co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G76390

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001143: N-methylnicotinate transport	0.00E+00
2	GO:0080169: cellular response to boron-containing substance deprivation	0.00E+00
3	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
4	GO:2001142: nicotinate transport	0.00E+00
5	GO:0019427: acetyl-CoA biosynthetic process from acetate	0.00E+00
6	GO:0061416: regulation of transcription from RNA polymerase II promoter in response to salt stress	0.00E+00
7	GO:0009699: phenylpropanoid biosynthetic process	5.54E-09
8	GO:0010372: positive regulation of gibberellin biosynthetic process	6.25E-07
9	GO:0045227: capsule polysaccharide biosynthetic process	1.06E-05
10	GO:0033358: UDP-L-arabinose biosynthetic process	1.06E-05
11	GO:0071669: plant-type cell wall organization or biogenesis	5.05E-05
12	GO:0006402: mRNA catabolic process	6.58E-05
13	GO:0018920: glyphosate metabolic process	1.10E-04
14	GO:0080157: regulation of plant-type cell wall organization or biogenesis	1.10E-04
15	GO:0006083: acetate metabolic process	1.10E-04
16	GO:0046244: salicylic acid catabolic process	1.10E-04
17	GO:0000266: mitochondrial fission	2.01E-04
18	GO:0009805: coumarin biosynthetic process	2.57E-04
19	GO:0009812: flavonoid metabolic process	2.57E-04
20	GO:0034605: cellular response to heat	2.61E-04
21	GO:0009225: nucleotide-sugar metabolic process	2.94E-04
22	GO:0009611: response to wounding	4.01E-04
23	GO:0006065: UDP-glucuronate biosynthetic process	4.25E-04
24	GO:0010447: response to acidic pH	4.25E-04
25	GO:0052546: cell wall pectin metabolic process	4.25E-04
26	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	4.25E-04
27	GO:0006012: galactose metabolic process	5.28E-04
28	GO:0009306: protein secretion	5.72E-04
29	GO:0009800: cinnamic acid biosynthetic process	6.10E-04
30	GO:0046836: glycolipid transport	6.10E-04
31	GO:0009399: nitrogen fixation	6.10E-04
32	GO:0000271: polysaccharide biosynthetic process	6.67E-04
33	GO:0006468: protein phosphorylation	6.68E-04
34	GO:0015743: malate transport	8.10E-04
35	GO:0002229: defense response to oomycetes	8.78E-04
36	GO:0009845: seed germination	9.11E-04
37	GO:0031047: gene silencing by RNA	9.34E-04
38	GO:0030041: actin filament polymerization	1.02E-03
39	GO:0032957: inositol trisphosphate metabolic process	1.02E-03
40	GO:0016579: protein deubiquitination	1.18E-03
41	GO:1900425: negative regulation of defense response to bacterium	1.25E-03
42	GO:0033365: protein localization to organelle	1.25E-03
43	GO:0048317: seed morphogenesis	1.25E-03
44	GO:0006559: L-phenylalanine catabolic process	1.25E-03
45	GO:0046855: inositol phosphate dephosphorylation	1.25E-03
46	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.32E-03
47	GO:0009737: response to abscisic acid	1.36E-03
48	GO:0009423: chorismate biosynthetic process	1.49E-03
49	GO:0030244: cellulose biosynthetic process	1.61E-03
50	GO:0009832: plant-type cell wall biogenesis	1.69E-03
51	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	1.75E-03
52	GO:0010044: response to aluminum ion	1.75E-03
53	GO:0006744: ubiquinone biosynthetic process	1.75E-03
54	GO:0009555: pollen development	1.95E-03
55	GO:0045010: actin nucleation	2.03E-03
56	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.03E-03
57	GO:0009819: drought recovery	2.03E-03
58	GO:0009808: lignin metabolic process	2.32E-03
59	GO:0090333: regulation of stomatal closure	2.62E-03
60	GO:0009835: fruit ripening	2.62E-03
61	GO:0008202: steroid metabolic process	2.93E-03
62	GO:0007064: mitotic sister chromatid cohesion	3.25E-03
63	GO:0048829: root cap development	3.25E-03
64	GO:0010215: cellulose microfibril organization	3.25E-03
65	GO:0009651: response to salt stress	3.33E-03
66	GO:0009809: lignin biosynthetic process	3.51E-03
67	GO:0009073: aromatic amino acid family biosynthetic process	3.59E-03
68	GO:1903507: negative regulation of nucleic acid-templated transcription	3.59E-03
69	GO:0046856: phosphatidylinositol dephosphorylation	3.59E-03
70	GO:0009698: phenylpropanoid metabolic process	3.59E-03
71	GO:0015770: sucrose transport	3.59E-03
72	GO:0010152: pollen maturation	3.93E-03
