co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G77060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0018026: peptidyl-lysine monomethylation	1.59E-06
8	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.35E-05
9	GO:0010027: thylakoid membrane organization	1.40E-05
10	GO:0009658: chloroplast organization	1.54E-04
11	GO:0032544: plastid translation	1.78E-04
12	GO:0042371: vitamin K biosynthetic process	1.82E-04
13	GO:0043007: maintenance of rDNA	1.82E-04
14	GO:0000023: maltose metabolic process	1.82E-04
15	GO:0000025: maltose catabolic process	1.82E-04
16	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.82E-04
17	GO:0005980: glycogen catabolic process	1.82E-04
18	GO:0015995: chlorophyll biosynthetic process	3.07E-04
19	GO:0009773: photosynthetic electron transport in photosystem I	3.54E-04
20	GO:0005983: starch catabolic process	4.06E-04
21	GO:0005976: polysaccharide metabolic process	4.10E-04
22	GO:0090342: regulation of cell aging	4.10E-04
23	GO:0031648: protein destabilization	4.10E-04
24	GO:0006521: regulation of cellular amino acid metabolic process	4.10E-04
25	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.10E-04
26	GO:0006518: peptide metabolic process	6.69E-04
27	GO:0048281: inflorescence morphogenesis	6.69E-04
28	GO:0006000: fructose metabolic process	6.69E-04
29	GO:0009405: pathogenesis	6.69E-04
30	GO:0061077: chaperone-mediated protein folding	8.65E-04
31	GO:0010306: rhamnogalacturonan II biosynthetic process	9.55E-04
32	GO:1901332: negative regulation of lateral root development	9.55E-04
33	GO:0010148: transpiration	9.55E-04
34	GO:0001944: vasculature development	1.02E-03
35	GO:0015846: polyamine transport	1.27E-03
36	GO:0010021: amylopectin biosynthetic process	1.27E-03
37	GO:0006808: regulation of nitrogen utilization	1.27E-03
38	GO:0051322: anaphase	1.27E-03
39	GO:0010600: regulation of auxin biosynthetic process	1.27E-03
40	GO:0051205: protein insertion into membrane	1.27E-03
41	GO:0000304: response to singlet oxygen	1.61E-03
42	GO:0010236: plastoquinone biosynthetic process	1.61E-03
43	GO:0045038: protein import into chloroplast thylakoid membrane	1.61E-03
44	GO:0016120: carotene biosynthetic process	1.61E-03
45	GO:0030163: protein catabolic process	1.94E-03
46	GO:0042793: transcription from plastid promoter	1.98E-03
47	GO:0010190: cytochrome b6f complex assembly	1.98E-03
48	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.98E-03
49	GO:0042372: phylloquinone biosynthetic process	2.38E-03
50	GO:0006458: 'de novo' protein folding	2.38E-03
51	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.38E-03
52	GO:0042026: protein refolding	2.38E-03
53	GO:0070370: cellular heat acclimation	2.80E-03
54	GO:0010103: stomatal complex morphogenesis	2.80E-03
55	GO:0010161: red light signaling pathway	2.80E-03
56	GO:0009772: photosynthetic electron transport in photosystem II	2.80E-03
57	GO:0006353: DNA-templated transcription, termination	3.24E-03
58	GO:0030091: protein repair	3.24E-03
59	GO:0009704: de-etiolation	3.24E-03
60	GO:0010928: regulation of auxin mediated signaling pathway	3.24E-03
61	GO:0005978: glycogen biosynthetic process	3.24E-03
62	GO:0009631: cold acclimation	3.70E-03
63	GO:0001558: regulation of cell growth	3.71E-03
64	GO:0006002: fructose 6-phosphate metabolic process	3.71E-03
65	GO:0051865: protein autoubiquitination	4.20E-03
66	GO:0010206: photosystem II repair	4.20E-03
67	GO:0006783: heme biosynthetic process	4.20E-03
68	GO:0005982: starch metabolic process	4.71E-03
69	GO:0043069: negative regulation of programmed cell death	5.24E-03
70	GO:0048829: root cap development	5.24E-03
71	GO:0031627: telomeric loop formation	5.24E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	5.24E-03
73	GO:0006415: translational termination	5.79E-03
74	GO:0019684: photosynthesis, light reaction	5.79E-03
75	GO:0009089: lysine biosynthetic process via diaminopimelate	5.79E-03
76	GO:0009073: aromatic amino acid family biosynthetic process	5.79E-03
