co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G76405

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071000: response to magnetism	0.00E+00
2	GO:0032928: regulation of superoxide anion generation	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:1904281: positive regulation of transcription from RNA polymerase V promoter	0.00E+00
5	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
6	GO:1990280: RNA localization to chromatin	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0009583: detection of light stimulus	0.00E+00
9	GO:0080005: photosystem stoichiometry adjustment	1.52E-06
10	GO:0033014: tetrapyrrole biosynthetic process	1.30E-05
11	GO:0010117: photoprotection	3.89E-05
12	GO:0016123: xanthophyll biosynthetic process	3.89E-05
13	GO:0034971: histone H3-R17 methylation	1.77E-04
14	GO:0072387: flavin adenine dinucleotide metabolic process	1.77E-04
15	GO:0042371: vitamin K biosynthetic process	1.77E-04
16	GO:0071461: cellular response to redox state	1.77E-04
17	GO:1902466: positive regulation of histone H3-K27 trimethylation	1.77E-04
18	GO:0048438: floral whorl development	1.77E-04
19	GO:0034970: histone H3-R2 methylation	1.77E-04
20	GO:0034972: histone H3-R26 methylation	1.77E-04
21	GO:1903705: positive regulation of production of siRNA involved in RNA interference	1.77E-04
22	GO:0045036: protein targeting to chloroplast	2.95E-04
23	GO:1900871: chloroplast mRNA modification	4.01E-04
24	GO:0010617: circadian regulation of calcium ion oscillation	4.01E-04
25	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.01E-04
26	GO:0099402: plant organ development	4.01E-04
27	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	4.01E-04
28	GO:0016122: xanthophyll metabolic process	4.01E-04
29	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.01E-04
30	GO:0043039: tRNA aminoacylation	4.01E-04
31	GO:0010343: singlet oxygen-mediated programmed cell death	4.01E-04
32	GO:1901529: positive regulation of anion channel activity	4.01E-04
33	GO:0048255: mRNA stabilization	4.01E-04
34	GO:1901672: positive regulation of systemic acquired resistance	6.55E-04
35	GO:0009150: purine ribonucleotide metabolic process	6.55E-04
36	GO:0006696: ergosterol biosynthetic process	6.55E-04
37	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	6.55E-04
38	GO:1902448: positive regulation of shade avoidance	6.55E-04
39	GO:0006013: mannose metabolic process	6.55E-04
40	GO:0007017: microtubule-based process	7.64E-04
41	GO:0009658: chloroplast organization	9.02E-04
42	GO:1901332: negative regulation of lateral root development	9.34E-04
43	GO:2001141: regulation of RNA biosynthetic process	9.34E-04
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.34E-04
45	GO:0016117: carotenoid biosynthetic process	1.16E-03
46	GO:1902347: response to strigolactone	1.24E-03
47	GO:0006346: methylation-dependent chromatin silencing	1.24E-03
48	GO:0042274: ribosomal small subunit biogenesis	1.24E-03
49	GO:0031935: regulation of chromatin silencing	1.24E-03
50	GO:0009765: photosynthesis, light harvesting	1.24E-03
51	GO:0051567: histone H3-K9 methylation	1.24E-03
52	GO:0009958: positive gravitropism	1.35E-03
53	GO:0046283: anthocyanin-containing compound metabolic process	1.57E-03
54	GO:0045038: protein import into chloroplast thylakoid membrane	1.57E-03
55	GO:0016120: carotene biosynthetic process	1.57E-03
56	GO:0000741: karyogamy	1.94E-03
57	GO:0060918: auxin transport	1.94E-03
58	GO:0010190: cytochrome b6f complex assembly	1.94E-03
59	GO:0016458: gene silencing	1.94E-03
