co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000740: nuclear membrane fusion	0.00E+00
2	GO:0045740: positive regulation of DNA replication	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0006412: translation	5.91E-36
5	GO:0042254: ribosome biogenesis	4.77E-11
6	GO:0000027: ribosomal large subunit assembly	3.25E-08
7	GO:0000028: ribosomal small subunit assembly	4.46E-06
8	GO:1902626: assembly of large subunit precursor of preribosome	9.64E-06
9	GO:2001006: regulation of cellulose biosynthetic process	2.39E-04
10	GO:0010267: production of ta-siRNAs involved in RNA interference	3.83E-04
11	GO:0006452: translational frameshifting	5.29E-04
12	GO:0010198: synergid death	5.29E-04
13	GO:0016560: protein import into peroxisome matrix, docking	5.29E-04
14	GO:0006432: phenylalanyl-tRNA aminoacylation	5.29E-04
15	GO:0045905: positive regulation of translational termination	5.29E-04
16	GO:0071668: plant-type cell wall assembly	5.29E-04
17	GO:0045901: positive regulation of translational elongation	5.29E-04
18	GO:0010102: lateral root morphogenesis	6.71E-04
19	GO:0006626: protein targeting to mitochondrion	6.71E-04
20	GO:0010039: response to iron ion	8.45E-04
21	GO:0010452: histone H3-K36 methylation	8.60E-04
22	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	8.60E-04
23	GO:1904278: positive regulation of wax biosynthetic process	8.60E-04
24	GO:0045793: positive regulation of cell size	8.60E-04
25	GO:0006760: folic acid-containing compound metabolic process	8.60E-04
26	GO:0060145: viral gene silencing in virus induced gene silencing	8.60E-04
27	GO:0009116: nucleoside metabolic process	1.04E-03
28	GO:0006406: mRNA export from nucleus	1.04E-03
29	GO:0051085: chaperone mediated protein folding requiring cofactor	1.23E-03
30	GO:0006107: oxaloacetate metabolic process	1.23E-03
31	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.23E-03
32	GO:0006168: adenine salvage	1.23E-03
33	GO:0009558: embryo sac cellularization	1.23E-03
34	GO:0032877: positive regulation of DNA endoreduplication	1.23E-03
35	GO:0006166: purine ribonucleoside salvage	1.23E-03
36	GO:0006221: pyrimidine nucleotide biosynthetic process	1.64E-03
37	GO:0006625: protein targeting to peroxisome	1.64E-03
38	GO:0044205: 'de novo' UMP biosynthetic process	1.64E-03
39	GO:0009165: nucleotide biosynthetic process	1.64E-03
40	GO:0051781: positive regulation of cell division	1.64E-03
41	GO:0044209: AMP salvage	2.09E-03
42	GO:0043248: proteasome assembly	2.57E-03
43	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.57E-03
44	GO:0034314: Arp2/3 complex-mediated actin nucleation	2.57E-03
45	GO:0006014: D-ribose metabolic process	2.57E-03
46	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	2.57E-03
47	GO:0051568: histone H3-K4 methylation	2.57E-03
48	GO:0000398: mRNA splicing, via spliceosome	2.90E-03
49	GO:0000911: cytokinesis by cell plate formation	3.09E-03
50	GO:0007050: cell cycle arrest	3.64E-03
51	GO:0006826: iron ion transport	3.64E-03
52	GO:0000082: G1/S transition of mitotic cell cycle	3.64E-03
53	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	3.64E-03
54	GO:0035196: production of miRNAs involved in gene silencing by miRNA	3.64E-03
55	GO:0032880: regulation of protein localization	3.64E-03
56	GO:0006506: GPI anchor biosynthetic process	4.23E-03
57	GO:0009690: cytokinin metabolic process	4.23E-03
58	GO:0032875: regulation of DNA endoreduplication	4.23E-03
59	GO:0022900: electron transport chain	4.84E-03
60	GO:0043562: cellular response to nitrogen levels	4.84E-03
61	GO:0009808: lignin metabolic process	4.84E-03
62	GO:0009245: lipid A biosynthetic process	5.48E-03
63	GO:0048589: developmental growth	5.48E-03