77	GO:0009750: response to fructose	5.79E-03
78	GO:0071365: cellular response to auxin stimulus	6.35E-03
79	GO:0002213: defense response to insect	6.35E-03
80	GO:0010628: positive regulation of gene expression	6.94E-03
81	GO:0006094: gluconeogenesis	6.94E-03
82	GO:0005986: sucrose biosynthetic process	6.94E-03
83	GO:0010102: lateral root morphogenesis	6.94E-03
84	GO:0009266: response to temperature stimulus	7.55E-03
85	GO:0006302: double-strand break repair	7.55E-03
86	GO:0015979: photosynthesis	8.02E-03
87	GO:0006810: transport	8.97E-03
88	GO:0009944: polarity specification of adaxial/abaxial axis	9.48E-03
89	GO:0051302: regulation of cell division	1.02E-02
90	GO:0006418: tRNA aminoacylation for protein translation	1.02E-02
91	GO:0007017: microtubule-based process	1.02E-02
92	GO:0031408: oxylipin biosynthetic process	1.09E-02
93	GO:0051321: meiotic cell cycle	1.09E-02
94	GO:0003333: amino acid transmembrane transport	1.09E-02
95	GO:0019915: lipid storage	1.09E-02
96	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.16E-02
97	GO:0019748: secondary metabolic process	1.16E-02
98	GO:0010017: red or far-red light signaling pathway	1.16E-02
99	GO:0009686: gibberellin biosynthetic process	1.23E-02
100	GO:0006284: base-excision repair	1.31E-02
101	GO:0016117: carotenoid biosynthetic process	1.38E-02
102	GO:0055114: oxidation-reduction process	1.46E-02
103	GO:0009790: embryo development	1.47E-02
104	GO:0048868: pollen tube development	1.54E-02
105	GO:0009414: response to water deprivation	1.59E-02
106	GO:0019252: starch biosynthetic process	1.70E-02
107	GO:0045490: pectin catabolic process	1.74E-02
108	GO:0071554: cell wall organization or biogenesis	1.79E-02
109	GO:0010583: response to cyclopentenone	1.87E-02
110	GO:1901657: glycosyl compound metabolic process	1.96E-02
111	GO:0009735: response to cytokinin	2.05E-02
112	GO:0000910: cytokinesis	2.23E-02
113	GO:0009627: systemic acquired resistance	2.51E-02
114	GO:0009409: response to cold	2.58E-02
115	GO:0016311: dephosphorylation	2.71E-02
116	GO:0042254: ribosome biogenesis	2.74E-02
117	GO:0009817: defense response to fungus, incompatible interaction	2.81E-02
118	GO:0010218: response to far red light	3.01E-02
119	GO:0009834: plant-type secondary cell wall biogenesis	3.01E-02
120	GO:0006631: fatty acid metabolic process	3.76E-02
121	GO:0010114: response to red light	3.98E-02
122	GO:0009965: leaf morphogenesis	4.32E-02
123	GO:0009664: plant-type cell wall organization	4.68E-02
124	GO:0006629: lipid metabolic process	4.89E-02
125	GO:0006281: DNA repair	4.89E-02
126	GO:0006364: rRNA processing	4.92E-02
127	GO:0006486: protein glycosylation	4.92E-02
128	GO:0009585: red, far-red light phototransduction	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0009899: ent-kaurene synthase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
6	GO:0016279: protein-lysine N-methyltransferase activity	2.51E-05
7	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.51E-05
8	GO:0048038: quinone binding	1.47E-04
9	GO:0004134: 4-alpha-glucanotransferase activity	1.82E-04
10	GO:0004645: phosphorylase activity	1.82E-04
11	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.82E-04
12	GO:0008184: glycogen phosphorylase activity	1.82E-04
13	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.82E-04
14	GO:0080132: fatty acid alpha-hydroxylase activity	1.82E-04
15	GO:0004853: uroporphyrinogen decarboxylase activity	1.82E-04
16	GO:0044183: protein binding involved in protein folding	3.54E-04
17	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.10E-04
18	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.10E-04
19	GO:0016868: intramolecular transferase activity, phosphotransferases	4.10E-04
20	GO:0010297: heteropolysaccharide binding	4.10E-04
21	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.10E-04
22	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.10E-04
23	GO:0090729: toxin activity	6.69E-04
24	GO:0043169: cation binding	6.69E-04
