Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G78240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071289: cellular response to nickel ion0.00E+00
2GO:2000630: positive regulation of miRNA metabolic process0.00E+00
3GO:1904526: regulation of microtubule binding0.00E+00
4GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
5GO:0042353: fucose biosynthetic process0.00E+00
6GO:0007141: male meiosis I0.00E+00
7GO:2000636: positive regulation of primary miRNA processing0.00E+00
8GO:0010046: response to mycotoxin0.00E+00
9GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
10GO:1905499: trichome papilla formation0.00E+00
11GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
12GO:0019593: mannitol biosynthetic process0.00E+00
13GO:0010200: response to chitin2.16E-08
14GO:0042335: cuticle development2.82E-07
15GO:0009873: ethylene-activated signaling pathway4.48E-06
16GO:0006633: fatty acid biosynthetic process7.27E-06
17GO:0009611: response to wounding2.04E-05
18GO:0010025: wax biosynthetic process2.75E-05
19GO:0009409: response to cold7.40E-05
20GO:2000280: regulation of root development1.07E-04
21GO:0045489: pectin biosynthetic process1.30E-04
22GO:0009737: response to abscisic acid1.52E-04
23GO:0006631: fatty acid metabolic process1.65E-04
24GO:0000038: very long-chain fatty acid metabolic process1.69E-04
25GO:0006665: sphingolipid metabolic process2.84E-04
26GO:0010143: cutin biosynthetic process2.93E-04
27GO:0006468: protein phosphorylation3.75E-04
28GO:0035435: phosphate ion transmembrane transport3.97E-04
29GO:0045926: negative regulation of growth5.28E-04
30GO:0051180: vitamin transport6.01E-04
31GO:0009609: response to symbiotic bacterium6.01E-04
32GO:0030974: thiamine pyrophosphate transport6.01E-04
33GO:0009865: pollen tube adhesion6.01E-04
34GO:0046938: phytochelatin biosynthetic process6.01E-04
35GO:0050691: regulation of defense response to virus by host6.01E-04
36GO:0006680: glucosylceramide catabolic process6.01E-04
37GO:0034620: cellular response to unfolded protein6.01E-04
38GO:0080051: cutin transport6.01E-04
39GO:0033481: galacturonate biosynthetic process6.01E-04
40GO:0090421: embryonic meristem initiation6.01E-04
41GO:0034472: snRNA 3'-end processing6.01E-04
42GO:0006811: ion transport6.30E-04
43GO:0042545: cell wall modification6.32E-04
44GO:0050829: defense response to Gram-negative bacterium6.75E-04
45GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.75E-04
46GO:2000070: regulation of response to water deprivation8.40E-04
47GO:0070417: cellular response to cold9.09E-04
48GO:0098656: anion transmembrane transport1.22E-03
49GO:1901679: nucleotide transmembrane transport1.29E-03
50GO:0015786: UDP-glucose transport1.29E-03
51GO:2000030: regulation of response to red or far red light1.29E-03
52GO:0015908: fatty acid transport1.29E-03
53GO:0007130: synaptonemal complex assembly1.29E-03
54GO:0006898: receptor-mediated endocytosis1.29E-03
55GO:0015893: drug transport1.29E-03
56GO:0010507: negative regulation of autophagy1.29E-03
57GO:0015709: thiosulfate transport1.29E-03
58GO:0071422: succinate transmembrane transport1.29E-03
59GO:0031407: oxylipin metabolic process1.29E-03
60GO:0042754: negative regulation of circadian rhythm1.29E-03
61GO:0042761: very long-chain fatty acid biosynthetic process1.44E-03
62GO:0045490: pectin catabolic process1.75E-03
63GO:0052544: defense response by callose deposition in cell wall1.95E-03
64GO:0030148: sphingolipid biosynthetic process1.95E-03
65GO:0009414: response to water deprivation2.08E-03
66GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.13E-03
67GO:0080168: abscisic acid transport2.13E-03
68GO:0051211: anisotropic cell growth2.13E-03
69GO:0042344: indole glucosinolate catabolic process2.13E-03
70GO:0016045: detection of bacterium2.13E-03
71GO:0010359: regulation of anion channel activity2.13E-03
72GO:0010288: response to lead ion2.13E-03
73GO:0080121: AMP transport2.13E-03
74GO:0090630: activation of GTPase activity2.13E-03
75GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.13E-03