73	GO:0046274: lignin catabolic process	4.30E-03
74	GO:0090351: seedling development	5.04E-03
75	GO:0046854: phosphatidylinositol phosphorylation	5.04E-03
76	GO:0009901: anther dehiscence	5.04E-03
77	GO:0005985: sucrose metabolic process	5.04E-03
78	GO:0016310: phosphorylation	6.43E-03
79	GO:0016998: cell wall macromolecule catabolic process	6.67E-03
80	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.11E-03
81	GO:0007005: mitochondrion organization	7.11E-03
82	GO:0040007: growth	7.55E-03
83	GO:0009693: ethylene biosynthetic process	7.55E-03
84	GO:0071215: cellular response to abscisic acid stimulus	7.55E-03
85	GO:0009686: gibberellin biosynthetic process	7.55E-03
86	GO:0006817: phosphate ion transport	8.00E-03
87	GO:0016036: cellular response to phosphate starvation	8.01E-03
88	GO:0042631: cellular response to water deprivation	8.93E-03
89	GO:0009409: response to cold	9.00E-03
90	GO:0009738: abscisic acid-activated signaling pathway	9.08E-03
91	GO:0048868: pollen tube development	9.41E-03
92	GO:0009960: endosperm development	9.41E-03
93	GO:0006470: protein dephosphorylation	9.83E-03
94	GO:0006891: intra-Golgi vesicle-mediated transport	1.09E-02
95	GO:0010583: response to cyclopentenone	1.14E-02
96	GO:0032502: developmental process	1.14E-02
97	GO:0055085: transmembrane transport	1.28E-02
98	GO:0048573: photoperiodism, flowering	1.59E-02
99	GO:0016049: cell growth	1.65E-02
100	GO:0080167: response to karrikin	1.66E-02
101	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.71E-02
102	GO:0046777: protein autophosphorylation	1.77E-02
103	GO:0048767: root hair elongation	1.77E-02
104	GO:0009813: flavonoid biosynthetic process	1.77E-02
105	GO:0010311: lateral root formation	1.77E-02
106	GO:0009407: toxin catabolic process	1.83E-02
107	GO:0010119: regulation of stomatal movement	1.89E-02
108	GO:0009867: jasmonic acid mediated signaling pathway	2.02E-02
109	GO:0006886: intracellular protein transport	2.05E-02
110	GO:0006839: mitochondrial transport	2.22E-02
111	GO:0009414: response to water deprivation	2.25E-02
112	GO:0006631: fatty acid metabolic process	2.29E-02
113	GO:0042742: defense response to bacterium	2.31E-02
114	GO:0006397: mRNA processing	2.55E-02
115	GO:0009753: response to jasmonic acid	2.63E-02
116	GO:0009636: response to toxic substance	2.63E-02
117	GO:0031347: regulation of defense response	2.77E-02
118	GO:0010224: response to UV-B	3.07E-02
119	GO:0046686: response to cadmium ion	4.01E-02

Rank	GO Term	Adjusted P value
1	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
2	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
3	GO:0090416: nicotinate transporter activity	0.00E+00
4	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
5	GO:0047734: CDP-glycerol diphosphatase activity	0.00E+00
6	GO:0050373: UDP-arabinose 4-epimerase activity	1.06E-05
7	GO:0051753: mannan synthase activity	3.74E-05
8	GO:0003978: UDP-glucose 4-epimerase activity	3.74E-05
9	GO:0016301: kinase activity	6.80E-05
10	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	1.10E-04
11	GO:0003866: 3-phosphoshikimate 1-carboxyvinyltransferase activity	1.10E-04
12	GO:0003987: acetate-CoA ligase activity	1.10E-04
13	GO:0004674: protein serine/threonine kinase activity	1.91E-04
14	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.57E-04
15	GO:0003979: UDP-glucose 6-dehydrogenase activity	4.25E-04
16	GO:0045548: phenylalanine ammonia-lyase activity	4.25E-04
17	GO:0052659: inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity	4.25E-04
18	GO:0016760: cellulose synthase (UDP-forming) activity	5.28E-04
19	GO:0052658: inositol-1,4,5-trisphosphate 5-phosphatase activity	6.10E-04
20	GO:0017089: glycolipid transporter activity	6.10E-04
21	GO:0004445: inositol-polyphosphate 5-phosphatase activity	6.10E-04
22	GO:0005253: anion channel activity	8.10E-04
23	GO:0051861: glycolipid binding	8.10E-04
24	GO:0043015: gamma-tubulin binding	8.10E-04
25	GO:0004843: thiol-dependent ubiquitin-specific protease activity	8.78E-04
26	GO:0004518: nuclease activity	9.34E-04
27	GO:0047631: ADP-ribose diphosphatase activity	1.02E-03
28	GO:0004356: glutamate-ammonia ligase activity	1.02E-03
