co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G78820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030155: regulation of cell adhesion	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
4	GO:0002184: cytoplasmic translational termination	0.00E+00
5	GO:0015979: photosynthesis	1.19E-10
6	GO:0032544: plastid translation	1.17E-08
7	GO:0009735: response to cytokinin	7.49E-08
8	GO:0006412: translation	1.64E-07
9	GO:0009409: response to cold	7.92E-07
10	GO:0043085: positive regulation of catalytic activity	5.87E-06
11	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.48E-06
12	GO:0006109: regulation of carbohydrate metabolic process	1.59E-05
13	GO:0034599: cellular response to oxidative stress	2.05E-05
14	GO:0006662: glycerol ether metabolic process	6.23E-05
15	GO:0042254: ribosome biogenesis	7.32E-05
16	GO:0009645: response to low light intensity stimulus	7.34E-05
17	GO:0000025: maltose catabolic process	1.40E-04
18	GO:0043489: RNA stabilization	1.40E-04
19	GO:0010480: microsporocyte differentiation	1.40E-04
20	GO:0000023: maltose metabolic process	1.40E-04
21	GO:0015995: chlorophyll biosynthetic process	1.86E-04
22	GO:0009773: photosynthetic electron transport in photosystem I	2.44E-04
23	GO:0005983: starch catabolic process	2.81E-04
24	GO:0005976: polysaccharide metabolic process	3.20E-04
25	GO:0006521: regulation of cellular amino acid metabolic process	3.20E-04
26	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.20E-04
27	GO:0006094: gluconeogenesis	3.21E-04
28	GO:0048281: inflorescence morphogenesis	5.26E-04
29	GO:0006000: fructose metabolic process	5.26E-04
30	GO:0080055: low-affinity nitrate transport	5.26E-04
31	GO:0009768: photosynthesis, light harvesting in photosystem I	5.53E-04
32	GO:0080167: response to karrikin	7.52E-04
33	GO:0006241: CTP biosynthetic process	7.53E-04
34	GO:0006165: nucleoside diphosphate phosphorylation	7.53E-04
35	GO:0006228: UTP biosynthetic process	7.53E-04
36	GO:0010148: transpiration	7.53E-04
37	GO:0010731: protein glutathionylation	7.53E-04
38	GO:0051085: chaperone mediated protein folding requiring cofactor	7.53E-04
39	GO:0055114: oxidation-reduction process	8.59E-04
40	GO:0045454: cell redox homeostasis	9.84E-04
41	GO:0019464: glycine decarboxylation via glycine cleavage system	9.98E-04
42	GO:0009765: photosynthesis, light harvesting	9.98E-04
43	GO:0006183: GTP biosynthetic process	9.98E-04
44	GO:0006552: leucine catabolic process	9.98E-04
45	GO:2000122: negative regulation of stomatal complex development	9.98E-04
46	GO:0006546: glycine catabolic process	9.98E-04
47	GO:0010021: amylopectin biosynthetic process	9.98E-04
48	GO:0010037: response to carbon dioxide	9.98E-04
49	GO:0015976: carbon utilization	9.98E-04
50	GO:0006810: transport	1.25E-03
51	GO:0006461: protein complex assembly	1.26E-03
52	GO:0010190: cytochrome b6f complex assembly	1.55E-03
53	GO:0010027: thylakoid membrane organization	1.71E-03
54	GO:0009955: adaxial/abaxial pattern specification	1.86E-03
55	GO:0042026: protein refolding	1.86E-03
56	GO:1901259: chloroplast rRNA processing	1.86E-03
57	GO:0009627: systemic acquired resistance	1.91E-03
58	GO:0048437: floral organ development	2.18E-03
59	GO:0010196: nonphotochemical quenching	2.18E-03
60	GO:0070370: cellular heat acclimation	2.18E-03
