co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G75350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0061635: regulation of protein complex stability	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
5	GO:0005996: monosaccharide metabolic process	0.00E+00
6	GO:0090042: tubulin deacetylation	0.00E+00
7	GO:0006114: glycerol biosynthetic process	0.00E+00
8	GO:0017038: protein import	0.00E+00
9	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
10	GO:0015979: photosynthesis	8.91E-20
11	GO:0032544: plastid translation	2.55E-17
12	GO:0006412: translation	1.46E-14
13	GO:0010027: thylakoid membrane organization	3.44E-13
14	GO:0009773: photosynthetic electron transport in photosystem I	4.82E-09
15	GO:0010196: nonphotochemical quenching	2.71E-08
16	GO:0009735: response to cytokinin	2.81E-07
17	GO:0009658: chloroplast organization	4.47E-07
18	GO:0042254: ribosome biogenesis	4.80E-07
19	GO:0015995: chlorophyll biosynthetic process	2.42E-06
20	GO:0045037: protein import into chloroplast stroma	3.07E-05
21	GO:0009409: response to cold	3.15E-05
22	GO:0019464: glycine decarboxylation via glycine cleavage system	4.46E-05
23	GO:0006109: regulation of carbohydrate metabolic process	4.46E-05
24	GO:0006546: glycine catabolic process	4.46E-05
25	GO:0009768: photosynthesis, light harvesting in photosystem I	9.04E-05
26	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.04E-04
27	GO:0006438: valyl-tRNA aminoacylation	2.55E-04
28	GO:0043007: maintenance of rDNA	2.55E-04
29	GO:1902458: positive regulation of stomatal opening	2.55E-04
30	GO:0019388: galactose catabolic process	5.64E-04
31	GO:0018026: peptidyl-lysine monomethylation	5.64E-04
32	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.64E-04
33	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.64E-04
34	GO:0043085: positive regulation of catalytic activity	5.68E-04
35	GO:0018298: protein-chromophore linkage	6.53E-04
36	GO:0010207: photosystem II assembly	8.30E-04
37	GO:0006000: fructose metabolic process	9.15E-04
38	GO:0090391: granum assembly	9.15E-04
39	GO:0006518: peptide metabolic process	9.15E-04
40	GO:0071492: cellular response to UV-A	9.15E-04
41	GO:0016050: vesicle organization	9.15E-04
42	GO:0006418: tRNA aminoacylation for protein translation	1.25E-03
43	GO:0051085: chaperone mediated protein folding requiring cofactor	1.31E-03
44	GO:0009590: detection of gravity	1.31E-03
45	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.31E-03
46	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.31E-03
47	GO:0061077: chaperone-mediated protein folding	1.37E-03
48	GO:0045727: positive regulation of translation	1.75E-03
49	GO:0015994: chlorophyll metabolic process	1.75E-03
50	GO:0006808: regulation of nitrogen utilization	1.75E-03
51	GO:0010109: regulation of photosynthesis	1.75E-03
52	GO:0015976: carbon utilization	1.75E-03
53	GO:0071486: cellular response to high light intensity	1.75E-03
54	GO:0000304: response to singlet oxygen	2.23E-03
55	GO:0032543: mitochondrial translation	2.23E-03
56	GO:0010236: plastoquinone biosynthetic process	2.23E-03
57	GO:0045038: protein import into chloroplast thylakoid membrane	2.23E-03
58	GO:0006461: protein complex assembly	2.23E-03
59	GO:0006662: glycerol ether metabolic process	2.24E-03
60	GO:0000470: maturation of LSU-rRNA	2.75E-03
61	GO:0042793: transcription from plastid promoter	2.75E-03
62	GO:0010190: cytochrome b6f complex assembly	2.75E-03
63	GO:0042549: photosystem II stabilization	2.75E-03
64	GO:0009955: adaxial/abaxial pattern specification	3.30E-03
65	GO:0042026: protein refolding	3.30E-03
