Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G78290

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018293: protein-FAD linkage0.00E+00
2GO:0034553: mitochondrial respiratory chain complex II assembly0.00E+00
3GO:0032780: negative regulation of ATPase activity0.00E+00
4GO:0016487: farnesol metabolic process0.00E+00
5GO:0046292: formaldehyde metabolic process0.00E+00
6GO:0023052: signaling0.00E+00
7GO:0006721: terpenoid metabolic process0.00E+00
8GO:0006069: ethanol oxidation0.00E+00
9GO:0009236: cobalamin biosynthetic process0.00E+00
10GO:0006720: isoprenoid metabolic process0.00E+00
11GO:0006006: glucose metabolic process2.90E-05
12GO:0019509: L-methionine salvage from methylthioadenosine1.19E-04
13GO:0050790: regulation of catalytic activity1.57E-04
14GO:0051603: proteolysis involved in cellular protein catabolic process2.01E-04
15GO:0019354: siroheme biosynthetic process2.27E-04
16GO:0010265: SCF complex assembly2.27E-04
17GO:0015798: myo-inositol transport2.27E-04
18GO:0015996: chlorophyll catabolic process2.48E-04
19GO:0000103: sulfate assimilation4.18E-04
20GO:2000030: regulation of response to red or far red light5.05E-04
21GO:0043255: regulation of carbohydrate biosynthetic process5.05E-04
22GO:0030010: establishment of cell polarity5.05E-04
23GO:0019388: galactose catabolic process5.05E-04
24GO:0080026: response to indolebutyric acid5.05E-04
25GO:0019441: tryptophan catabolic process to kynurenine5.05E-04
26GO:0097054: L-glutamate biosynthetic process5.05E-04
27GO:0080183: response to photooxidative stress5.05E-04
28GO:0043100: pyrimidine nucleobase salvage5.05E-04
29GO:0006099: tricarboxylic acid cycle7.52E-04
30GO:1901562: response to paraquat8.21E-04
31GO:0015940: pantothenate biosynthetic process8.21E-04
32GO:0006760: folic acid-containing compound metabolic process8.21E-04
33GO:0010351: lithium ion transport8.21E-04
34GO:0006107: oxaloacetate metabolic process1.17E-03
35GO:0006537: glutamate biosynthetic process1.17E-03
36GO:0006516: glycoprotein catabolic process1.17E-03
37GO:1901332: negative regulation of lateral root development1.17E-03
38GO:0009590: detection of gravity1.17E-03
39GO:0080024: indolebutyric acid metabolic process1.17E-03
40GO:0006624: vacuolar protein processing1.17E-03
41GO:0016226: iron-sulfur cluster assembly1.27E-03
42GO:0006012: galactose metabolic process1.38E-03
43GO:0009826: unidimensional cell growth1.44E-03
44GO:0019676: ammonia assimilation cycle1.56E-03
45GO:0006221: pyrimidine nucleotide biosynthetic process1.56E-03
46GO:0032366: intracellular sterol transport1.56E-03
47GO:0044205: 'de novo' UMP biosynthetic process1.56E-03
48GO:0000003: reproduction1.56E-03
49GO:0034613: cellular protein localization1.56E-03
50GO:0006646: phosphatidylethanolamine biosynthetic process1.56E-03
51GO:0042391: regulation of membrane potential1.76E-03
52GO:0080022: primary root development1.76E-03
53GO:0018344: protein geranylgeranylation1.99E-03
54GO:0009697: salicylic acid biosynthetic process1.99E-03
55GO:0098719: sodium ion import across plasma membrane1.99E-03
56GO:0010236: plastoquinone biosynthetic process1.99E-03
57GO:0008654: phospholipid biosynthetic process2.18E-03
58GO:0055114: oxidation-reduction process2.23E-03
59GO:0006555: methionine metabolic process2.45E-03
60GO:0070814: hydrogen sulfide biosynthetic process2.45E-03
61GO:0003006: developmental process involved in reproduction2.45E-03
62GO:0009117: nucleotide metabolic process2.45E-03
63GO:0006121: mitochondrial electron transport, succinate to ubiquinone2.45E-03