61	GO:0022904: respiratory electron transport chain	2.18E-03
62	GO:0010103: stomatal complex morphogenesis	2.18E-03
63	GO:0009817: defense response to fungus, incompatible interaction	2.22E-03
64	GO:0018298: protein-chromophore linkage	2.22E-03
65	GO:0006979: response to oxidative stress	2.42E-03
66	GO:0006353: DNA-templated transcription, termination	2.52E-03
67	GO:0030091: protein repair	2.52E-03
68	GO:0006002: fructose 6-phosphate metabolic process	2.88E-03
69	GO:0009657: plastid organization	2.88E-03
70	GO:0001558: regulation of cell growth	2.88E-03
71	GO:0006783: heme biosynthetic process	3.26E-03
72	GO:0042761: very long-chain fatty acid biosynthetic process	3.65E-03
73	GO:0009644: response to high light intensity	3.90E-03
74	GO:0006782: protoporphyrinogen IX biosynthetic process	4.06E-03
75	GO:0009750: response to fructose	4.48E-03
76	GO:0048229: gametophyte development	4.48E-03
77	GO:0010015: root morphogenesis	4.48E-03
78	GO:0010582: floral meristem determinacy	4.92E-03
79	GO:0010075: regulation of meristem growth	5.37E-03
80	GO:0005986: sucrose biosynthetic process	5.37E-03
81	GO:0043086: negative regulation of catalytic activity	5.73E-03
82	GO:0010020: chloroplast fission	5.84E-03
83	GO:0010207: photosystem II assembly	5.84E-03
84	GO:0009266: response to temperature stimulus	5.84E-03
85	GO:0009934: regulation of meristem structural organization	5.84E-03
86	GO:0006302: double-strand break repair	5.84E-03
87	GO:0010025: wax biosynthetic process	6.81E-03
88	GO:0006636: unsaturated fatty acid biosynthetic process	6.81E-03
89	GO:0009944: polarity specification of adaxial/abaxial axis	7.32E-03
90	GO:0006289: nucleotide-excision repair	7.32E-03
91	GO:0007017: microtubule-based process	7.84E-03
92	GO:0051302: regulation of cell division	7.84E-03
93	GO:0061077: chaperone-mediated protein folding	8.38E-03
94	GO:0051321: meiotic cell cycle	8.38E-03
95	GO:0007005: mitochondrion organization	8.92E-03
96	GO:0030245: cellulose catabolic process	8.92E-03
97	GO:0042742: defense response to bacterium	9.37E-03
98	GO:0009686: gibberellin biosynthetic process	9.48E-03
99	GO:0009411: response to UV	9.48E-03
100	GO:0001944: vasculature development	9.48E-03
101	GO:0009790: embryo development	1.01E-02
102	GO:0048653: anther development	1.12E-02
103	GO:0009646: response to absence of light	1.25E-02
104	GO:0019252: starch biosynthetic process	1.31E-02
105	GO:0000302: response to reactive oxygen species	1.37E-02
106	GO:0006310: DNA recombination	1.58E-02
107	GO:0009911: positive regulation of flower development	1.79E-02
108	GO:0009658: chloroplast organization	1.85E-02
109	GO:0009607: response to biotic stimulus	1.86E-02
110	GO:0016311: dephosphorylation	2.08E-02
111	GO:0008219: cell death	2.16E-02
112	GO:0010218: response to far red light	2.31E-02
113	GO:0009631: cold acclimation	2.39E-02
114	GO:0010119: regulation of stomatal movement	2.39E-02
115	GO:0006865: amino acid transport	2.47E-02
116	GO:0045087: innate immune response	2.55E-02
117	GO:0009637: response to blue light	2.55E-02
118	GO:0042542: response to hydrogen peroxide	2.97E-02
119	GO:0010114: response to red light	3.06E-02
120	GO:0032259: methylation	3.25E-02
121	GO:0009965: leaf morphogenesis	3.32E-02
122	GO:0000165: MAPK cascade	3.50E-02
123	GO:0009664: plant-type cell wall organization	3.59E-02