76GO:0015783: GDP-fucose transport2.13E-03
77GO:0010325: raffinose family oligosaccharide biosynthetic process2.13E-03
78GO:0018107: peptidyl-threonine phosphorylation2.54E-03
79GO:0015729: oxaloacetate transport3.09E-03
80GO:0033014: tetrapyrrole biosynthetic process3.09E-03
81GO:0072334: UDP-galactose transmembrane transport3.09E-03
82GO:0030100: regulation of endocytosis3.09E-03
83GO:0015700: arsenite transport3.09E-03
84GO:0006624: vacuolar protein processing3.09E-03
85GO:0010371: regulation of gibberellin biosynthetic process3.09E-03
86GO:0009624: response to nematode3.11E-03
87GO:0009751: response to salicylic acid3.22E-03
88GO:0070588: calcium ion transmembrane transport3.22E-03
89GO:0030244: cellulose biosynthetic process3.25E-03
90GO:0009833: plant-type primary cell wall biogenesis3.60E-03
91GO:0009631: cold acclimation3.92E-03
92GO:0009863: salicylic acid mediated signaling pathway3.99E-03
93GO:0046345: abscisic acid catabolic process4.17E-03
94GO:0071585: detoxification of cadmium ion4.17E-03
95GO:0006536: glutamate metabolic process4.17E-03
96GO:0022622: root system development4.17E-03
97GO:0042991: transcription factor import into nucleus4.17E-03
98GO:0006552: leucine catabolic process4.17E-03
99GO:1902347: response to strigolactone4.17E-03
100GO:0015867: ATP transport4.17E-03
101GO:0009694: jasmonic acid metabolic process4.17E-03
102GO:0010222: stem vascular tissue pattern formation4.17E-03
103GO:0006970: response to osmotic stress4.33E-03
104GO:0016051: carbohydrate biosynthetic process4.41E-03
105GO:0031408: oxylipin biosynthetic process4.85E-03
106GO:0006839: mitochondrial transport5.21E-03
107GO:0009247: glycolipid biosynthetic process5.35E-03
108GO:0006873: cellular ion homeostasis5.35E-03
109GO:0048359: mucilage metabolic process involved in seed coat development5.35E-03
110GO:0071423: malate transmembrane transport5.35E-03
111GO:0048497: maintenance of floral organ identity5.35E-03
112GO:0009790: embryo development5.57E-03
113GO:0001944: vasculature development5.81E-03
114GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.89E-03
115GO:0010091: trichome branching6.32E-03
116GO:0010256: endomembrane system organization6.64E-03
117GO:0048232: male gamete generation6.64E-03
118GO:0009913: epidermal cell differentiation6.64E-03
119GO:0047484: regulation of response to osmotic stress6.64E-03
120GO:1900425: negative regulation of defense response to bacterium6.64E-03
121GO:0006574: valine catabolic process6.64E-03
122GO:0006751: glutathione catabolic process6.64E-03
123GO:0015866: ADP transport6.64E-03
124GO:0042631: cellular response to water deprivation7.42E-03
125GO:0006355: regulation of transcription, DNA-templated7.78E-03
126GO:0048868: pollen tube development8.01E-03
127GO:1901001: negative regulation of response to salt stress8.02E-03
128GO:0009082: branched-chain amino acid biosynthetic process8.02E-03
129GO:0098655: cation transmembrane transport8.02E-03
130GO:0009861: jasmonic acid and ethylene-dependent systemic resistance8.02E-03
131GO:0010555: response to mannitol8.02E-03
132GO:0042538: hyperosmotic salinity response8.17E-03
133GO:0007166: cell surface receptor signaling pathway8.83E-03
134GO:0006351: transcription, DNA-templated9.29E-03
135GO:0006955: immune response9.51E-03
136GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway9.51E-03
137GO:0030497: fatty acid elongation9.51E-03
138GO:0008272: sulfate transport9.51E-03
139GO:1902074: response to salt9.51E-03
140GO:0032880: regulation of protein localization9.51E-03
141GO:0006401: RNA catabolic process9.51E-03
142GO:0009610: response to symbiotic fungus9.51E-03
143GO:0000302: response to reactive oxygen species9.92E-03
144GO:0010193: response to ozone9.92E-03
145GO:0008610: lipid biosynthetic process1.11E-02
146GO:0009819: drought recovery1.11E-02
147GO:0019375: galactolipid biosynthetic process1.11E-02
148GO:0009415: response to water1.11E-02
149GO:1900150: regulation of defense response to fungus1.11E-02
150GO:0019760: glucosinolate metabolic process1.20E-02
151GO:0009699: phenylpropanoid biosynthetic process1.27E-02