64GO:0006508: proteolysis2.64E-03
65GO:1901001: negative regulation of response to salt stress2.94E-03
66GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.94E-03
67GO:0017148: negative regulation of translation2.94E-03
68GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process3.47E-03
69GO:0016042: lipid catabolic process3.67E-03
70GO:0005978: glycogen biosynthetic process4.02E-03
71GO:0030091: protein repair4.02E-03
72GO:0006506: GPI anchor biosynthetic process4.02E-03
73GO:0000028: ribosomal small subunit assembly4.02E-03
74GO:0048658: anther wall tapetum development4.02E-03
75GO:0008152: metabolic process4.45E-03
76GO:0009880: embryonic pattern specification4.60E-03
77GO:0010228: vegetative to reproductive phase transition of meristem4.69E-03
78GO:0048527: lateral root development5.06E-03
79GO:0080144: amino acid homeostasis5.22E-03
80GO:0005975: carbohydrate metabolic process5.28E-03
81GO:0009853: photorespiration5.54E-03
82GO:0034599: cellular response to oxidative stress5.79E-03
83GO:0042761: very long-chain fatty acid biosynthetic process5.85E-03
84GO:0051453: regulation of intracellular pH5.85E-03
85GO:0009970: cellular response to sulfate starvation6.51E-03
86GO:0006896: Golgi to vacuole transport6.51E-03
87GO:0052544: defense response by callose deposition in cell wall7.20E-03
88GO:0072593: reactive oxygen species metabolic process7.20E-03
89GO:0006879: cellular iron ion homeostasis7.20E-03
90GO:0048229: gametophyte development7.20E-03
91GO:0009735: response to cytokinin8.00E-03
92GO:0006094: gluconeogenesis8.66E-03
93GO:0006829: zinc II ion transport8.66E-03
94GO:0006807: nitrogen compound metabolic process8.66E-03
95GO:0009691: cytokinin biosynthetic process8.66E-03
96GO:0006108: malate metabolic process8.66E-03
97GO:0009555: pollen development9.16E-03
98GO:0048440: carpel development9.42E-03
99GO:0007034: vacuolar transport9.42E-03
100GO:0019853: L-ascorbic acid biosynthetic process1.02E-02
101GO:0010039: response to iron ion1.02E-02
102GO:0006071: glycerol metabolic process1.10E-02
103GO:0006096: glycolytic process1.14E-02
104GO:0048316: seed development1.18E-02
105GO:0009116: nucleoside metabolic process1.19E-02
106GO:0019953: sexual reproduction1.27E-02
107GO:0008299: isoprenoid biosynthetic process1.27E-02
108GO:0006886: intracellular protein transport1.33E-02
109GO:0061077: chaperone-mediated protein folding1.36E-02
110GO:0015992: proton transport1.36E-02
111GO:0035428: hexose transmembrane transport1.45E-02
112GO:0019748: secondary metabolic process1.45E-02
113GO:0001944: vasculature development1.54E-02
114GO:0015991: ATP hydrolysis coupled proton transport1.83E-02
115GO:0010051: xylem and phloem pattern formation1.83E-02
116GO:0006520: cellular amino acid metabolic process1.93E-02
117GO:0006662: glycerol ether metabolic process1.93E-02
118GO:0046323: glucose import1.93E-02
119GO:0015986: ATP synthesis coupled proton transport2.03E-02
120GO:0006814: sodium ion transport2.03E-02
121GO:0006623: protein targeting to vacuole2.14E-02
122GO:0019252: starch biosynthetic process2.14E-02
123GO:0055072: iron ion homeostasis2.14E-02
124GO:0010150: leaf senescence2.38E-02
125GO:0009651: response to salt stress2.43E-02
126GO:0010090: trichome morphogenesis2.46E-02
127GO:0006464: cellular protein modification process2.57E-02
128GO:0006914: autophagy2.57E-02
129GO:0009828: plant-type cell wall loosening2.57E-02
130GO:0010286: heat acclimation2.68E-02
131GO:0071805: potassium ion transmembrane transport2.68E-02
132GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.03E-02
133GO:0006906: vesicle fusion3.15E-02
134GO:0006950: response to stress3.27E-02
135GO:0009817: defense response to fungus, incompatible interaction3.52E-02
136GO:0008219: cell death3.52E-02
137GO:0048767: root hair elongation3.65E-02
138GO:0035556: intracellular signal transduction3.65E-02
139GO:0010311: lateral root formation3.65E-02
140GO:0006499: N-terminal protein myristoylation3.77E-02
141GO:0009407: toxin catabolic process3.77E-02
142GO:0006811: ion transport3.77E-02
143GO:0010043: response to zinc ion3.90E-02
144GO:0006970: response to osmotic stress3.96E-02
145GO:0030001: metal ion transport4.57E-02
146GO:0055085: transmembrane transport4.57E-02
147GO:0006631: fatty acid metabolic process4.71E-02
148GO:0006887: exocytosis4.71E-02
149GO:0016192: vesicle-mediated transport4.79E-02
RankGO TermAdjusted P value
1GO:0080007: S-nitrosoglutathione reductase activity0.00E+00
2GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
3GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity0.00E+00
4GO:0050152: omega-amidase activity0.00E+00
5GO:0009940: amino-terminal vacuolar sorting propeptide binding0.00E+00
6GO:0052671: geranylgeraniol kinase activity0.00E+00
7GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
8GO:0015205: nucleobase transmembrane transporter activity0.00E+00
9GO:0015930: glutamate synthase activity0.00E+00
10GO:0051266: sirohydrochlorin ferrochelatase activity0.00E+00
11GO:0051903: S-(hydroxymethyl)glutathione dehydrogenase activity0.00E+00
12GO:0004151: dihydroorotase activity0.00E+00
13GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity0.00E+00
14GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity0.00E+00
15GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
16GO:0047886: farnesol dehydrogenase activity0.00E+00
17GO:0016852: sirohydrochlorin cobaltochelatase activity0.00E+00
18GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
19GO:0042030: ATPase inhibitor activity0.00E+00
20GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity0.00E+00
21GO:0052670: geraniol kinase activity0.00E+00
22GO:0052668: farnesol kinase activity0.00E+00
23GO:0008137: NADH dehydrogenase (ubiquinone) activity1.23E-05
24GO:0008106: alcohol dehydrogenase (NADP+) activity2.00E-05
25GO:0005261: cation channel activity1.19E-04
26GO:0004034: aldose 1-epimerase activity2.00E-04
27GO:0004347: glucose-6-phosphate isomerase activity2.27E-04
28GO:0004560: alpha-L-fucosidase activity2.27E-04
29GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity2.27E-04
30GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity2.27E-04
31GO:0016780: phosphotransferase activity, for other substituted phosphate groups2.27E-04
32GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity2.27E-04
33GO:0080047: GDP-L-galactose phosphorylase activity2.27E-04
34GO:0010209: vacuolar sorting signal binding2.27E-04
35GO:0010313: phytochrome binding2.27E-04
36GO:0004307: ethanolaminephosphotransferase activity2.27E-04
37GO:0102293: pheophytinase b activity2.27E-04
38GO:0008782: adenosylhomocysteine nucleosidase activity2.27E-04
39GO:0016041: glutamate synthase (ferredoxin) activity2.27E-04
40GO:0008930: methylthioadenosine nucleosidase activity2.27E-04
41GO:0080048: GDP-D-glucose phosphorylase activity2.27E-04
42GO:0004197: cysteine-type endopeptidase activity2.49E-04
43GO:0016787: hydrolase activity3.47E-04
44GO:0050347: trans-octaprenyltranstransferase activity5.05E-04
45GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity5.05E-04