124	GO:0009585: red, far-red light phototransduction	3.78E-02
125	GO:0006857: oligopeptide transport	3.97E-02
126	GO:0006096: glycolytic process	4.26E-02
127	GO:0009740: gibberellic acid mediated signaling pathway	4.65E-02
128	GO:0006396: RNA processing	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
2	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
3	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
4	GO:0048039: ubiquinone binding	0.00E+00
5	GO:0009899: ent-kaurene synthase activity	0.00E+00
6	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
7	GO:0051738: xanthophyll binding	0.00E+00
8	GO:0019843: rRNA binding	1.77E-11
9	GO:0003735: structural constituent of ribosome	4.89E-09
10	GO:0008047: enzyme activator activity	4.49E-06
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.59E-05
12	GO:0047134: protein-disulfide reductase activity	4.90E-05
13	GO:0004791: thioredoxin-disulfide reductase activity	6.97E-05
14	GO:0048038: quinone binding	8.60E-05
15	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.04E-04
16	GO:0004853: uroporphyrinogen decarboxylase activity	1.40E-04
17	GO:0004134: 4-alpha-glucanotransferase activity	1.40E-04
18	GO:0016168: chlorophyll binding	1.60E-04
19	GO:0033201: alpha-1,4-glucan synthase activity	3.20E-04
20	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.20E-04
21	GO:0008967: phosphoglycolate phosphatase activity	3.20E-04
22	GO:0018708: thiol S-methyltransferase activity	3.20E-04
23	GO:0042389: omega-3 fatty acid desaturase activity	3.20E-04
24	GO:0016868: intramolecular transferase activity, phosphotransferases	3.20E-04
25	GO:0010297: heteropolysaccharide binding	3.20E-04
26	GO:0031409: pigment binding	4.54E-04
27	GO:0005528: FK506 binding	5.03E-04
28	GO:0004857: enzyme inhibitor activity	5.03E-04
29	GO:0004373: glycogen (starch) synthase activity	5.26E-04
30	GO:0045174: glutathione dehydrogenase (ascorbate) activity	5.26E-04
31	GO:0080054: low-affinity nitrate transmembrane transporter activity	5.26E-04
32	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.53E-04
33	GO:0019201: nucleotide kinase activity	7.53E-04
34	GO:0016851: magnesium chelatase activity	7.53E-04
35	GO:0004550: nucleoside diphosphate kinase activity	7.53E-04
36	GO:0043023: ribosomal large subunit binding	7.53E-04
37	GO:0051082: unfolded protein binding	9.38E-04
38	GO:0015035: protein disulfide oxidoreductase activity	9.73E-04
39	GO:0019199: transmembrane receptor protein kinase activity	9.98E-04
40	GO:0009011: starch synthase activity	9.98E-04
41	GO:0042277: peptide binding	9.98E-04
42	GO:0004332: fructose-bisphosphate aldolase activity	1.55E-03
43	GO:0004130: cytochrome-c peroxidase activity	1.55E-03
44	GO:2001070: starch binding	1.55E-03
45	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.86E-03
46	GO:0004017: adenylate kinase activity	1.86E-03
47	GO:0004602: glutathione peroxidase activity	1.86E-03
48	GO:0051920: peroxiredoxin activity	1.86E-03
49	GO:0016209: antioxidant activity	2.52E-03
50	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.88E-03
51	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.20E-03
52	GO:0044183: protein binding involved in protein folding	4.48E-03
53	GO:0004089: carbonate dehydratase activity	5.37E-03
54	GO:0031072: heat shock protein binding	5.37E-03
55	GO:0008266: poly(U) RNA binding	5.84E-03
