Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G78630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019323: pentose catabolic process0.00E+00
2GO:0000025: maltose catabolic process0.00E+00
3GO:0006223: uracil salvage0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:2000605: positive regulation of secondary growth0.00E+00
10GO:1905177: tracheary element differentiation0.00E+00
11GO:0000023: maltose metabolic process0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0005983: starch catabolic process1.86E-12
14GO:0032544: plastid translation9.33E-12
15GO:0009409: response to cold1.35E-09
16GO:0006412: translation2.12E-09
17GO:0042254: ribosome biogenesis9.63E-09
18GO:0009735: response to cytokinin1.41E-08
19GO:0009631: cold acclimation1.87E-08
20GO:0019464: glycine decarboxylation via glycine cleavage system5.35E-07
21GO:0015979: photosynthesis6.01E-07
22GO:0010025: wax biosynthetic process4.10E-06
23GO:0009817: defense response to fungus, incompatible interaction1.19E-04
24GO:0009913: epidermal cell differentiation1.54E-04
25GO:0042742: defense response to bacterium1.82E-04
26GO:0010196: nonphotochemical quenching2.73E-04
27GO:0042335: cuticle development3.14E-04
28GO:0000413: protein peptidyl-prolyl isomerization3.14E-04
29GO:0005980: glycogen catabolic process3.27E-04
30GO:0043489: RNA stabilization3.27E-04
31GO:0044262: cellular carbohydrate metabolic process3.27E-04
32GO:0032958: inositol phosphate biosynthetic process3.27E-04
33GO:0071588: hydrogen peroxide mediated signaling pathway3.27E-04
34GO:0008610: lipid biosynthetic process3.44E-04
35GO:0019252: starch biosynthetic process4.19E-04
36GO:0010206: photosystem II repair5.07E-04
37GO:0042761: very long-chain fatty acid biosynthetic process5.99E-04
38GO:0009629: response to gravity7.13E-04
39GO:0005976: polysaccharide metabolic process7.13E-04
40GO:0007154: cell communication7.13E-04
41GO:0010353: response to trehalose7.13E-04
42GO:0030388: fructose 1,6-bisphosphate metabolic process7.13E-04
43GO:0010270: photosystem II oxygen evolving complex assembly7.13E-04
44GO:0010027: thylakoid membrane organization7.33E-04
45GO:0009658: chloroplast organization7.53E-04
46GO:0009773: photosynthetic electron transport in photosystem I8.05E-04
47GO:0000038: very long-chain fatty acid metabolic process8.05E-04
48GO:0006000: fructose metabolic process1.16E-03
49GO:0006518: peptide metabolic process1.16E-03
50GO:0010623: programmed cell death involved in cell development1.16E-03
51GO:0090153: regulation of sphingolipid biosynthetic process1.16E-03
52GO:2001295: malonyl-CoA biosynthetic process1.16E-03
53GO:0010143: cutin biosynthetic process1.17E-03
54GO:0006633: fatty acid biosynthetic process1.53E-03
55GO:0006289: nucleotide-excision repair1.61E-03
56GO:0009052: pentose-phosphate shunt, non-oxidative branch1.66E-03
57GO:0006241: CTP biosynthetic process1.66E-03
58GO:0010731: protein glutathionylation1.66E-03
59GO:0006424: glutamyl-tRNA aminoacylation1.66E-03
60GO:0006165: nucleoside diphosphate phosphorylation1.66E-03
61GO:0006228: UTP biosynthetic process1.66E-03
62GO:0006020: inositol metabolic process1.66E-03
63GO:0007017: microtubule-based process1.78E-03
64GO:0005975: carbohydrate metabolic process1.78E-03
65GO:0006183: GTP biosynthetic process2.23E-03
66GO:0045727: positive regulation of translation2.23E-03
67GO:2000122: negative regulation of stomatal complex development2.23E-03
68GO:0006546: glycine catabolic process2.23E-03
69GO:0010508: positive regulation of autophagy2.23E-03
70GO:0044206: UMP salvage2.23E-03
71GO:0010021: amylopectin biosynthetic process2.23E-03
72GO:0010037: response to carbon dioxide2.23E-03
73GO:0006808: regulation of nitrogen utilization2.23E-03
74GO:0015976: carbon utilization2.23E-03
75GO:0009765: photosynthesis, light harvesting2.23E-03