46GO:0030572: phosphatidyltransferase activity5.05E-04
47GO:0004142: diacylglycerol cholinephosphotransferase activity5.05E-04
48GO:0004061: arylformamidase activity5.05E-04
49GO:0004614: phosphoglucomutase activity5.05E-04
50GO:0051980: iron-nicotianamine transmembrane transporter activity5.05E-04
51GO:0005366: myo-inositol:proton symporter activity5.05E-04
52GO:0047746: chlorophyllase activity5.05E-04
53GO:0050897: cobalt ion binding6.34E-04
54GO:0030552: cAMP binding7.89E-04
55GO:0030553: cGMP binding7.89E-04
56GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity8.21E-04
57GO:0004557: alpha-galactosidase activity8.21E-04
58GO:0004663: Rab geranylgeranyltransferase activity8.21E-04
59GO:0004781: sulfate adenylyltransferase (ATP) activity8.21E-04
60GO:0052692: raffinose alpha-galactosidase activity8.21E-04
61GO:0051539: 4 iron, 4 sulfur cluster binding8.38E-04
62GO:0051536: iron-sulfur cluster binding9.67E-04
63GO:0004185: serine-type carboxypeptidase activity9.77E-04
64GO:0005216: ion channel activity1.06E-03
65GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.17E-03
66GO:0048027: mRNA 5'-UTR binding1.17E-03
67GO:0035529: NADH pyrophosphatase activity1.17E-03
68GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.56E-03
69GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.56E-03
70GO:0016788: hydrolase activity, acting on ester bonds1.57E-03
71GO:0008234: cysteine-type peptidase activity1.61E-03
72GO:0030551: cyclic nucleotide binding1.76E-03
73GO:0005249: voltage-gated potassium channel activity1.76E-03
74GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.82E-03
75GO:0008177: succinate dehydrogenase (ubiquinone) activity1.99E-03
76GO:0051538: 3 iron, 4 sulfur cluster binding1.99E-03
77GO:0016853: isomerase activity2.03E-03
78GO:0080046: quercetin 4'-O-glucosyltransferase activity2.45E-03
79GO:0004605: phosphatidate cytidylyltransferase activity2.45E-03
80GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity2.45E-03
81GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity2.45E-03
82GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity2.45E-03
83GO:0015081: sodium ion transmembrane transporter activity2.45E-03
84GO:0052689: carboxylic ester hydrolase activity2.47E-03
85GO:0070300: phosphatidic acid binding2.94E-03
86GO:0008320: protein transmembrane transporter activity3.47E-03
87GO:0005085: guanyl-nucleotide exchange factor activity3.47E-03
88GO:0016491: oxidoreductase activity3.99E-03
89GO:0004869: cysteine-type endopeptidase inhibitor activity4.02E-03
90GO:0008236: serine-type peptidase activity4.16E-03
91GO:0005507: copper ion binding4.33E-03
92GO:0015078: hydrogen ion transmembrane transporter activity4.60E-03
93GO:0008889: glycerophosphodiester phosphodiesterase activity5.22E-03
94GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.22E-03
95GO:0045309: protein phosphorylated amino acid binding5.85E-03
96GO:0015386: potassium:proton antiporter activity7.20E-03
97GO:0004129: cytochrome-c oxidase activity7.20E-03
98GO:0019904: protein domain specific binding7.20E-03
99GO:0046961: proton-transporting ATPase activity, rotational mechanism7.20E-03
100GO:0015198: oligopeptide transporter activity7.92E-03
101GO:0004022: alcohol dehydrogenase (NAD) activity8.66E-03
102GO:0004089: carbonate dehydratase activity8.66E-03
103GO:0004175: endopeptidase activity9.42E-03
104GO:0016298: lipase activity9.98E-03
105GO:0005528: FK506 binding1.19E-02
106GO:0008324: cation transmembrane transporter activity1.27E-02