29	GO:0016759: cellulose synthase activity	1.05E-03
30	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.25E-03
31	GO:0016208: AMP binding	1.25E-03
32	GO:0008375: acetylglucosaminyltransferase activity	1.39E-03
33	GO:0004012: phospholipid-translocating ATPase activity	1.49E-03
34	GO:0005524: ATP binding	1.74E-03
35	GO:0004143: diacylglycerol kinase activity	1.75E-03
36	GO:0008506: sucrose:proton symporter activity	1.75E-03
37	GO:0015140: malate transmembrane transporter activity	1.75E-03
38	GO:0052747: sinapyl alcohol dehydrogenase activity	2.03E-03
39	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	2.03E-03
40	GO:0003951: NAD+ kinase activity	2.32E-03
41	GO:0008142: oxysterol binding	2.32E-03
42	GO:0004430: 1-phosphatidylinositol 4-kinase activity	2.32E-03
43	GO:0016207: 4-coumarate-CoA ligase activity	2.62E-03
44	GO:0047617: acyl-CoA hydrolase activity	2.93E-03
45	GO:0030246: carbohydrate binding	3.06E-03
46	GO:0016757: transferase activity, transferring glycosyl groups	3.42E-03
47	GO:0008515: sucrose transmembrane transporter activity	3.59E-03
48	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.93E-03
49	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.93E-03
50	GO:0004722: protein serine/threonine phosphatase activity	3.94E-03
51	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.30E-03
52	GO:0001046: core promoter sequence-specific DNA binding	5.84E-03
53	GO:0003714: transcription corepressor activity	5.84E-03
54	GO:0019706: protein-cysteine S-palmitoyltransferase activity	6.67E-03
55	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.67E-03
56	GO:0015144: carbohydrate transmembrane transporter activity	7.45E-03
57	GO:0022891: substrate-specific transmembrane transporter activity	7.55E-03
58	GO:0005351: sugar:proton symporter activity	8.40E-03
59	GO:0008017: microtubule binding	9.00E-03
60	GO:0016853: isomerase activity	9.91E-03
61	GO:0019901: protein kinase binding	1.04E-02
62	GO:0042802: identical protein binding	1.09E-02
63	GO:0004721: phosphoprotein phosphatase activity	1.59E-02
64	GO:0030247: polysaccharide binding	1.59E-02
65	GO:0004497: monooxygenase activity	1.66E-02
66	GO:0050897: cobalt ion binding	1.89E-02
67	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.89E-02
68	GO:0004364: glutathione transferase activity	2.35E-02
69	GO:0003924: GTPase activity	2.45E-02
70	GO:0043621: protein self-association	2.56E-02
71	GO:0035091: phosphatidylinositol binding	2.56E-02
72	GO:0015293: symporter activity	2.63E-02
73	GO:0051287: NAD binding	2.77E-02
74	GO:0016874: ligase activity	3.69E-02
75	GO:0022857: transmembrane transporter activity	3.69E-02
76	GO:0003779: actin binding	3.77E-02
77	GO:0003676: nucleic acid binding	4.67E-02
78	GO:0030170: pyridoxal phosphate binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0016442: RISC complex	0.00E+00
2	GO:0005886: plasma membrane	4.20E-06
3	GO:0016021: integral component of membrane	2.61E-05
4	GO:0010494: cytoplasmic stress granule	1.03E-04
5	GO:0048471: perinuclear region of cytoplasm	1.73E-04
6	GO:0005802: trans-Golgi network	1.77E-04
7	GO:0005768: endosome	2.36E-04
8	GO:0005794: Golgi apparatus	2.95E-04
9	GO:0008287: protein serine/threonine phosphatase complex	4.25E-04
10	GO:0032580: Golgi cisterna membrane	1.05E-03
11	GO:0000932: P-body	1.25E-03
12	GO:0030173: integral component of Golgi membrane	1.49E-03
13	GO:0009514: glyoxysome	2.32E-03
14	GO:0090406: pollen tube	2.61E-03
15	GO:0090404: pollen tube tip	3.59E-03
16	GO:0005635: nuclear envelope	3.76E-03
17	GO:0010008: endosome membrane	4.28E-03
18	GO:0005938: cell cortex	4.30E-03
19	GO:0005795: Golgi stack	5.04E-03
20	GO:0009524: phragmoplast	6.56E-03
21	GO:0005741: mitochondrial outer membrane	6.67E-03
22	GO:0009505: plant-type cell wall	8.01E-03
23	GO:0030136: clathrin-coated vesicle	8.46E-03
24	GO:0009504: cell plate	1.04E-02
25	GO:0005774: vacuolar membrane	1.17E-02
26	GO:0005783: endoplasmic reticulum	1.39E-02
27	GO:0031902: late endosome membrane	2.29E-02
28	GO:0031966: mitochondrial membrane	2.85E-02
29	GO:0005834: heterotrimeric G-protein complex	3.53E-02
30	GO:0016020: membrane	3.89E-02
31	GO:0005618: cell wall	4.42E-02
32	GO:0009506: plasmodesma	4.56E-02