66	GO:1901259: chloroplast rRNA processing	3.30E-03
67	GO:0010189: vitamin E biosynthetic process	3.30E-03
68	GO:0045454: cell redox homeostasis	3.61E-03
69	GO:0071446: cellular response to salicylic acid stimulus	3.89E-03
70	GO:0009645: response to low light intensity stimulus	3.89E-03
71	GO:0009790: embryo development	4.44E-03
72	GO:0005978: glycogen biosynthetic process	4.52E-03
73	GO:0009642: response to light intensity	4.52E-03
74	GO:0006875: cellular metal ion homeostasis	4.52E-03
75	GO:0006605: protein targeting	4.52E-03
76	GO:2000070: regulation of response to water deprivation	4.52E-03
77	GO:0000105: histidine biosynthetic process	4.52E-03
78	GO:0006002: fructose 6-phosphate metabolic process	5.18E-03
79	GO:0015996: chlorophyll catabolic process	5.18E-03
80	GO:0009817: defense response to fungus, incompatible interaction	5.18E-03
81	GO:0007186: G-protein coupled receptor signaling pathway	5.18E-03
82	GO:0009657: plastid organization	5.18E-03
83	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.18E-03
84	GO:0010206: photosystem II repair	5.86E-03
85	GO:0010205: photoinhibition	6.58E-03
86	GO:0006779: porphyrin-containing compound biosynthetic process	6.58E-03
87	GO:0034599: cellular response to oxidative stress	6.86E-03
88	GO:0006810: transport	6.92E-03
89	GO:0006782: protoporphyrinogen IX biosynthetic process	7.33E-03
90	GO:0019684: photosynthesis, light reaction	8.11E-03
91	GO:0006415: translational termination	8.11E-03
92	GO:0009089: lysine biosynthetic process via diaminopimelate	8.11E-03
93	GO:0009073: aromatic amino acid family biosynthetic process	8.11E-03
94	GO:0000272: polysaccharide catabolic process	8.11E-03
95	GO:0018119: peptidyl-cysteine S-nitrosylation	8.11E-03
96	GO:0005983: starch catabolic process	8.92E-03
97	GO:0009644: response to high light intensity	9.16E-03
98	GO:0005986: sucrose biosynthetic process	9.75E-03
99	GO:0006006: glucose metabolic process	9.75E-03
100	GO:0006094: gluconeogenesis	9.75E-03
101	GO:0019253: reductive pentose-phosphate cycle	1.06E-02
102	GO:0006364: rRNA processing	1.14E-02
103	GO:0005985: sucrose metabolic process	1.15E-02
104	GO:0000162: tryptophan biosynthetic process	1.24E-02
105	GO:0006636: unsaturated fatty acid biosynthetic process	1.24E-02
106	GO:0000027: ribosomal large subunit assembly	1.34E-02
107	GO:0043086: negative regulation of catalytic activity	1.35E-02
108	GO:0016575: histone deacetylation	1.43E-02
109	GO:0019915: lipid storage	1.53E-02
110	GO:0048278: vesicle docking	1.53E-02
111	GO:0031408: oxylipin biosynthetic process	1.53E-02
112	GO:0016114: terpenoid biosynthetic process	1.53E-02
113	GO:0007005: mitochondrion organization	1.64E-02
114	GO:0009793: embryo development ending in seed dormancy	1.67E-02
115	GO:0009561: megagametogenesis	1.85E-02
116	GO:0042631: cellular response to water deprivation	2.07E-02
117	GO:0010182: sugar mediated signaling pathway	2.18E-02
118	GO:0009646: response to absence of light	2.29E-02
119	GO:0061025: membrane fusion	2.29E-02
120	GO:0019252: starch biosynthetic process	2.41E-02
121	GO:0006633: fatty acid biosynthetic process	2.57E-02
122	GO:0010583: response to cyclopentenone	2.65E-02
123	GO:0010090: trichome morphogenesis	2.78E-02
124	GO:0042742: defense response to bacterium	3.38E-02
125	GO:0006906: vesicle fusion	3.56E-02
126	GO:0009627: systemic acquired resistance	3.56E-02
127	GO:0016311: dephosphorylation	3.83E-02
128	GO:0008219: cell death	3.97E-02
129	GO:0009813: flavonoid biosynthetic process	4.12E-02
130	GO:0006499: N-terminal protein myristoylation	4.26E-02
131	GO:0010218: response to far red light	4.26E-02
