co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G77030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0055122: response to very low light intensity stimulus	0.00E+00
2	GO:0039694: viral RNA genome replication	0.00E+00
3	GO:0090069: regulation of ribosome biogenesis	0.00E+00
4	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
5	GO:0006364: rRNA processing	6.60E-11
6	GO:0010501: RNA secondary structure unwinding	1.66E-07
7	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.58E-07
8	GO:0006405: RNA export from nucleus	7.69E-06
9	GO:0006606: protein import into nucleus	1.15E-05
10	GO:0009553: embryo sac development	1.53E-05
11	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.69E-05
12	GO:0030490: maturation of SSU-rRNA	6.74E-05
13	GO:0010930: negative regulation of auxin mediated signaling pathway	6.74E-05
14	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	6.74E-05
15	GO:1902182: shoot apical meristem development	6.74E-05
16	GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	6.74E-05
17	GO:2000232: regulation of rRNA processing	6.74E-05
18	GO:0043985: histone H4-R3 methylation	6.74E-05
19	GO:0036228: protein targeting to nuclear inner membrane	6.74E-05
20	GO:0000469: cleavage involved in rRNA processing	6.74E-05
21	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	6.74E-05
22	GO:0006610: ribosomal protein import into nucleus	1.62E-04
23	GO:0080009: mRNA methylation	1.62E-04
24	GO:0070475: rRNA base methylation	2.75E-04
25	GO:0045604: regulation of epidermal cell differentiation	2.75E-04
26	GO:0042780: tRNA 3'-end processing	2.75E-04
27	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.75E-04
28	GO:0007276: gamete generation	3.98E-04
29	GO:0046345: abscisic acid catabolic process	5.32E-04
30	GO:0042273: ribosomal large subunit biogenesis	5.32E-04
31	GO:0009451: RNA modification	5.63E-04
32	GO:0000470: maturation of LSU-rRNA	8.23E-04
33	GO:0000060: protein import into nucleus, translocation	8.23E-04
34	GO:0010077: maintenance of inflorescence meristem identity	9.79E-04
35	GO:0048444: floral organ morphogenesis	9.79E-04
36	GO:0045995: regulation of embryonic development	1.14E-03
37	GO:0019827: stem cell population maintenance	1.32E-03
38	GO:0006875: cellular metal ion homeostasis	1.32E-03
39	GO:0001522: pseudouridine synthesis	1.32E-03
40	GO:0000028: ribosomal small subunit assembly	1.32E-03
41	GO:0009880: embryonic pattern specification	1.50E-03
42	GO:0006607: NLS-bearing protein import into nucleus	1.69E-03
43	GO:2000024: regulation of leaf development	1.69E-03
44	GO:0000373: Group II intron splicing	1.69E-03
45	GO:0001708: cell fate specification	1.69E-03
46	GO:0009793: embryo development ending in seed dormancy	1.81E-03
47	GO:0006349: regulation of gene expression by genetic imprinting	1.89E-03
48	GO:0006417: regulation of translation	2.04E-03
49	GO:0006913: nucleocytoplasmic transport	2.31E-03
50	GO:0010582: floral meristem determinacy	2.53E-03
51	GO:0010030: positive regulation of seed germination	3.23E-03
52	GO:0009790: embryo development	3.79E-03
53	GO:0051302: regulation of cell division	3.99E-03
54	GO:0051301: cell division	4.59E-03
55	GO:0009561: megagametogenesis	5.09E-03
56	GO:0051028: mRNA transport	5.38E-03
57	GO:0006457: protein folding	5.71E-03
58	GO:0009960: endosperm development	5.98E-03
59	GO:0010305: leaf vascular tissue pattern formation	5.98E-03
60	GO:0010197: polar nucleus fusion	5.98E-03
61	GO:0006342: chromatin silencing	5.98E-03
62	GO:0048825: cotyledon development	6.60E-03
63	GO:0042254: ribosome biogenesis	7.04E-03
64	GO:0032259: methylation	1.21E-02