107GO:0047134: protein-disulfide reductase activity1.73E-02
108GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.93E-02
109GO:0004527: exonuclease activity1.93E-02
110GO:0046873: metal ion transmembrane transporter activity1.93E-02
111GO:0004791: thioredoxin-disulfide reductase activity2.03E-02
112GO:0005355: glucose transmembrane transporter activity2.03E-02
113GO:0050662: coenzyme binding2.03E-02
114GO:0004518: nuclease activity2.35E-02
115GO:0015385: sodium:proton antiporter activity2.46E-02
116GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.46E-02
117GO:0016597: amino acid binding2.80E-02
118GO:0003824: catalytic activity3.02E-02
119GO:0009931: calcium-dependent protein serine/threonine kinase activity3.15E-02
120GO:0030247: polysaccharide binding3.27E-02
121GO:0004683: calmodulin-dependent protein kinase activity3.27E-02
122GO:0008168: methyltransferase activity3.55E-02
123GO:0015238: drug transmembrane transporter activity3.65E-02
124GO:0000149: SNARE binding4.43E-02
125GO:0050661: NADP binding4.57E-02
126GO:0004672: protein kinase activity4.60E-02
127GO:0004364: glutathione transferase activity4.85E-02
128GO:0005484: SNAP receptor activity4.98E-02
RankGO TermAdjusted P value
1GO:0000274: mitochondrial proton-transporting ATP synthase, stator stalk0.00E+00
2GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain0.00E+00
3GO:0005773: vacuole5.64E-08
4GO:0005747: mitochondrial respiratory chain complex I6.31E-08
5GO:0005829: cytosol9.24E-07
6GO:0005783: endoplasmic reticulum9.72E-06
7GO:0005764: lysosome3.55E-05
8GO:0045273: respiratory chain complex II2.00E-04
9GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.00E-04
10GO:0031969: chloroplast membrane4.27E-04
11GO:0009507: chloroplast6.55E-04
12GO:0005753: mitochondrial proton-transporting ATP synthase complex7.89E-04
13GO:0009536: plastid1.02E-03
14GO:0045271: respiratory chain complex I1.06E-03
15GO:0000323: lytic vacuole1.17E-03
16GO:0000276: mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)1.17E-03
17GO:0005968: Rab-protein geranylgeranyltransferase complex1.17E-03
18GO:0009526: plastid envelope1.56E-03
19GO:0005886: plasma membrane1.70E-03
20GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)2.45E-03
21GO:0032580: Golgi cisterna membrane2.82E-03
22GO:0010319: stromule2.99E-03
23GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.47E-03
24GO:0009501: amyloplast4.02E-03
25GO:0000421: autophagosome membrane4.02E-03
26GO:0031901: early endosome membrane5.22E-03
27GO:0005763: mitochondrial small ribosomal subunit5.22E-03
28GO:0030665: clathrin-coated vesicle membrane5.85E-03
29GO:0009570: chloroplast stroma6.29E-03
30GO:0017119: Golgi transport complex6.51E-03
31GO:0031966: mitochondrial membrane8.97E-03
32GO:0005774: vacuolar membrane9.72E-03
33GO:0005758: mitochondrial intermembrane space1.19E-02
34GO:0070469: respiratory chain1.27E-02
35GO:0031410: cytoplasmic vesicle1.45E-02
36GO:0016021: integral component of membrane1.49E-02
37GO:0005770: late endosome1.93E-02
38GO:0005887: integral component of plasma membrane2.45E-02
39GO:0005615: extracellular space2.67E-02
40GO:0005739: mitochondrion3.23E-02
41GO:0005618: cell wall3.31E-02
42GO:0000325: plant-type vacuole3.90E-02
43GO:0005777: peroxisome4.05E-02
44GO:0031201: SNARE complex4.71E-02
45GO:0031902: late endosome membrane4.71E-02
46GO:0005789: endoplasmic reticulum membrane4.87E-02
47GO:0090406: pollen tube4.98E-02
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Gene type



Gene DE type