132	GO:0009853: photorespiration	4.70E-02
133	GO:0009637: response to blue light	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
5	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
6	GO:0051721: protein phosphatase 2A binding	0.00E+00
7	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0042903: tubulin deacetylase activity	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
12	GO:0043014: alpha-tubulin binding	0.00E+00
13	GO:0004823: leucine-tRNA ligase activity	0.00E+00
14	GO:0046408: chlorophyll synthetase activity	0.00E+00
15	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
16	GO:0051738: xanthophyll binding	0.00E+00
17	GO:0019843: rRNA binding	3.05E-24
18	GO:0003735: structural constituent of ribosome	8.56E-16
19	GO:0005528: FK506 binding	4.24E-08
20	GO:0016168: chlorophyll binding	1.82E-06
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.65E-05
22	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.46E-05
23	GO:0031409: pigment binding	6.61E-05
24	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.55E-04
25	GO:0050308: sugar-phosphatase activity	2.55E-04
26	GO:0045485: omega-6 fatty acid desaturase activity	2.55E-04
27	GO:0019203: carbohydrate phosphatase activity	2.55E-04
28	GO:0015088: copper uptake transmembrane transporter activity	2.55E-04
29	GO:0004832: valine-tRNA ligase activity	2.55E-04
30	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.55E-04
31	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.55E-04
32	GO:0051082: unfolded protein binding	4.45E-04
33	GO:0008047: enzyme activator activity	4.92E-04
34	GO:0004047: aminomethyltransferase activity	5.64E-04
35	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.64E-04
36	GO:0008967: phosphoglycolate phosphatase activity	5.64E-04
37	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	5.64E-04
38	GO:0004614: phosphoglucomutase activity	5.64E-04
39	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.64E-04
40	GO:0047746: chlorophyllase activity	5.64E-04
41	GO:0010297: heteropolysaccharide binding	5.64E-04
42	GO:0031072: heat shock protein binding	7.37E-04
43	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.15E-04
44	GO:0017150: tRNA dihydrouridine synthase activity	9.15E-04
45	GO:0002161: aminoacyl-tRNA editing activity	9.15E-04
46	GO:0005504: fatty acid binding	9.15E-04
47	GO:0004857: enzyme inhibitor activity	1.14E-03
48	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.31E-03
49	GO:0016851: magnesium chelatase activity	1.31E-03
50	GO:0048487: beta-tubulin binding	1.31E-03
51	GO:0016149: translation release factor activity, codon specific	1.31E-03
52	GO:0043023: ribosomal large subunit binding	1.31E-03
53	GO:0022891: substrate-specific transmembrane transporter activity	1.63E-03
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.75E-03
55	GO:0045430: chalcone isomerase activity	1.75E-03
56	GO:0016279: protein-lysine N-methyltransferase activity	1.75E-03
57	GO:0047134: protein-disulfide reductase activity	1.92E-03
58	GO:0004812: aminoacyl-tRNA ligase activity	1.92E-03
59	GO:0004040: amidase activity	2.23E-03
60	GO:0004791: thioredoxin-disulfide reductase activity	2.40E-03
61	GO:2001070: starch binding	2.75E-03
62	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.13E-03
63	GO:0051920: peroxiredoxin activity	3.30E-03
64	GO:0008483: transaminase activity	3.54E-03
65	GO:0004033: aldo-keto reductase (NADP) activity	4.52E-03
66	GO:0016209: antioxidant activity	4.52E-03
67	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.18E-03
68	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.86E-03