64	GO:0000387: spliceosomal snRNP assembly	6.15E-03
65	GO:0045036: protein targeting to chloroplast	6.85E-03
66	GO:0016441: posttranscriptional gene silencing	6.85E-03
67	GO:0016925: protein sumoylation	8.33E-03
68	GO:0009965: leaf morphogenesis	8.64E-03
69	GO:0006807: nitrogen compound metabolic process	9.11E-03
70	GO:0006108: malate metabolic process	9.11E-03
71	GO:0048467: gynoecium development	9.92E-03
72	GO:0010020: chloroplast fission	9.92E-03
73	GO:0007015: actin filament organization	9.92E-03
74	GO:0007031: peroxisome organization	1.07E-02
75	GO:0034976: response to endoplasmic reticulum stress	1.16E-02
76	GO:0006289: nucleotide-excision repair	1.25E-02
77	GO:0061077: chaperone-mediated protein folding	1.43E-02
78	GO:0006457: protein folding	1.51E-02
79	GO:0016226: iron-sulfur cluster assembly	1.53E-02
80	GO:0007005: mitochondrion organization	1.53E-02
81	GO:0006012: galactose metabolic process	1.62E-02
82	GO:0010089: xylem development	1.72E-02
83	GO:0009408: response to heat	1.82E-02
84	GO:0006414: translational elongation	1.87E-02
85	GO:0000413: protein peptidyl-prolyl isomerization	1.93E-02
86	GO:0008360: regulation of cell shape	2.03E-02
87	GO:0010197: polar nucleus fusion	2.03E-02
88	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.36E-02
89	GO:0031047: gene silencing by RNA	2.47E-02
90	GO:0009630: gravitropism	2.47E-02
91	GO:0010090: trichome morphogenesis	2.59E-02
92	GO:0009651: response to salt stress	2.79E-02
93	GO:0010286: heat acclimation	2.83E-02
94	GO:0000910: cytokinesis	2.95E-02
95	GO:0051607: defense response to virus	2.95E-02
96	GO:0009793: embryo development ending in seed dormancy	3.77E-02
97	GO:0010311: lateral root formation	3.84E-02
98	GO:0009631: cold acclimation	4.11E-02
99	GO:0048527: lateral root development	4.11E-02
100	GO:0009910: negative regulation of flower development	4.11E-02
101	GO:0015031: protein transport	4.15E-02
102	GO:0000724: double-strand break repair via homologous recombination	4.25E-02
103	GO:0006839: mitochondrial transport	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
3	GO:0004151: dihydroorotase activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	4.58E-49
5	GO:0003729: mRNA binding	9.70E-10
6	GO:0035614: snRNA stem-loop binding	2.39E-04
7	GO:0016817: hydrolase activity, acting on acid anhydrides	2.39E-04
8	GO:0004826: phenylalanine-tRNA ligase activity	5.29E-04
9	GO:1990585: hydroxyproline O-arabinosyltransferase activity	5.29E-04
10	GO:0030619: U1 snRNA binding	5.29E-04
11	GO:0019843: rRNA binding	5.42E-04
12	GO:0031072: heat shock protein binding	6.71E-04
13	GO:0005047: signal recognition particle binding	8.60E-04
14	GO:0070181: small ribosomal subunit rRNA binding	8.60E-04
15	GO:0003999: adenine phosphoribosyltransferase activity	1.23E-03
16	GO:0008097: 5S rRNA binding	1.23E-03
17	GO:0004749: ribose phosphate diphosphokinase activity	1.23E-03
18	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.29E-03
19	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.64E-03
20	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.64E-03
21	GO:0010011: auxin binding	1.64E-03
22	GO:0004888: transmembrane signaling receptor activity	2.09E-03
23	GO:0031386: protein tag	2.09E-03
24	GO:0022857: transmembrane transporter activity	2.24E-03
25	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.57E-03
26	GO:0031177: phosphopantetheine binding	2.57E-03
27	GO:0004747: ribokinase activity	3.09E-03
28	GO:0000035: acyl binding	3.09E-03
29	GO:0019887: protein kinase regulator activity	3.09E-03
30	GO:0042162: telomeric DNA binding	3.64E-03
31	GO:0008143: poly(A) binding	3.64E-03
32	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.23E-03
