GO Enrichment Analysis of Co-expressed Genes with
AT1G75100
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015843: methylammonium transport | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 4 | GO:0009661: chromoplast organization | 0.00E+00 |
| 5 | GO:0010243: response to organonitrogen compound | 0.00E+00 |
| 6 | GO:0042754: negative regulation of circadian rhythm | 1.05E-06 |
| 7 | GO:0010100: negative regulation of photomorphogenesis | 1.93E-06 |
| 8 | GO:2001141: regulation of RNA biosynthetic process | 9.15E-06 |
| 9 | GO:0071483: cellular response to blue light | 1.71E-05 |
| 10 | GO:0009902: chloroplast relocation | 1.71E-05 |
| 11 | GO:0016120: carotene biosynthetic process | 2.79E-05 |
| 12 | GO:0010236: plastoquinone biosynthetic process | 2.79E-05 |
| 13 | GO:0007623: circadian rhythm | 3.02E-05 |
| 14 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 4.18E-05 |
| 15 | GO:0009909: regulation of flower development | 7.52E-05 |
| 16 | GO:0009658: chloroplast organization | 8.01E-05 |
| 17 | GO:0048574: long-day photoperiodism, flowering | 1.27E-04 |
| 18 | GO:0071461: cellular response to redox state | 1.46E-04 |
| 19 | GO:0010036: response to boron-containing substance | 1.46E-04 |
| 20 | GO:1902265: abscisic acid homeostasis | 1.46E-04 |
| 21 | GO:0046467: membrane lipid biosynthetic process | 1.46E-04 |
| 22 | GO:0015995: chlorophyll biosynthetic process | 2.03E-04 |
| 23 | GO:0006352: DNA-templated transcription, initiation | 2.59E-04 |
| 24 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.33E-04 |
| 25 | GO:0042550: photosystem I stabilization | 3.33E-04 |
| 26 | GO:0080183: response to photooxidative stress | 3.33E-04 |
| 27 | GO:0043100: pyrimidine nucleobase salvage | 3.33E-04 |
| 28 | GO:0010343: singlet oxygen-mediated programmed cell death | 3.33E-04 |
| 29 | GO:0043496: regulation of protein homodimerization activity | 3.33E-04 |
| 30 | GO:0080005: photosystem stoichiometry adjustment | 3.33E-04 |
| 31 | GO:0007154: cell communication | 3.33E-04 |
| 32 | GO:0010207: photosystem II assembly | 3.85E-04 |
| 33 | GO:0009640: photomorphogenesis | 4.47E-04 |
| 34 | GO:0044375: regulation of peroxisome size | 5.47E-04 |
| 35 | GO:0031022: nuclear migration along microfilament | 5.47E-04 |
| 36 | GO:0019419: sulfate reduction | 5.47E-04 |
| 37 | GO:1901562: response to paraquat | 5.47E-04 |
| 38 | GO:0006696: ergosterol biosynthetic process | 5.47E-04 |
| 39 | GO:0008299: isoprenoid biosynthetic process | 5.87E-04 |
| 40 | GO:0046713: borate transport | 7.83E-04 |
| 41 | GO:0010371: regulation of gibberellin biosynthetic process | 7.83E-04 |
| 42 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.83E-04 |
| 43 | GO:0015696: ammonium transport | 7.83E-04 |
| 44 | GO:0016117: carotenoid biosynthetic process | 8.94E-04 |
| 45 | GO:0072488: ammonium transmembrane transport | 1.04E-03 |
| 46 | GO:0071585: detoxification of cadmium ion | 1.04E-03 |
| 47 | GO:0010021: amylopectin biosynthetic process | 1.04E-03 |
| 48 | GO:0000304: response to singlet oxygen | 1.31E-03 |
| 49 | GO:0006555: methionine metabolic process | 1.61E-03 |
| 50 | GO:0048317: seed morphogenesis | 1.61E-03 |
| 51 | GO:0071805: potassium ion transmembrane transport | 1.62E-03 |
| 52 | GO:0010019: chloroplast-nucleus signaling pathway | 1.93E-03 |
| 53 | GO:0009648: photoperiodism | 1.93E-03 |
| 54 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.93E-03 |
| 55 | GO:0080060: integument development | 1.93E-03 |
| 56 | GO:0009903: chloroplast avoidance movement | 1.93E-03 |
| 57 | GO:0010189: vitamin E biosynthetic process | 1.93E-03 |
| 58 | GO:0045995: regulation of embryonic development | 2.27E-03 |
| 59 | GO:0070370: cellular heat acclimation | 2.27E-03 |
| 60 | GO:0050821: protein stabilization | 2.63E-03 |
| 61 | GO:0009231: riboflavin biosynthetic process | 2.63E-03 |
| 62 | GO:0016559: peroxisome fission | 2.63E-03 |
| 63 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 2.63E-03 |
| 64 | GO:0030091: protein repair | 2.63E-03 |
| 65 | GO:0019375: galactolipid biosynthetic process | 2.63E-03 |
| 66 | GO:0009637: response to blue light | 2.98E-03 |
| 67 | GO:0009932: cell tip growth | 3.00E-03 |
| 68 | GO:0071482: cellular response to light stimulus | 3.00E-03 |
| 69 | GO:0015996: chlorophyll catabolic process | 3.00E-03 |
| 70 | GO:0010206: photosystem II repair | 3.40E-03 |
| 71 | GO:0034765: regulation of ion transmembrane transport | 3.40E-03 |
| 72 | GO:0051453: regulation of intracellular pH | 3.81E-03 |
| 73 | GO:0010205: photoinhibition | 3.81E-03 |
| 74 | GO:0009641: shade avoidance | 4.23E-03 |
| 75 | GO:0009970: cellular response to sulfate starvation | 4.23E-03 |