152GO:0009880: embryonic pattern specification1.27E-02
153GO:0009827: plant-type cell wall modification1.27E-02
154GO:0010345: suberin biosynthetic process1.45E-02
155GO:0046685: response to arsenic-containing substance1.45E-02
156GO:0090305: nucleic acid phosphodiester bond hydrolysis1.45E-02
157GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.45E-02
158GO:0006098: pentose-phosphate shunt1.45E-02
159GO:0006783: heme biosynthetic process1.45E-02
160GO:0001708: cell fate specification1.45E-02
161GO:0015780: nucleotide-sugar transport1.45E-02
162GO:0010029: regulation of seed germination1.53E-02
163GO:0050832: defense response to fungus1.55E-02
164GO:0071555: cell wall organization1.56E-02
165GO:0006779: porphyrin-containing compound biosynthetic process1.63E-02
166GO:0048268: clathrin coat assembly1.63E-02
167GO:0007346: regulation of mitotic cell cycle1.63E-02
168GO:0000398: mRNA splicing, via spliceosome1.69E-02
169GO:0055062: phosphate ion homeostasis1.82E-02
170GO:0006782: protoporphyrinogen IX biosynthetic process1.82E-02
171GO:0051026: chiasma assembly1.82E-02
172GO:0019538: protein metabolic process1.82E-02
173GO:0006952: defense response1.96E-02
174GO:0010015: root morphogenesis2.02E-02
175GO:0008285: negative regulation of cell proliferation2.02E-02
176GO:0016024: CDP-diacylglycerol biosynthetic process2.22E-02
177GO:0010105: negative regulation of ethylene-activated signaling pathway2.22E-02
178GO:0071365: cellular response to auxin stimulus2.22E-02
179GO:0000266: mitochondrial fission2.22E-02
180GO:0005986: sucrose biosynthetic process2.44E-02
181GO:0010588: cotyledon vascular tissue pattern formation2.44E-02
182GO:2000012: regulation of auxin polar transport2.44E-02
183GO:0050826: response to freezing2.44E-02
184GO:0045892: negative regulation of transcription, DNA-templated2.59E-02
185GO:0048467: gynoecium development2.66E-02
186GO:0034605: cellular response to heat2.66E-02
187GO:0002237: response to molecule of bacterial origin2.66E-02
188GO:0007623: circadian rhythm2.81E-02
189GO:0006897: endocytosis2.85E-02
190GO:0009969: xyloglucan biosynthetic process2.88E-02
191GO:0009225: nucleotide-sugar metabolic process2.88E-02
192GO:0080188: RNA-directed DNA methylation2.88E-02
193GO:0071732: cellular response to nitric oxide2.88E-02
194GO:0009416: response to light stimulus2.92E-02
195GO:0051707: response to other organism3.09E-02
196GO:0009640: photomorphogenesis3.09E-02
197GO:0006636: unsaturated fatty acid biosynthetic process3.11E-02
198GO:0006470: protein dephosphorylation3.32E-02
199GO:0009644: response to high light intensity3.34E-02
200GO:2000377: regulation of reactive oxygen species metabolic process3.35E-02
201GO:0010468: regulation of gene expression3.50E-02
202GO:0009695: jasmonic acid biosynthetic process3.60E-02
203GO:0009753: response to jasmonic acid3.80E-02
204GO:0009269: response to desiccation3.85E-02
205GO:0051321: meiotic cell cycle3.85E-02
206GO:0016998: cell wall macromolecule catabolic process3.85E-02
207GO:0010431: seed maturation3.85E-02
208GO:0006979: response to oxidative stress3.94E-02
209GO:0030245: cellulose catabolic process4.10E-02
210GO:0007131: reciprocal meiotic recombination4.10E-02
211GO:0030433: ubiquitin-dependent ERAD pathway4.10E-02
212GO:0031348: negative regulation of defense response4.10E-02
213GO:0071456: cellular response to hypoxia4.10E-02
214GO:0009809: lignin biosynthetic process4.16E-02
215GO:0006364: rRNA processing4.16E-02
216GO:0055085: transmembrane transport4.33E-02
217GO:0071369: cellular response to ethylene stimulus4.36E-02
218GO:0016310: phosphorylation4.52E-02
219GO:0010584: pollen exine formation4.63E-02
220GO:0048443: stamen development4.63E-02
221GO:0010089: xylem development4.63E-02
222GO:0008284: positive regulation of cell proliferation4.90E-02
RankGO TermAdjusted P value
1GO:0008419: RNA lariat debranching enzyme activity0.00E+00
2GO:0052631: sphingolipid delta-8 desaturase activity0.00E+00
3GO:0070566: adenylyltransferase activity0.00E+00
4GO:0017048: Rho GTPase binding0.00E+00
5GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
6GO:0080123: jasmonate-amino synthetase activity0.00E+00
7GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
8GO:0009922: fatty acid elongase activity1.64E-10
9GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.36E-08
10GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.36E-08
11GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.36E-08
12GO:0070330: aromatase activity2.04E-07
13GO:0018685: alkane 1-monooxygenase activity6.04E-06
14GO:0016629: 12-oxophytodienoate reductase activity1.57E-05
15GO:0043565: sequence-specific DNA binding3.24E-04
16GO:0016301: kinase activity3.80E-04
17GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.97E-04
18GO:0045330: aspartyl esterase activity4.23E-04
19GO:0030599: pectinesterase activity5.99E-04
20GO:0090422: thiamine pyrophosphate transporter activity6.01E-04
21GO:0046870: cadmium ion binding6.01E-04
22GO:0004348: glucosylceramidase activity6.01E-04
23GO:0071992: phytochelatin transmembrane transporter activity6.01E-04
24GO:0015446: ATPase-coupled arsenite transmembrane transporter activity6.01E-04
25GO:0015245: fatty acid transporter activity6.01E-04
26GO:0090440: abscisic acid transporter activity6.01E-04
27GO:0031957: very long-chain fatty acid-CoA ligase activity6.01E-04
28GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity6.60E-04
29GO:0016621: cinnamoyl-CoA reductase activity6.75E-04
30GO:0016746: transferase activity, transferring acyl groups7.03E-04
31GO:0044212: transcription regulatory region DNA binding8.03E-04
32GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.29E-03
33GO:1901677: phosphate transmembrane transporter activity1.29E-03
34GO:0015117: thiosulfate transmembrane transporter activity1.29E-03
35GO:0004103: choline kinase activity1.29E-03
36GO:0008883: glutamyl-tRNA reductase activity1.29E-03
37GO:0001047: core promoter binding1.29E-03
38GO:0042389: omega-3 fatty acid desaturase activity1.29E-03
39GO:0017040: ceramidase activity1.29E-03
40GO:0003839: gamma-glutamylcyclotransferase activity1.29E-03
41GO:0004674: protein serine/threonine kinase activity1.43E-03
42GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.55E-03
43GO:0015297: antiporter activity1.61E-03
44GO:0047274: galactinol-sucrose galactosyltransferase activity2.13E-03
45GO:0005310: dicarboxylic acid transmembrane transporter activity2.13E-03
46GO:0010295: (+)-abscisic acid 8'-hydroxylase activity2.13E-03
47GO:0015141: succinate transmembrane transporter activity2.13E-03
48GO:0004383: guanylate cyclase activity2.13E-03
49GO:0005457: GDP-fucose transmembrane transporter activity2.13E-03
50GO:0008083: growth factor activity2.87E-03
51GO:0001653: peptide receptor activity3.09E-03
52GO:0015131: oxaloacetate transmembrane transporter activity3.09E-03
53GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity3.09E-03
54GO:0035250: UDP-galactosyltransferase activity3.09E-03
55GO:0003883: CTP synthase activity3.09E-03
56GO:0005460: UDP-glucose transmembrane transporter activity3.09E-03
57GO:0005432: calcium:sodium antiporter activity3.09E-03
58GO:0052656: L-isoleucine transaminase activity3.09E-03
59GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity3.09E-03
60GO:0052654: L-leucine transaminase activity3.09E-03
61GO:0004351: glutamate decarboxylase activity3.09E-03
62GO:0052655: L-valine transaminase activity3.09E-03
63GO:0004084: branched-chain-amino-acid transaminase activity4.17E-03
64GO:0050378: UDP-glucuronate 4-epimerase activity4.17E-03
65GO:0003700: transcription factor activity, sequence-specific DNA binding4.98E-03
66GO:0005459: UDP-galactose transmembrane transporter activity5.35E-03
67GO:0080122: AMP transmembrane transporter activity5.35E-03
68GO:0070696: transmembrane receptor protein serine/threonine kinase binding5.35E-03
69GO:0008514: organic anion transmembrane transporter activity6.32E-03
70GO:0004366: glycerol-3-phosphate O-acyltransferase activity6.64E-03
71GO:0102391: decanoate--CoA ligase activity8.02E-03
72GO:0005347: ATP transmembrane transporter activity8.02E-03