25	GO:0017150: tRNA dihydrouridine synthase activity	6.69E-04
26	GO:0005528: FK506 binding	7.17E-04
27	GO:0015203: polyamine transmembrane transporter activity	9.55E-04
28	GO:0016851: magnesium chelatase activity	9.55E-04
29	GO:0016149: translation release factor activity, codon specific	9.55E-04
30	GO:0043023: ribosomal large subunit binding	9.55E-04
31	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.55E-04
32	GO:0030570: pectate lyase activity	1.02E-03
33	GO:0042277: peptide binding	1.27E-03
34	GO:0004659: prenyltransferase activity	1.27E-03
35	GO:0019199: transmembrane receptor protein kinase activity	1.27E-03
36	GO:0008725: DNA-3-methyladenine glycosylase activity	1.61E-03
37	GO:2001070: starch binding	1.98E-03
38	GO:0016491: oxidoreductase activity	2.12E-03
39	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.38E-03
40	GO:0004033: aldo-keto reductase (NADP) activity	3.24E-03
41	GO:0003747: translation release factor activity	4.20E-03
42	GO:0015174: basic amino acid transmembrane transporter activity	4.71E-03
43	GO:0000287: magnesium ion binding	5.03E-03
44	GO:0047372: acylglycerol lipase activity	5.79E-03
45	GO:0003691: double-stranded telomeric DNA binding	5.79E-03
46	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.08E-03
47	GO:0008378: galactosyltransferase activity	6.35E-03
48	GO:0004565: beta-galactosidase activity	6.94E-03
49	GO:0004190: aspartic-type endopeptidase activity	8.18E-03
50	GO:0008408: 3'-5' exonuclease activity	1.09E-02
51	GO:0019843: rRNA binding	1.25E-02
52	GO:0016829: lyase activity	1.36E-02
53	GO:0004812: aminoacyl-tRNA ligase activity	1.38E-02
54	GO:0016787: hydrolase activity	1.72E-02
55	GO:0005200: structural constituent of cytoskeleton	2.14E-02
56	GO:0016413: O-acetyltransferase activity	2.23E-02
57	GO:0016597: amino acid binding	2.23E-02
58	GO:0102483: scopolin beta-glucosidase activity	2.61E-02
59	GO:0008236: serine-type peptidase activity	2.71E-02
60	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.81E-02
61	GO:0004222: metalloendopeptidase activity	3.01E-02
62	GO:0030145: manganese ion binding	3.11E-02
63	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.32E-02
64	GO:0008422: beta-glucosidase activity	3.54E-02
65	GO:0004185: serine-type carboxypeptidase activity	3.98E-02
66	GO:0051537: 2 iron, 2 sulfur cluster binding	4.21E-02
67	GO:0043621: protein self-association	4.21E-02
68	GO:0015293: symporter activity	4.32E-02
69	GO:0003924: GTPase activity	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.07E-21
2	GO:0009570: chloroplast stroma	6.05E-12
3	GO:0009535: chloroplast thylakoid membrane	8.35E-12
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.41E-08
5	GO:0009534: chloroplast thylakoid	1.04E-07
6	GO:0009941: chloroplast envelope	1.28E-07
7	GO:0009543: chloroplast thylakoid lumen	2.93E-05
8	GO:0000791: euchromatin	1.82E-04
9	GO:0030870: Mre11 complex	4.10E-04
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.10E-04
11	GO:0009579: thylakoid	4.32E-04
12	GO:0031977: thylakoid lumen	5.97E-04
13	GO:0010007: magnesium chelatase complex	6.69E-04
14	GO:0009509: chromoplast	6.69E-04
15	GO:0000795: synaptonemal complex	1.61E-03
16	GO:0009536: plastid	1.84E-03
17	GO:0010287: plastoglobule	1.84E-03
18	GO:0009295: nucleoid	2.19E-03
19	GO:0009533: chloroplast stromal thylakoid	2.80E-03
20	GO:0009501: amyloplast	3.24E-03
21	GO:0000783: nuclear telomere cap complex	3.71E-03
22	GO:0045298: tubulin complex	4.20E-03
23	GO:0005874: microtubule	6.49E-03
24	GO:0031969: chloroplast membrane	6.77E-03
25	GO:0009508: plastid chromosome	6.94E-03
26	GO:0009574: preprophase band	6.94E-03
27	GO:0030095: chloroplast photosystem II	7.55E-03
28	GO:0043234: protein complex	8.82E-03
29	GO:0042651: thylakoid membrane	1.02E-02
30	GO:0009654: photosystem II oxygen evolving complex	1.02E-02
31	GO:0019898: extrinsic component of membrane	1.70E-02
32	GO:0000785: chromatin	1.87E-02
33	GO:0015934: large ribosomal subunit	3.11E-02