76GO:0070417: cellular response to cold2.74E-03
77GO:0032543: mitochondrial translation2.84E-03
78GO:0006544: glycine metabolic process2.84E-03
79GO:0043097: pyrimidine nucleoside salvage2.84E-03
80GO:0006461: protein complex assembly2.84E-03
81GO:0009435: NAD biosynthetic process2.84E-03
82GO:0042631: cellular response to water deprivation2.96E-03
83GO:0006828: manganese ion transport3.51E-03
84GO:0006206: pyrimidine nucleobase metabolic process3.51E-03
85GO:0006563: L-serine metabolic process3.51E-03
86GO:0042549: photosystem II stabilization3.51E-03
87GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.51E-03
88GO:0000470: maturation of LSU-rRNA3.51E-03
89GO:0000302: response to reactive oxygen species3.94E-03
90GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.23E-03
91GO:1901259: chloroplast rRNA processing4.23E-03
92GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.23E-03
93GO:0010019: chloroplast-nucleus signaling pathway4.23E-03
94GO:0010555: response to mannitol4.23E-03
95GO:0009955: adaxial/abaxial pattern specification4.23E-03
96GO:0080167: response to karrikin4.77E-03
97GO:0009645: response to low light intensity stimulus4.99E-03
98GO:0050829: defense response to Gram-negative bacterium4.99E-03
99GO:0009610: response to symbiotic fungus4.99E-03
100GO:0046686: response to cadmium ion5.55E-03
101GO:0030091: protein repair5.80E-03
102GO:0005978: glycogen biosynthetic process5.80E-03
103GO:0009642: response to light intensity5.80E-03
104GO:0009657: plastid organization6.65E-03
105GO:0006002: fructose 6-phosphate metabolic process6.65E-03
106GO:0071555: cell wall organization6.66E-03
107GO:0015995: chlorophyll biosynthetic process6.71E-03
108GO:0006783: heme biosynthetic process7.54E-03
109GO:0035999: tetrahydrofolate interconversion8.48E-03
110GO:0005982: starch metabolic process8.48E-03
111GO:0007623: circadian rhythm8.71E-03
112GO:0009853: photorespiration9.44E-03
113GO:0006782: protoporphyrinogen IX biosynthetic process9.45E-03
114GO:0006949: syncytium formation9.45E-03
115GO:0034599: cellular response to oxidative stress9.88E-03
116GO:0006816: calcium ion transport1.05E-02
117GO:0009089: lysine biosynthetic process via diaminopimelate1.05E-02
118GO:0006415: translational termination1.05E-02
119GO:0009750: response to fructose1.05E-02
120GO:0018119: peptidyl-cysteine S-nitrosylation1.05E-02
121GO:0016485: protein processing1.05E-02
122GO:0009737: response to abscisic acid1.09E-02
123GO:0016024: CDP-diacylglycerol biosynthetic process1.15E-02
124GO:0045037: protein import into chloroplast stroma1.15E-02
125GO:0010114: response to red light1.22E-02
126GO:0010102: lateral root morphogenesis1.26E-02
127GO:0006006: glucose metabolic process1.26E-02
128GO:0006807: nitrogen compound metabolic process1.26E-02
129GO:0006094: gluconeogenesis1.26E-02
130GO:0009767: photosynthetic electron transport chain1.26E-02
131GO:0005986: sucrose biosynthetic process1.26E-02
132GO:0010207: photosystem II assembly1.37E-02
133GO:0010020: chloroplast fission1.37E-02
134GO:0019253: reductive pentose-phosphate cycle1.37E-02
135GO:0009266: response to temperature stimulus1.37E-02
136GO:0055114: oxidation-reduction process1.60E-02
137GO:0009833: plant-type primary cell wall biogenesis1.61E-02
138GO:0000027: ribosomal large subunit assembly1.73E-02
139GO:0030150: protein import into mitochondrial matrix1.73E-02
140GO:0051017: actin filament bundle assembly1.73E-02
141GO:0019344: cysteine biosynthetic process1.73E-02
142GO:0009116: nucleoside metabolic process1.73E-02
143GO:0006418: tRNA aminoacylation for protein translation1.86E-02
144GO:0009768: photosynthesis, light harvesting in photosystem I1.86E-02
145GO:0016114: terpenoid biosynthetic process1.99E-02
146GO:0016998: cell wall macromolecule catabolic process1.99E-02
147GO:0009416: response to light stimulus2.05E-02