60	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.94E-03
61	GO:0016070: RNA metabolic process	1.94E-03
62	GO:0031053: primary miRNA processing	1.94E-03
63	GO:1901371: regulation of leaf morphogenesis	1.94E-03
64	GO:0010076: maintenance of floral meristem identity	2.32E-03
65	GO:0017148: negative regulation of translation	2.32E-03
66	GO:0010019: chloroplast-nucleus signaling pathway	2.32E-03
67	GO:0010310: regulation of hydrogen peroxide metabolic process	2.32E-03
68	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.32E-03
69	GO:0016126: sterol biosynthetic process	2.38E-03
70	GO:0051510: regulation of unidimensional cell growth	2.74E-03
71	GO:1900056: negative regulation of leaf senescence	2.74E-03
72	GO:0080111: DNA demethylation	2.74E-03
73	GO:0015995: chlorophyll biosynthetic process	2.80E-03
74	GO:0042255: ribosome assembly	3.17E-03
75	GO:0006353: DNA-templated transcription, termination	3.17E-03
76	GO:0009704: de-etiolation	3.17E-03
77	GO:0048564: photosystem I assembly	3.17E-03
78	GO:0045292: mRNA cis splicing, via spliceosome	3.17E-03
79	GO:0010928: regulation of auxin mediated signaling pathway	3.17E-03
80	GO:0009910: negative regulation of flower development	3.57E-03
81	GO:0044030: regulation of DNA methylation	3.63E-03
82	GO:0071482: cellular response to light stimulus	3.63E-03
83	GO:0022900: electron transport chain	3.63E-03
84	GO:0006783: heme biosynthetic process	4.10E-03
85	GO:1900426: positive regulation of defense response to bacterium	4.60E-03
86	GO:0009638: phototropism	4.60E-03
87	GO:0006779: porphyrin-containing compound biosynthetic process	4.60E-03
88	GO:1900865: chloroplast RNA modification	4.60E-03
89	GO:0010380: regulation of chlorophyll biosynthetic process	4.60E-03
90	GO:0009688: abscisic acid biosynthetic process	5.11E-03
91	GO:0006782: protoporphyrinogen IX biosynthetic process	5.11E-03
92	GO:0009644: response to high light intensity	5.44E-03
93	GO:0043085: positive regulation of catalytic activity	5.65E-03
94	GO:0006352: DNA-templated transcription, initiation	5.65E-03
95	GO:0010582: floral meristem determinacy	6.20E-03
96	GO:0006790: sulfur compound metabolic process	6.20E-03
97	GO:0010075: regulation of meristem growth	6.78E-03
98	GO:0009725: response to hormone	6.78E-03
99	GO:0009767: photosynthetic electron transport chain	6.78E-03
100	GO:0009785: blue light signaling pathway	6.78E-03
101	GO:0010207: photosystem II assembly	7.37E-03
102	GO:0009266: response to temperature stimulus	7.37E-03
103	GO:0080188: RNA-directed DNA methylation	7.98E-03
104	GO:0000162: tryptophan biosynthetic process	8.61E-03
105	GO:0006289: nucleotide-excision repair	9.26E-03
106	GO:2000377: regulation of reactive oxygen species metabolic process	9.26E-03
107	GO:0006418: tRNA aminoacylation for protein translation	9.92E-03
108	GO:0006306: DNA methylation	1.06E-02
109	GO:0016226: iron-sulfur cluster assembly	1.13E-02
110	GO:0008033: tRNA processing	1.43E-02
111	GO:0010051: xylem and phloem pattern formation	1.43E-02
112	GO:0010087: phloem or xylem histogenesis	1.43E-02
113	GO:0010118: stomatal movement	1.43E-02
114	GO:0010197: polar nucleus fusion	1.50E-02
115	GO:0042752: regulation of circadian rhythm	1.58E-02
116	GO:0009646: response to absence of light	1.58E-02
117	GO:0009851: auxin biosynthetic process	1.66E-02
118	GO:0009791: post-embryonic development	1.66E-02
119	GO:0009451: RNA modification	1.71E-02
120	GO:0006891: intra-Golgi vesicle-mediated transport	1.75E-02