65	GO:0009926: auxin polar transport	1.52E-02
66	GO:0006260: DNA replication	1.74E-02
67	GO:0009909: regulation of flower development	2.02E-02
68	GO:0009555: pollen development	2.26E-02
69	GO:0006413: translational initiation	3.39E-02
70	GO:0010228: vegetative to reproductive phase transition of meristem	3.68E-02
71	GO:0007166: cell surface receptor signaling pathway	3.92E-02
72	GO:0008380: RNA splicing	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:0004164: diphthine synthase activity	0.00E+00
2	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
3	GO:0000166: nucleotide binding	4.96E-11
4	GO:0003723: RNA binding	3.17E-09
5	GO:0008026: ATP-dependent helicase activity	1.53E-08
6	GO:0004004: ATP-dependent RNA helicase activity	1.72E-08
7	GO:0001054: RNA polymerase I activity	1.05E-06
8	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.79E-06
9	GO:0030515: snoRNA binding	2.32E-05
10	GO:0017056: structural constituent of nuclear pore	3.06E-05
11	GO:0005487: nucleocytoplasmic transporter activity	5.97E-05
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	6.74E-05
13	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	6.74E-05
14	GO:0043021: ribonucleoprotein complex binding	1.62E-04
15	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	1.62E-04
16	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.75E-04
17	GO:0004519: endonuclease activity	3.41E-04
18	GO:0005543: phospholipid binding	2.31E-03
19	GO:0004521: endoribonuclease activity	2.53E-03
20	GO:0001056: RNA polymerase III activity	2.53E-03
21	GO:0008139: nuclear localization sequence binding	2.76E-03
22	GO:0003887: DNA-directed DNA polymerase activity	3.48E-03
23	GO:0043130: ubiquitin binding	3.73E-03
24	GO:0008536: Ran GTPase binding	5.98E-03
25	GO:0003713: transcription coactivator activity	5.98E-03
26	GO:0008168: methyltransferase activity	6.65E-03
27	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.04E-02
28	GO:0000987: core promoter proximal region sequence-specific DNA binding	1.31E-02
29	GO:0042393: histone binding	1.39E-02
30	GO:0051082: unfolded protein binding	2.42E-02
31	GO:0004386: helicase activity	2.57E-02
32	GO:0008565: protein transporter activity	3.22E-02
33	GO:0003743: translation initiation factor activity	3.98E-02
34	GO:0008270: zinc ion binding	4.40E-02
35	GO:0005515: protein binding	4.46E-02
36	GO:0005524: ATP binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0019034: viral replication complex	0.00E+00
2	GO:0034455: t-UTP complex	0.00E+00
3	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0005730: nucleolus	2.48E-16
6	GO:0005634: nucleus	1.66E-10
7	GO:0034399: nuclear periphery	2.02E-07
8	GO:0070545: PeBoW complex	2.58E-07
9	GO:0005736: DNA-directed RNA polymerase I complex	4.28E-07
10	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.71E-06
11	GO:0030687: preribosome, large subunit precursor	2.32E-05
12	GO:0044611: nuclear pore inner ring	6.74E-05
13	GO:0030688: preribosome, small subunit precursor	6.74E-05
14	GO:0032040: small-subunit processome	9.94E-05
15	GO:0044613: nuclear pore central transport channel	1.62E-04
16	GO:0043234: protein complex	1.68E-04
17	GO:0005643: nuclear pore	8.66E-04
18	GO:0005666: DNA-directed RNA polymerase III complex	1.89E-03
19	GO:0042651: thylakoid membrane	3.99E-03
20	GO:0015935: small ribosomal subunit	4.26E-03
21	GO:0031965: nuclear membrane	6.60E-03
22	GO:0005635: nuclear envelope	1.97E-02
23	GO:0016607: nuclear speck	2.17E-02
24	GO:0005834: heterotrimeric G-protein complex	2.22E-02
25	GO:0005654: nucleoplasm	2.78E-02
26	GO:0005759: mitochondrial matrix	3.33E-02