co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G79150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090070: positive regulation of ribosome biogenesis	0.00E+00
2	GO:0039694: viral RNA genome replication	0.00E+00
3	GO:0090069: regulation of ribosome biogenesis	0.00E+00
4	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
5	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
6	GO:0006364: rRNA processing	6.37E-19
7	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.70E-07
8	GO:0042254: ribosome biogenesis	2.46E-06
9	GO:0009553: embryo sac development	2.95E-06
10	GO:0009451: RNA modification	1.34E-05
11	GO:0010501: RNA secondary structure unwinding	3.46E-05
12	GO:0036228: protein targeting to nuclear inner membrane	1.12E-04
13	GO:0000469: cleavage involved in rRNA processing	1.12E-04
14	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.12E-04
15	GO:0030490: maturation of SSU-rRNA	1.12E-04
16	GO:1902182: shoot apical meristem development	1.12E-04
17	GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	1.12E-04
18	GO:2000232: regulation of rRNA processing	1.12E-04
19	GO:0043985: histone H4-R3 methylation	1.12E-04
20	GO:0080009: mRNA methylation	2.61E-04
21	GO:0034470: ncRNA processing	2.61E-04
22	GO:0006421: asparaginyl-tRNA aminoacylation	4.32E-04
23	GO:0045604: regulation of epidermal cell differentiation	4.32E-04
24	GO:0009793: embryo development ending in seed dormancy	4.49E-04
25	GO:0009561: megagametogenesis	5.85E-04
26	GO:0007276: gamete generation	6.19E-04
27	GO:0000460: maturation of 5.8S rRNA	8.23E-04
28	GO:0006479: protein methylation	8.23E-04
29	GO:1900864: mitochondrial RNA modification	8.23E-04
30	GO:0046345: abscisic acid catabolic process	8.23E-04
31	GO:0042273: ribosomal large subunit biogenesis	8.23E-04
32	GO:0048825: cotyledon development	8.42E-04
33	GO:0009790: embryo development	1.03E-03
34	GO:0006405: RNA export from nucleus	1.04E-03
35	GO:0000470: maturation of LSU-rRNA	1.27E-03
36	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.27E-03
37	GO:0030488: tRNA methylation	1.52E-03
38	GO:0048444: floral organ morphogenesis	1.52E-03
39	GO:0016444: somatic cell DNA recombination	1.52E-03
40	GO:0010077: maintenance of inflorescence meristem identity	1.52E-03
41	GO:0045995: regulation of embryonic development	1.78E-03
42	GO:0001522: pseudouridine synthesis	2.06E-03
43	GO:0000028: ribosomal small subunit assembly	2.06E-03
44	GO:0019827: stem cell population maintenance	2.06E-03
45	GO:0042255: ribosome assembly	2.06E-03
46	GO:0051301: cell division	2.30E-03
47	GO:0009880: embryonic pattern specification	2.35E-03
48	GO:0006261: DNA-dependent DNA replication	2.35E-03
49	GO:2000024: regulation of leaf development	2.66E-03
50	GO:0001708: cell fate specification	2.66E-03
51	GO:0006349: regulation of gene expression by genetic imprinting	2.97E-03
52	GO:1900865: chloroplast RNA modification	2.97E-03
53	GO:0006913: nucleocytoplasmic transport	3.65E-03
54	GO:0010582: floral meristem determinacy	4.00E-03
55	GO:2000012: regulation of auxin polar transport	4.36E-03
56	GO:0010030: positive regulation of seed germination	5.13E-03
57	GO:0000027: ribosomal large subunit assembly	5.93E-03
58	GO:0051302: regulation of cell division	6.35E-03
59	GO:0006334: nucleosome assembly	6.78E-03
60	GO:0009294: DNA mediated transformation	7.67E-03
61	GO:0006606: protein import into nucleus	9.08E-03
62	GO:0006342: chromatin silencing	9.57E-03
63	GO:0009960: endosperm development	9.57E-03
64	GO:0010305: leaf vascular tissue pattern formation	9.57E-03
65	GO:0080156: mitochondrial mRNA modification	1.11E-02
66	GO:0048366: leaf development	1.61E-02