148GO:0035428: hexose transmembrane transport2.12E-02
149GO:0030245: cellulose catabolic process2.12E-02
150GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.25E-02
151GO:0009411: response to UV2.25E-02
152GO:0006012: galactose metabolic process2.25E-02
153GO:0009624: response to nematode2.35E-02
154GO:0006284: base-excision repair2.39E-02
155GO:0010089: xylem development2.39E-02
156GO:0045454: cell redox homeostasis2.50E-02
157GO:0048868: pollen tube development2.82E-02
158GO:0046323: glucose import2.82E-02
159GO:0015986: ATP synthesis coupled proton transport2.97E-02
160GO:0048825: cotyledon development3.12E-02
161GO:0009749: response to glucose3.12E-02
162GO:0042744: hydrogen peroxide catabolic process3.35E-02
163GO:0009790: embryo development3.43E-02
164GO:0010583: response to cyclopentenone3.44E-02
165GO:0032502: developmental process3.44E-02
166GO:0030163: protein catabolic process3.60E-02
167GO:0008152: metabolic process3.67E-02
168GO:0016310: phosphorylation3.68E-02
169GO:0009828: plant-type cell wall loosening3.76E-02
170GO:0006310: DNA recombination3.76E-02
171GO:0006974: cellular response to DNA damage stimulus4.61E-02
172GO:0010411: xyloglucan metabolic process4.78E-02
173GO:0016311: dephosphorylation4.96E-02
RankGO TermAdjusted P value
1GO:0005363: maltose transmembrane transporter activity0.00E+00
2GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
3GO:0010303: limit dextrinase activity0.00E+00
4GO:0004134: 4-alpha-glucanotransferase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
7GO:0051060: pullulanase activity0.00E+00
8GO:0004822: isoleucine-tRNA ligase activity0.00E+00
9GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
10GO:0051738: xanthophyll binding0.00E+00
11GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
12GO:0019843: rRNA binding6.83E-18
13GO:0003735: structural constituent of ribosome3.70E-12
14GO:0008266: poly(U) RNA binding2.44E-06
15GO:0051920: peroxiredoxin activity4.04E-06
16GO:0016209: antioxidant activity9.78E-06
17GO:0004375: glycine dehydrogenase (decarboxylating) activity3.81E-05
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.83E-05
19GO:0004130: cytochrome-c peroxidase activity1.54E-04
20GO:0050521: alpha-glucan, water dikinase activity3.27E-04
21GO:0008184: glycogen phosphorylase activity3.27E-04
22GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.27E-04
23GO:0004856: xylulokinase activity3.27E-04
24GO:0009496: plastoquinol--plastocyanin reductase activity3.27E-04
25GO:0004645: phosphorylase activity3.27E-04
26GO:0000828: inositol hexakisphosphate kinase activity3.27E-04
27GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.27E-04
28GO:0005534: galactose binding3.27E-04
29GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.27E-04
30GO:0019203: carbohydrate phosphatase activity3.27E-04
31GO:0008158: hedgehog receptor activity3.27E-04
32GO:0004853: uroporphyrinogen decarboxylase activity3.27E-04
33GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.27E-04
34GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.27E-04
35GO:0000829: inositol heptakisphosphate kinase activity3.27E-04
36GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.27E-04
37GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.13E-04
38GO:0018708: thiol S-methyltransferase activity7.13E-04
39GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.13E-04
40GO:0008967: phosphoglycolate phosphatase activity7.13E-04
41GO:0004618: phosphoglycerate kinase activity7.13E-04
42GO:0010297: heteropolysaccharide binding7.13E-04
43GO:0033201: alpha-1,4-glucan synthase activity7.13E-04
44GO:0004750: ribulose-phosphate 3-epimerase activity7.13E-04
45GO:0004222: metalloendopeptidase activity1.15E-03
46GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.16E-03
47GO:0004373: glycogen (starch) synthase activity1.16E-03
