00
4GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
5GO:0044391: ribosomal subunit0.00E+00
6GO:0009507: chloroplast1.25E-50
7GO:0009570: chloroplast stroma1.81E-40
8GO:0009534: chloroplast thylakoid7.16E-38
9GO:0009535: chloroplast thylakoid membrane5.55E-33
10GO:0009941: chloroplast envelope1.18E-28
11GO:0009579: thylakoid1.03E-20
12GO:0009543: chloroplast thylakoid lumen2.51E-18
13GO:0031977: thylakoid lumen6.49E-14
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.69E-06
15GO:0009706: chloroplast inner membrane9.39E-06
16GO:0005840: ribosome1.14E-05
17GO:0030095: chloroplast photosystem II1.26E-05
18GO:0010287: plastoglobule1.62E-05
19GO:0009654: photosystem II oxygen evolving complex3.14E-05
20GO:0009501: amyloplast3.45E-05
21GO:0010007: magnesium chelatase complex4.36E-05
22GO:0019898: extrinsic component of membrane1.30E-04
23GO:0009508: plastid chromosome2.02E-04
24GO:0010319: stromule2.30E-04
25GO:0009295: nucleoid2.30E-04
26GO:0031361: integral component of thylakoid membrane5.46E-04
27GO:0000791: euchromatin5.46E-04
28GO:0009533: chloroplast stromal thylakoid5.86E-04
29GO:0009538: photosystem I reaction center7.29E-04
30GO:0000427: plastid-encoded plastid RNA polymerase complex1.17E-03
31GO:0030093: chloroplast photosystem I1.17E-03
32GO:0030870: Mre11 complex1.17E-03
33GO:0043036: starch grain1.17E-03
34GO:0033281: TAT protein transport complex1.93E-03
35GO:0005960: glycine cleavage complex2.80E-03
36GO:0048046: apoplast3.59E-03
37GO:0015935: small ribosomal subunit4.19E-03
38GO:0031969: chloroplast membrane4.28E-03
39GO:0055035: plastid thylakoid membrane4.83E-03
40GO:0000795: synaptonemal complex4.83E-03
41GO:0009536: plastid6.82E-03
42GO:0009840: chloroplastic endopeptidase Clp complex7.24E-03
43GO:0016272: prefoldin complex7.24E-03
44GO:0009523: photosystem II7.97E-03
45GO:0016020: membrane9.21E-03
46GO:0031305: integral component of mitochondrial inner membrane9.98E-03
47GO:0000783: nuclear telomere cap complex1.15E-02
48GO:0005763: mitochondrial small ribosomal subunit1.30E-02
49GO:0045298: tubulin complex1.30E-02
50GO:0005740: mitochondrial envelope1.64E-02
51GO:0009574: preprophase band2.19E-02
52GO:0030076: light-harvesting complex2.59E-02
53GO:0043234: protein complex2.80E-02
54GO:0042651: thylakoid membrane3.23E-02
55GO:0009532: plastid stroma3.46E-02
56GO:0005773: vacuole4.55E-02
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Gene type



Gene DE type