121	GO:0010228: vegetative to reproductive phase transition of meristem	1.75E-02
122	GO:0032502: developmental process	1.83E-02
123	GO:0007264: small GTPase mediated signal transduction	1.83E-02
124	GO:0006464: cellular protein modification process	2.00E-02
125	GO:0000910: cytokinesis	2.18E-02
126	GO:0009816: defense response to bacterium, incompatible interaction	2.36E-02
127	GO:0006906: vesicle fusion	2.45E-02
128	GO:0006888: ER to Golgi vesicle-mediated transport	2.55E-02
129	GO:0006950: response to stress	2.55E-02
130	GO:0018298: protein-chromophore linkage	2.74E-02
131	GO:0010218: response to far red light	2.94E-02
132	GO:0007568: aging	3.04E-02
133	GO:0009637: response to blue light	3.24E-02
134	GO:0046777: protein autophosphorylation	3.44E-02
135	GO:0006897: endocytosis	3.67E-02
136	GO:0009640: photomorphogenesis	3.88E-02
137	GO:0010114: response to red light	3.88E-02
138	GO:0009744: response to sucrose	3.88E-02
139	GO:0009965: leaf morphogenesis	4.22E-02
140	GO:0006260: DNA replication	4.45E-02
141	GO:0000165: MAPK cascade	4.45E-02
142	GO:0032259: methylation	4.53E-02
143	GO:0051603: proteolysis involved in cellular protein catabolic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0046905: phytoene synthase activity	0.00E+00
2	GO:0008170: N-methyltransferase activity	0.00E+00
3	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
4	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
5	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0009008: DNA-methyltransferase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0004848: ureidoglycolate hydrolase activity	5.61E-06
10	GO:0051996: squalene synthase activity	1.77E-04
11	GO:0030941: chloroplast targeting sequence binding	1.77E-04
12	GO:0046906: tetrapyrrole binding	1.77E-04
13	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.77E-04
14	GO:0004831: tyrosine-tRNA ligase activity	1.77E-04
15	GO:0004325: ferrochelatase activity	1.77E-04
16	GO:0071949: FAD binding	2.09E-04
17	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.01E-04
18	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.01E-04
19	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.01E-04
20	GO:0017118: lipoyltransferase activity	4.01E-04
21	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.01E-04
22	GO:0004109: coproporphyrinogen oxidase activity	4.01E-04
23	GO:0016491: oxidoreductase activity	5.47E-04
24	GO:0000900: translation repressor activity, nucleic acid binding	6.55E-04
25	GO:0008469: histone-arginine N-methyltransferase activity	6.55E-04
26	GO:0004180: carboxypeptidase activity	6.55E-04
27	GO:0032947: protein complex scaffold	6.55E-04
28	GO:0019003: GDP binding	6.55E-04
29	GO:0000339: RNA cap binding	9.34E-04
30	GO:0009882: blue light photoreceptor activity	9.34E-04
31	GO:0047627: adenylylsulfatase activity	9.34E-04
32	GO:0043023: ribosomal large subunit binding	9.34E-04
33	GO:0000254: C-4 methylsterol oxidase activity	9.34E-04
34	GO:0003727: single-stranded RNA binding	1.07E-03
35	GO:0001053: plastid sigma factor activity	1.24E-03
36	GO:0004834: tryptophan synthase activity	1.24E-03
37	GO:0051861: glycolipid binding	1.24E-03
38	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.24E-03
39	GO:0016987: sigma factor activity	1.24E-03
40	GO:0048038: quinone binding	1.65E-03
41	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.32E-03
42	GO:0004559: alpha-mannosidase activity	2.32E-03
43	GO:0019899: enzyme binding	2.74E-03
44	GO:0001055: RNA polymerase II activity	4.60E-03
45	GO:0008168: methyltransferase activity	4.70E-03