48GO:0005504: fatty acid binding1.16E-03
49GO:0017150: tRNA dihydrouridine synthase activity1.16E-03
50GO:0050734: hydroxycinnamoyltransferase activity1.16E-03
51GO:0002161: aminoacyl-tRNA editing activity1.16E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.16E-03
53GO:0017108: 5'-flap endonuclease activity1.16E-03
54GO:0004075: biotin carboxylase activity1.16E-03
55GO:0045174: glutathione dehydrogenase (ascorbate) activity1.16E-03
56GO:0030267: glyoxylate reductase (NADP) activity1.16E-03
57GO:0070402: NADPH binding1.16E-03
58GO:0004324: ferredoxin-NADP+ reductase activity1.16E-03
59GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.45E-03
60GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.45E-03
61GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.45E-03
62GO:0005528: FK506 binding1.61E-03
63GO:0016149: translation release factor activity, codon specific1.66E-03
64GO:0004550: nucleoside diphosphate kinase activity1.66E-03
65GO:0043023: ribosomal large subunit binding1.66E-03
66GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.23E-03
67GO:0045430: chalcone isomerase activity2.23E-03
68GO:0009011: starch synthase activity2.23E-03
69GO:0008878: glucose-1-phosphate adenylyltransferase activity2.23E-03
70GO:0004845: uracil phosphoribosyltransferase activity2.23E-03
71GO:0019104: DNA N-glycosylase activity2.23E-03
72GO:0004372: glycine hydroxymethyltransferase activity2.84E-03
73GO:0003959: NADPH dehydrogenase activity2.84E-03
74GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.84E-03
75GO:0016773: phosphotransferase activity, alcohol group as acceptor2.84E-03
76GO:0003989: acetyl-CoA carboxylase activity2.84E-03
77GO:0050662: coenzyme binding3.43E-03
78GO:0004601: peroxidase activity3.44E-03
79GO:0004556: alpha-amylase activity3.51E-03
80GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.51E-03
81GO:0016688: L-ascorbate peroxidase activity3.51E-03
82GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.51E-03
83GO:2001070: starch binding3.51E-03
84GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.23E-03
85GO:0004849: uridine kinase activity4.23E-03
86GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.23E-03
87GO:0004602: glutathione peroxidase activity4.23E-03
88GO:0004620: phospholipase activity4.99E-03
89GO:0005200: structural constituent of cytoskeleton5.07E-03
90GO:0004034: aldose 1-epimerase activity5.80E-03
91GO:0015288: porin activity5.80E-03
92GO:0016168: chlorophyll binding6.03E-03
93GO:0015078: hydrogen ion transmembrane transporter activity6.65E-03
94GO:0008236: serine-type peptidase activity7.07E-03
95GO:0008138: protein tyrosine/serine/threonine phosphatase activity7.54E-03
96GO:0003747: translation release factor activity7.54E-03
97GO:0005384: manganese ion transmembrane transporter activity8.48E-03
98GO:0015386: potassium:proton antiporter activity1.05E-02
99GO:0047372: acylglycerol lipase activity1.05E-02
100GO:0000049: tRNA binding1.15E-02
101GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.18E-02
102GO:0004565: beta-galactosidase activity1.26E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity1.26E-02
104GO:0015266: protein channel activity1.26E-02
105GO:0004089: carbonate dehydratase activity1.26E-02
106GO:0015095: magnesium ion transmembrane transporter activity1.26E-02
107GO:0031072: heat shock protein binding1.26E-02
108GO:0031409: pigment binding1.61E-02
109GO:0015079: potassium ion transmembrane transporter activity1.86E-02
110GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.02E-02
111GO:0008810: cellulase activity2.25E-02
112GO:0016760: cellulose synthase (UDP-forming) activity2.25E-02
113GO:0022891: substrate-specific transmembrane transporter activity2.25E-02
114GO:0016746: transferase activity, transferring acyl groups2.42E-02
115GO:0004812: aminoacyl-tRNA ligase activity2.53E-02