56	GO:0033612: receptor serine/threonine kinase binding	8.38E-03
57	GO:0008408: 3'-5' exonuclease activity	8.38E-03
58	GO:0030570: pectate lyase activity	9.48E-03
59	GO:0008810: cellulase activity	9.48E-03
60	GO:0022891: substrate-specific transmembrane transporter activity	9.48E-03
61	GO:0050662: coenzyme binding	1.25E-02
62	GO:0016491: oxidoreductase activity	1.42E-02
63	GO:0008237: metallopeptidase activity	1.64E-02
64	GO:0005200: structural constituent of cytoskeleton	1.64E-02
65	GO:0016597: amino acid binding	1.71E-02
66	GO:0008168: methyltransferase activity	1.78E-02
67	GO:0004601: peroxidase activity	1.85E-02
68	GO:0004222: metalloendopeptidase activity	2.31E-02
69	GO:0030145: manganese ion binding	2.39E-02
70	GO:0051539: 4 iron, 4 sulfur cluster binding	2.80E-02
71	GO:0004364: glutathione transferase activity	2.97E-02
72	GO:0003723: RNA binding	3.20E-02
73	GO:0009055: electron carrier activity	3.64E-02
74	GO:0015171: amino acid transmembrane transporter activity	4.06E-02
75	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0009507: chloroplast	2.68E-40
4	GO:0009535: chloroplast thylakoid membrane	2.10E-30
5	GO:0009570: chloroplast stroma	1.04E-27
6	GO:0009941: chloroplast envelope	3.36E-27
7	GO:0009579: thylakoid	8.23E-24
8	GO:0009534: chloroplast thylakoid	3.29E-19
9	GO:0005840: ribosome	2.04E-08
10	GO:0009543: chloroplast thylakoid lumen	2.12E-08
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.46E-06
12	GO:0010319: stromule	5.02E-06
13	GO:0031977: thylakoid lumen	2.65E-05
14	GO:0009523: photosystem II	7.76E-05
15	GO:0009538: photosystem I reaction center	9.51E-05
16	GO:0009782: photosystem I antenna complex	1.40E-04
17	GO:0000791: euchromatin	1.40E-04
18	GO:0010287: plastoglobule	1.44E-04
19	GO:0030093: chloroplast photosystem I	3.20E-04
20	GO:0030870: Mre11 complex	3.20E-04
21	GO:0030095: chloroplast photosystem II	3.63E-04
22	GO:0030076: light-harvesting complex	4.07E-04
23	GO:0010007: magnesium chelatase complex	5.26E-04
24	GO:0015935: small ribosomal subunit	6.07E-04
25	GO:0005960: glycine cleavage complex	7.53E-04
26	GO:0009517: PSII associated light-harvesting complex II	9.98E-04
27	GO:0009522: photosystem I	1.05E-03
28	GO:0030915: Smc5-Smc6 complex	1.26E-03
29	GO:0000795: synaptonemal complex	1.26E-03
30	GO:0009295: nucleoid	1.53E-03
31	GO:0016272: prefoldin complex	1.86E-03
32	GO:0009533: chloroplast stromal thylakoid	2.18E-03
33	GO:0031305: integral component of mitochondrial inner membrane	2.52E-03
34	GO:0009501: amyloplast	2.52E-03
35	GO:0015934: large ribosomal subunit	2.56E-03
36	GO:0045298: tubulin complex	3.26E-03
37	GO:0005763: mitochondrial small ribosomal subunit	3.26E-03
38	GO:0009536: plastid	3.41E-03
39	GO:0005740: mitochondrial envelope	4.06E-03
40	GO:0031969: chloroplast membrane	4.23E-03
41	GO:0009508: plastid chromosome	5.37E-03
42	GO:0016020: membrane	5.63E-03
43	GO:0048046: apoplast	7.47E-03
44	GO:0009654: photosystem II oxygen evolving complex	7.84E-03
45	GO:0042651: thylakoid membrane	7.84E-03
46	GO:0019898: extrinsic component of membrane	1.31E-02
47	GO:0000785: chromatin	1.44E-02
48	GO:0030529: intracellular ribonucleoprotein complex	1.79E-02
49	GO:0005874: microtubule	2.22E-02
50	GO:0005834: heterotrimeric G-protein complex	4.45E-02
51	GO:0009706: chloroplast inner membrane	4.85E-02