46	GO:0001054: RNA polymerase I activity	5.65E-03
47	GO:0001056: RNA polymerase III activity	6.20E-03
48	GO:0031072: heat shock protein binding	6.78E-03
49	GO:0000175: 3'-5'-exoribonuclease activity	6.78E-03
50	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.78E-03
51	GO:0003777: microtubule motor activity	7.51E-03
52	GO:0003887: DNA-directed DNA polymerase activity	8.61E-03
53	GO:0051536: iron-sulfur cluster binding	9.26E-03
54	GO:0004176: ATP-dependent peptidase activity	1.06E-02
55	GO:0008408: 3'-5' exonuclease activity	1.06E-02
56	GO:0004812: aminoacyl-tRNA ligase activity	1.35E-02
57	GO:0008080: N-acetyltransferase activity	1.50E-02
58	GO:0004872: receptor activity	1.66E-02
59	GO:0004518: nuclease activity	1.83E-02
60	GO:0008237: metallopeptidase activity	2.09E-02
61	GO:0008483: transaminase activity	2.09E-02
62	GO:0042802: identical protein binding	2.13E-02
63	GO:0003723: RNA binding	2.53E-02
64	GO:0008236: serine-type peptidase activity	2.64E-02
65	GO:0005096: GTPase activator activity	2.84E-02
66	GO:0004222: metalloendopeptidase activity	2.94E-02
67	GO:0000149: SNARE binding	3.45E-02
68	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.45E-02
69	GO:0051539: 4 iron, 4 sulfur cluster binding	3.56E-02
70	GO:0005484: SNAP receptor activity	3.88E-02
71	GO:0004185: serine-type carboxypeptidase activity	3.88E-02
72	GO:0042803: protein homodimerization activity	4.03E-02
73	GO:0051537: 2 iron, 2 sulfur cluster binding	4.11E-02
74	GO:0035091: phosphatidylinositol binding	4.11E-02
75	GO:0005198: structural molecule activity	4.22E-02
76	GO:0003924: GTPase activity	4.73E-02
77	GO:0016787: hydrolase activity	4.77E-02
78	GO:0003690: double-stranded DNA binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	4.75E-16
3	GO:0009535: chloroplast thylakoid membrane	4.61E-06
4	GO:0030286: dynein complex	2.40E-05
5	GO:0031969: chloroplast membrane	2.67E-05
6	GO:0005845: mRNA cap binding complex	1.77E-04
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.09E-04
8	GO:0080085: signal recognition particle, chloroplast targeting	4.01E-04
9	GO:0005846: nuclear cap binding complex	4.01E-04
10	GO:0005875: microtubule associated complex	6.28E-04
11	GO:0016605: PML body	6.55E-04
12	GO:0005797: Golgi medial cisterna	6.55E-04
13	GO:0009517: PSII associated light-harvesting complex II	1.24E-03
14	GO:0055035: plastid thylakoid membrane	1.57E-03
15	GO:0030140: trans-Golgi network transport vesicle	1.94E-03
16	GO:0005801: cis-Golgi network	2.32E-03
17	GO:0009840: chloroplastic endopeptidase Clp complex	2.32E-03
18	GO:0031359: integral component of chloroplast outer membrane	2.74E-03
19	GO:0000123: histone acetyltransferase complex	2.74E-03
20	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	3.63E-03
21	GO:0016604: nuclear body	4.60E-03
22	GO:0009536: plastid	6.17E-03
23	GO:0009570: chloroplast stroma	6.80E-03
24	GO:0000419: DNA-directed RNA polymerase V complex	8.61E-03
25	GO:0042651: thylakoid membrane	9.92E-03
26	GO:0015935: small ribosomal subunit	1.06E-02
27	GO:0005654: nucleoplasm	1.18E-02
28	GO:0005623: cell	1.24E-02
29	GO:0009505: plant-type cell wall	2.19E-02
30	GO:0009941: chloroplast envelope	2.35E-02
31	GO:0009707: chloroplast outer membrane	2.74E-02
32	GO:0005819: spindle	3.45E-02
33	GO:0031201: SNARE complex	3.67E-02
34	GO:0005802: trans-Golgi network	3.95E-02
35	GO:0005856: cytoskeleton	4.22E-02
36	GO:0005622: intracellular	4.49E-02
37	GO:0031966: mitochondrial membrane	4.56E-02
38	GO:0005768: endosome	4.63E-02