116GO:0016740: transferase activity2.75E-02
117GO:0001085: RNA polymerase II transcription factor binding2.82E-02
118GO:0005355: glucose transmembrane transporter activity2.97E-02
119GO:0016853: isomerase activity2.97E-02
120GO:0016491: oxidoreductase activity3.20E-02
121GO:0003924: GTPase activity3.25E-02
122GO:0004252: serine-type endopeptidase activity3.27E-02
123GO:0030170: pyridoxal phosphate binding3.27E-02
124GO:0016762: xyloglucan:xyloglucosyl transferase activity3.28E-02
125GO:0048038: quinone binding3.28E-02
126GO:0004518: nuclease activity3.44E-02
127GO:0051015: actin filament binding3.60E-02
128GO:0003684: damaged DNA binding3.76E-02
129GO:0016791: phosphatase activity3.76E-02
130GO:0016759: cellulose synthase activity3.76E-02
131GO:0008237: metallopeptidase activity3.92E-02
132GO:0005525: GTP binding4.24E-02
133GO:0030247: polysaccharide binding4.78E-02
134GO:0016798: hydrolase activity, acting on glycosyl bonds4.78E-02
135GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.96E-02
RankGO TermAdjusted P value
1GO:0033557: Slx1-Slx4 complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0034426: etioplast membrane0.00E+00
4GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
5GO:0009507: chloroplast5.97E-64
6GO:0009570: chloroplast stroma6.07E-59
7GO:0009941: chloroplast envelope3.37E-56
8GO:0009534: chloroplast thylakoid4.15E-38
9GO:0009579: thylakoid4.15E-35
10GO:0009535: chloroplast thylakoid membrane5.80E-31
11GO:0031977: thylakoid lumen3.05E-14
12GO:0009543: chloroplast thylakoid lumen2.74E-13
13GO:0005840: ribosome1.78E-12
14GO:0010287: plastoglobule7.31E-08
15GO:0010319: stromule9.57E-08
16GO:0048046: apoplast1.06E-06
17GO:0016020: membrane2.38E-06
18GO:0031357: integral component of chloroplast inner membrane4.84E-06
19GO:0009533: chloroplast stromal thylakoid6.48E-06
20GO:0005960: glycine cleavage complex3.81E-05
21GO:0009706: chloroplast inner membrane1.15E-04
22GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.27E-04
23GO:0009536: plastid3.29E-04
24GO:0009538: photosystem I reaction center3.44E-04
25GO:0009501: amyloplast3.44E-04
26GO:0009523: photosystem II4.19E-04
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.07E-04
28GO:0045298: tubulin complex5.07E-04
29GO:0009295: nucleoid6.32E-04
30GO:0030093: chloroplast photosystem I7.13E-04
31GO:0000311: plastid large ribosomal subunit9.18E-04
32GO:0009508: plastid chromosome1.04E-03
33GO:0030095: chloroplast photosystem II1.17E-03
34GO:0009517: PSII associated light-harvesting complex II2.23E-03
35GO:0009527: plastid outer membrane2.23E-03
36GO:0009512: cytochrome b6f complex2.84E-03
37GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.51E-03
38GO:0031969: chloroplast membrane4.77E-03
39GO:0022625: cytosolic large ribosomal subunit5.15E-03
40GO:0031305: integral component of mitochondrial inner membrane5.80E-03
41GO:0046930: pore complex6.65E-03
42GO:0005618: cell wall6.91E-03
43GO:0042644: chloroplast nucleoid7.54E-03
44GO:0005763: mitochondrial small ribosomal subunit7.54E-03
45GO:0015934: large ribosomal subunit8.61E-03
46GO:0000312: plastid small ribosomal subunit1.37E-02
47GO:0030076: light-harvesting complex1.49E-02
48GO:0009654: photosystem II oxygen evolving complex1.86E-02
49GO:0022626: cytosolic ribosome1.92E-02
50GO:0015935: small ribosomal subunit1.99E-02
51GO:0015629: actin cytoskeleton2.25E-02
52GO:0005744: mitochondrial inner membrane presequence translocase complex2.39E-02
53GO:0009522: photosystem I2.97E-02
54GO:0019898: extrinsic component of membrane3.12E-02
55GO:0071944: cell periphery3.60E-02
56GO:0005759: mitochondrial matrix3.69E-02
57GO:0030529: intracellular ribonucleoprotein complex4.26E-02
58GO:0005667: transcription factor complex4.61E-02
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Gene type



Gene DE type