73GO:0051020: GTPase binding8.02E-03
74GO:0015217: ADP transmembrane transporter activity8.02E-03
75GO:0005516: calmodulin binding8.32E-03
76GO:0010181: FMN binding8.61E-03
77GO:0019899: enzyme binding9.51E-03
78GO:0015140: malate transmembrane transporter activity9.51E-03
79GO:0004467: long-chain fatty acid-CoA ligase activity9.51E-03
80GO:0004143: diacylglycerol kinase activity9.51E-03
81GO:0015491: cation:cation antiporter activity1.11E-02
82GO:0005524: ATP binding1.15E-02
83GO:0016791: phosphatase activity1.20E-02
84GO:0008308: voltage-gated anion channel activity1.27E-02
85GO:0003951: NAD+ kinase activity1.27E-02
86GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.27E-02
87GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.45E-02
88GO:0003677: DNA binding1.75E-02
89GO:0016758: transferase activity, transferring hexosyl groups1.81E-02
90GO:0005545: 1-phosphatidylinositol binding1.82E-02
91GO:0004864: protein phosphatase inhibitor activity1.82E-02
92GO:0004713: protein tyrosine kinase activity1.82E-02
93GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.82E-02
94GO:0005096: GTPase activator activity1.98E-02
95GO:0015116: sulfate transmembrane transporter activity2.22E-02
96GO:0019888: protein phosphatase regulator activity2.44E-02
97GO:0015114: phosphate ion transmembrane transporter activity2.44E-02
98GO:0005388: calcium-transporting ATPase activity2.44E-02
99GO:0000175: 3'-5'-exoribonuclease activity2.44E-02
100GO:0005315: inorganic phosphate transmembrane transporter activity2.44E-02
101GO:0005262: calcium channel activity2.44E-02
102GO:0046910: pectinesterase inhibitor activity2.57E-02
103GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.66E-02
104GO:0008146: sulfotransferase activity2.88E-02
105GO:0004722: protein serine/threonine phosphatase activity2.89E-02
106GO:0004857: enzyme inhibitor activity3.35E-02
107GO:0051087: chaperone binding3.60E-02
108GO:0004540: ribonuclease activity3.85E-02
109GO:0004707: MAP kinase activity3.85E-02
110GO:0046872: metal ion binding3.90E-02
111GO:0016760: cellulose synthase (UDP-forming) activity4.36E-02
112GO:0031625: ubiquitin protein ligase binding4.60E-02
113GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.61E-02
114GO:0030246: carbohydrate binding4.75E-02
115GO:0005515: protein binding4.88E-02
116GO:0018024: histone-lysine N-methyltransferase activity4.90E-02
RankGO TermAdjusted P value
1GO:0032039: integrator complex0.00E+00
2GO:0046658: anchored component of plasma membrane3.30E-06
3GO:0016021: integral component of membrane1.12E-04
4GO:0005886: plasma membrane5.80E-04
5GO:0005768: endosome5.96E-04
6GO:0070382: exocytic vesicle6.01E-04
7GO:0009923: fatty acid elongase complex6.01E-04
8GO:0031357: integral component of chloroplast inner membrane1.29E-03
9GO:0042170: plastid membrane1.29E-03
10GO:0009897: external side of plasma membrane2.13E-03
11GO:0045177: apical part of cell3.09E-03
12GO:0031225: anchored component of membrane3.23E-03
13GO:0009505: plant-type cell wall3.96E-03
14GO:0000178: exosome (RNase complex)5.35E-03
15GO:0000793: condensed chromosome6.64E-03
16GO:0031463: Cul3-RING ubiquitin ligase complex6.64E-03
17GO:0030136: clathrin-coated vesicle6.86E-03
18GO:0030173: integral component of Golgi membrane8.02E-03
19GO:0005802: trans-Golgi network9.51E-03
20GO:0000794: condensed nuclear chromosome9.51E-03
21GO:0005743: mitochondrial inner membrane9.67E-03
22GO:0071944: cell periphery1.13E-02
23GO:0005794: Golgi apparatus1.19E-02
24GO:0032580: Golgi cisterna membrane1.20E-02
25GO:0005618: cell wall1.56E-02
26GO:0016604: nuclear body1.63E-02
27GO:0015030: Cajal body1.63E-02
28GO:0000159: protein phosphatase type 2A complex2.02E-02
29GO:0005938: cell cortex2.44E-02
30GO:0031902: late endosome membrane2.85E-02
31GO:0005622: intracellular3.06E-02
32GO:0005783: endoplasmic reticulum3.72E-02
33GO:0005905: clathrin-coated pit3.85E-02
34GO:0016020: membrane4.55E-02
35GO:0005681: spliceosomal complex4.90E-02
36GO:0000790: nuclear chromatin4.90E-02
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Gene type



Gene DE type