67	GO:0000724: double-strand break repair via homologous recombination	1.99E-02
68	GO:0032259: methylation	2.40E-02
69	GO:0009926: auxin polar transport	2.46E-02
70	GO:0006260: DNA replication	2.82E-02
71	GO:0009909: regulation of flower development	3.27E-02
72	GO:0006417: regulation of translation	3.27E-02
73	GO:0006396: RNA processing	3.99E-02
74	GO:0009555: pollen development	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
4	GO:0003723: RNA binding	2.85E-15
5	GO:0000166: nucleotide binding	4.78E-15
6	GO:0008026: ATP-dependent helicase activity	1.33E-07
7	GO:0030515: snoRNA binding	4.44E-07
8	GO:0043021: ribonucleoprotein complex binding	6.45E-07
9	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.26E-06
10	GO:0001054: RNA polymerase I activity	3.48E-06
11	GO:0004004: ATP-dependent RNA helicase activity	4.83E-06
12	GO:0004519: endonuclease activity	1.68E-05
13	GO:0042134: rRNA primary transcript binding	1.12E-04
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.12E-04
15	GO:0004816: asparagine-tRNA ligase activity	4.32E-04
16	GO:0070181: small ribosomal subunit rRNA binding	4.32E-04
17	GO:0003689: DNA clamp loader activity	1.04E-03
18	GO:0043022: ribosome binding	2.06E-03
19	GO:0017056: structural constituent of nuclear pore	2.06E-03
20	GO:0008168: methyltransferase activity	2.09E-03
21	GO:0042393: histone binding	2.37E-03
22	GO:0005487: nucleocytoplasmic transporter activity	2.97E-03
23	GO:0004521: endoribonuclease activity	4.00E-03
24	GO:0001056: RNA polymerase III activity	4.00E-03
25	GO:0003887: DNA-directed DNA polymerase activity	5.52E-03
26	GO:0043130: ubiquitin binding	5.93E-03
27	GO:0003713: transcription coactivator activity	9.57E-03
28	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.68E-02
29	GO:0016787: hydrolase activity	1.86E-02
30	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.12E-02
31	GO:0003677: DNA binding	3.26E-02
32	GO:0005524: ATP binding	3.44E-02
33	GO:0016887: ATPase activity	3.87E-02
34	GO:0003729: mRNA binding	3.90E-02
35	GO:0051082: unfolded protein binding	3.91E-02
36	GO:0004386: helicase activity	4.16E-02
37	GO:0019843: rRNA binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0034457: Mpp10 complex	0.00E+00
2	GO:0034455: t-UTP complex	0.00E+00
3	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0019034: viral replication complex	0.00E+00
6	GO:0070545: PeBoW complex	0.00E+00
7	GO:0005730: nucleolus	1.60E-29
8	GO:0005634: nucleus	1.54E-11
9	GO:0032040: small-subunit processome	3.00E-10
10	GO:0030687: preribosome, large subunit precursor	1.89E-09
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	6.25E-09
12	GO:0005736: DNA-directed RNA polymerase I complex	1.44E-06
13	GO:0030688: preribosome, small subunit precursor	1.12E-04
14	GO:0044611: nuclear pore inner ring	1.12E-04
15	GO:0005834: heterotrimeric G-protein complex	5.53E-04
16	GO:0005663: DNA replication factor C complex	8.23E-04
17	GO:0005654: nucleoplasm	8.24E-04
18	GO:0016363: nuclear matrix	1.52E-03
19	GO:0034399: nuclear periphery	2.06E-03
20	GO:0005763: mitochondrial small ribosomal subunit	2.66E-03
21	GO:0005666: DNA-directed RNA polymerase III complex	2.97E-03
22	GO:0015030: Cajal body	2.97E-03
23	GO:0019013: viral nucleocapsid	4.36E-03
24	GO:0043234: protein complex	5.52E-03
25	GO:0042651: thylakoid membrane	6.35E-03
26	GO:0015935: small ribosomal subunit	6.78E-03
27	GO:0019898: extrinsic component of membrane	1.06E-02
28	GO:0005829: cytosol	1.27E-02
29	GO:0030529: intracellular ribonucleoprotein complex	1.44E-02
30	GO:0005643: nuclear pore	1.74E-02
31	GO:0015934: large ribosomal subunit	1.93E-02
32	GO:0016607: nuclear speck	3.51E-02
33	GO:0005732: small nucleolar ribonucleoprotein complex	4.16E-02