69	GO:0003747: translation release factor activity	5.86E-03
70	GO:0005381: iron ion transmembrane transporter activity	6.58E-03
71	GO:0044183: protein binding involved in protein folding	8.11E-03
72	GO:0000287: magnesium ion binding	9.35E-03
73	GO:0004565: beta-galactosidase activity	9.75E-03
74	GO:0004089: carbonate dehydratase activity	9.75E-03
75	GO:0008266: poly(U) RNA binding	1.06E-02
76	GO:0004407: histone deacetylase activity	1.34E-02
77	GO:0015035: protein disulfide oxidoreductase activity	1.68E-02
78	GO:0016491: oxidoreductase activity	1.73E-02
79	GO:0030570: pectate lyase activity	1.74E-02
80	GO:0003756: protein disulfide isomerase activity	1.85E-02
81	GO:0050662: coenzyme binding	2.29E-02
82	GO:0048038: quinone binding	2.53E-02
83	GO:0005509: calcium ion binding	3.01E-02
84	GO:0003723: RNA binding	3.34E-02
85	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.83E-02
86	GO:0016787: hydrolase activity	3.91E-02
87	GO:0008168: methyltransferase activity	4.20E-02
88	GO:0004222: metalloendopeptidase activity	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	1.20E-92
4	GO:0009570: chloroplast stroma	2.56E-57
5	GO:0009535: chloroplast thylakoid membrane	4.97E-53
6	GO:0009534: chloroplast thylakoid	2.25E-49
7	GO:0009941: chloroplast envelope	3.59E-48
8	GO:0009579: thylakoid	5.24E-33
9	GO:0005840: ribosome	6.80E-20
10	GO:0009543: chloroplast thylakoid lumen	4.51E-19
11	GO:0031977: thylakoid lumen	2.11E-13
12	GO:0010319: stromule	6.66E-10
13	GO:0030095: chloroplast photosystem II	1.59E-08
14	GO:0009706: chloroplast inner membrane	2.01E-07
15	GO:0010287: plastoglobule	3.70E-07
16	GO:0009654: photosystem II oxygen evolving complex	2.99E-06
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.02E-06
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.07E-05
19	GO:0009523: photosystem II	1.50E-05
20	GO:0019898: extrinsic component of membrane	1.50E-05
21	GO:0005960: glycine cleavage complex	2.46E-05
22	GO:0009508: plastid chromosome	3.79E-05
23	GO:0016020: membrane	5.32E-05
24	GO:0009522: photosystem I	2.37E-04
25	GO:0009538: photosystem I reaction center	2.38E-04
26	GO:0009782: photosystem I antenna complex	2.55E-04
27	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.55E-04
28	GO:0009783: photosystem II antenna complex	2.55E-04
29	GO:0009515: granal stacked thylakoid	2.55E-04
30	GO:0009547: plastid ribosome	2.55E-04
31	GO:0009295: nucleoid	4.00E-04
32	GO:0009536: plastid	4.40E-04
33	GO:0022626: cytosolic ribosome	7.40E-04
34	GO:0048046: apoplast	7.84E-04
35	GO:0015934: large ribosomal subunit	7.84E-04
36	GO:0009528: plastid inner membrane	9.15E-04
37	GO:0010007: magnesium chelatase complex	9.15E-04
38	GO:0030076: light-harvesting complex	9.26E-04
39	GO:0042651: thylakoid membrane	1.25E-03
40	GO:0015935: small ribosomal subunit	1.37E-03
41	GO:0009532: plastid stroma	1.37E-03
42	GO:0009517: PSII associated light-harvesting complex II	1.75E-03
43	GO:0031897: Tic complex	1.75E-03
44	GO:0009527: plastid outer membrane	1.75E-03
45	GO:0009840: chloroplastic endopeptidase Clp complex	3.30E-03
46	GO:0016272: prefoldin complex	3.30E-03
47	GO:0009533: chloroplast stromal thylakoid	3.89E-03
48	GO:0005763: mitochondrial small ribosomal subunit	5.86E-03
49	GO:0000311: plastid large ribosomal subunit	8.92E-03
50	GO:0000312: plastid small ribosomal subunit	1.06E-02
51	GO:0043234: protein complex	1.24E-02
52	GO:0031969: chloroplast membrane	1.26E-02
53	GO:0022625: cytosolic large ribosomal subunit	1.34E-02
54	GO:0005623: cell	2.10E-02
55	GO:0009504: cell plate	2.41E-02
56	GO:0009707: chloroplast outer membrane	3.97E-02