33	GO:0004034: aldose 1-epimerase activity	4.23E-03
34	GO:0043022: ribosome binding	4.23E-03
35	GO:0035064: methylated histone binding	4.23E-03
36	GO:0050897: cobalt ion binding	5.43E-03
37	GO:0003746: translation elongation factor activity	5.96E-03
38	GO:0008794: arsenate reductase (glutaredoxin) activity	7.58E-03
39	GO:0000049: tRNA binding	8.33E-03
40	GO:0003725: double-stranded RNA binding	9.11E-03
41	GO:0000166: nucleotide binding	1.02E-02
42	GO:0003723: RNA binding	1.17E-02
43	GO:0043130: ubiquitin binding	1.25E-02
44	GO:0005528: FK506 binding	1.25E-02
45	GO:0003714: transcription corepressor activity	1.25E-02
46	GO:0051082: unfolded protein binding	1.48E-02
47	GO:0003756: protein disulfide isomerase activity	1.72E-02
48	GO:0005102: receptor binding	1.82E-02
49	GO:0005515: protein binding	1.84E-02
50	GO:0004872: receptor activity	2.25E-02
51	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.36E-02
52	GO:0051015: actin filament binding	2.59E-02
53	GO:0016597: amino acid binding	2.95E-02
54	GO:0008375: acetylglucosaminyltransferase activity	3.32E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.71E-02
56	GO:0003697: single-stranded DNA binding	4.39E-02
57	GO:0042393: histone binding	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0005675: holo TFIIH complex	0.00E+00
3	GO:0005840: ribosome	2.00E-34
4	GO:0022626: cytosolic ribosome	1.75E-33
5	GO:0022625: cytosolic large ribosomal subunit	1.47E-28
6	GO:0022627: cytosolic small ribosomal subunit	1.58E-20
7	GO:0005829: cytosol	1.81E-16
8	GO:0005730: nucleolus	1.55E-13
9	GO:0005737: cytoplasm	4.59E-10
10	GO:0009506: plasmodesma	2.07E-06
11	GO:0005774: vacuolar membrane	1.59E-04
12	GO:0016020: membrane	1.69E-04
13	GO:1990429: peroxisomal importomer complex	2.39E-04
14	GO:0005732: small nucleolar ribonucleoprotein complex	4.37E-04
15	GO:0005697: telomerase holoenzyme complex	5.29E-04
16	GO:0000439: core TFIIH complex	8.60E-04
17	GO:0005853: eukaryotic translation elongation factor 1 complex	8.60E-04
18	GO:1990726: Lsm1-7-Pat1 complex	1.23E-03
19	GO:0015935: small ribosomal subunit	1.25E-03
20	GO:0016593: Cdc73/Paf1 complex	1.64E-03
21	GO:0000445: THO complex part of transcription export complex	1.64E-03
22	GO:0005762: mitochondrial large ribosomal subunit	3.09E-03
23	GO:0005801: cis-Golgi network	3.09E-03
24	GO:0005885: Arp2/3 protein complex	3.09E-03
25	GO:0000347: THO complex	3.64E-03
26	GO:0005788: endoplasmic reticulum lumen	3.81E-03
27	GO:0005688: U6 snRNP	4.23E-03
28	GO:0046540: U4/U6 x U5 tri-snRNP complex	4.84E-03
29	GO:0015934: large ribosomal subunit	5.43E-03
30	GO:0005685: U1 snRNP	5.48E-03
31	GO:0005763: mitochondrial small ribosomal subunit	5.48E-03
32	GO:0071011: precatalytic spliceosome	6.15E-03
33	GO:0008541: proteasome regulatory particle, lid subcomplex	7.58E-03
34	GO:0071013: catalytic step 2 spliceosome	7.58E-03
35	GO:0019013: viral nucleocapsid	9.11E-03
36	GO:0009508: plastid chromosome	9.11E-03
37	GO:0000502: proteasome complex	1.04E-02
38	GO:0005773: vacuole	1.13E-02
39	GO:0005758: mitochondrial intermembrane space	1.25E-02
40	GO:0005834: heterotrimeric G-protein complex	1.31E-02
41	GO:0009507: chloroplast	1.33E-02
42	GO:0070469: respiratory chain	1.34E-02
43	GO:0005741: mitochondrial outer membrane	1.43E-02
44	GO:0009706: chloroplast inner membrane	1.48E-02
45	GO:0005618: cell wall	1.51E-02
46	GO:0005743: mitochondrial inner membrane	1.66E-02
47	GO:0005759: mitochondrial matrix	2.33E-02
48	GO:0009295: nucleoid	2.83E-02
49	GO:0005778: peroxisomal membrane	2.83E-02
50	GO:0005886: plasma membrane	3.07E-02
51	GO:0000932: P-body	3.07E-02
52	GO:0009707: chloroplast outer membrane	3.71E-02
53	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.34E-02