| 76 | GO:0006995: cellular response to nitrogen starvation | 4.23E-03 |
| 77 | GO:0000103: sulfate assimilation | 4.23E-03 |
| 78 | GO:0045893: positive regulation of transcription, DNA-templated | 4.34E-03 |
| 79 | GO:0016485: protein processing | 4.67E-03 |
| 80 | GO:0008285: negative regulation of cell proliferation | 4.67E-03 |
| 81 | GO:0043085: positive regulation of catalytic activity | 4.67E-03 |
| 82 | GO:0009767: photosynthetic electron transport chain | 5.60E-03 |
| 83 | GO:0009785: blue light signaling pathway | 5.60E-03 |
| 84 | GO:0030048: actin filament-based movement | 5.60E-03 |
| 85 | GO:0045454: cell redox homeostasis | 5.73E-03 |
| 86 | GO:0006508: proteolysis | 6.05E-03 |
| 87 | GO:0010223: secondary shoot formation | 6.09E-03 |
| 88 | GO:0007031: peroxisome organization | 6.59E-03 |
| 89 | GO:0006071: glycerol metabolic process | 7.10E-03 |
| 90 | GO:0009624: response to nematode | 7.32E-03 |
| 91 | GO:0019344: cysteine biosynthetic process | 7.63E-03 |
| 92 | GO:0051017: actin filament bundle assembly | 7.63E-03 |
| 93 | GO:0009753: response to jasmonic acid | 8.18E-03 |
| 94 | GO:0010073: meristem maintenance | 8.18E-03 |
| 95 | GO:0031408: oxylipin biosynthetic process | 8.73E-03 |
| 96 | GO:0010017: red or far-red light signaling pathway | 9.30E-03 |
| 97 | GO:0010227: floral organ abscission | 9.89E-03 |
| 98 | GO:0009693: ethylene biosynthetic process | 9.89E-03 |
| 99 | GO:0006817: phosphate ion transport | 1.05E-02 |
| 100 | GO:0042391: regulation of membrane potential | 1.17E-02 |
| 101 | GO:0010182: sugar mediated signaling pathway | 1.24E-02 |
| 102 | GO:0009741: response to brassinosteroid | 1.24E-02 |
| 103 | GO:0006520: cellular amino acid metabolic process | 1.24E-02 |
| 104 | GO:0055114: oxidation-reduction process | 1.25E-02 |
| 105 | GO:0042752: regulation of circadian rhythm | 1.30E-02 |
| 106 | GO:0010228: vegetative to reproductive phase transition of meristem | 1.33E-02 |
| 107 | GO:0019252: starch biosynthetic process | 1.37E-02 |
| 108 | GO:0009739: response to gibberellin | 1.42E-02 |
| 109 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.43E-02 |
| 110 | GO:0009416: response to light stimulus | 1.55E-02 |
| 111 | GO:0006355: regulation of transcription, DNA-templated | 1.58E-02 |
| 112 | GO:0009409: response to cold | 1.62E-02 |
| 113 | GO:0009567: double fertilization forming a zygote and endosperm | 1.64E-02 |
| 114 | GO:0006464: cellular protein modification process | 1.64E-02 |
| 115 | GO:0035556: intracellular signal transduction | 1.66E-02 |
| 116 | GO:0010027: thylakoid membrane organization | 1.86E-02 |
| 117 | GO:0010029: regulation of seed germination | 1.94E-02 |
| 118 | GO:0008219: cell death | 2.25E-02 |
| 119 | GO:0018298: protein-chromophore linkage | 2.25E-02 |
| 120 | GO:0009723: response to ethylene | 2.28E-02 |
| 121 | GO:0006811: ion transport | 2.41E-02 |
| 122 | GO:0010218: response to far red light | 2.41E-02 |
| 123 | GO:0010043: response to zinc ion | 2.49E-02 |
| 124 | GO:0007568: aging | 2.49E-02 |
| 125 | GO:0009867: jasmonic acid mediated signaling pathway | 2.66E-02 |
| 126 | GO:0034599: cellular response to oxidative stress | 2.75E-02 |
| 127 | GO:0015979: photosynthesis | 2.79E-02 |
| 128 | GO:0045892: negative regulation of transcription, DNA-templated | 2.97E-02 |
| 129 | GO:0042542: response to hydrogen peroxide | 3.10E-02 |
| 130 | GO:0009737: response to abscisic acid | 3.17E-02 |
| 131 | GO:0010114: response to red light | 3.19E-02 |
| 132 | GO:0006351: transcription, DNA-templated | 3.24E-02 |
| 133 | GO:0009751: response to salicylic acid | 3.55E-02 |
| 134 | GO:0009408: response to heat | 3.60E-02 |
| 135 | GO:0042538: hyperosmotic salinity response | 3.75E-02 |
| 136 | GO:0009809: lignin biosynthetic process | 3.94E-02 |
| 137 | GO:0009585: red, far-red light phototransduction | 3.94E-02 |
| 138 | GO:0006813: potassium ion transport | 3.94E-02 |
| 139 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.04E-02 |
| 140 | GO:0010224: response to UV-B | 4.04E-02 |
| 141 | GO:0009733: response to auxin | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047501: (+)-neomenthol dehydrogenase activity | 0.00E+00 |
| 2 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 3 | GO:0050342: tocopherol O-methyltransferase activity | 0.00E+00 |
| 4 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 5 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 6 | GO:0015205: nucleobase transmembrane transporter activity | 0.00E+00 |
| 7 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 8 | GO:0047504: (-)-menthol dehydrogenase activity | 0.00E+00 |
| 9 | GO:0050347: trans-octaprenyltranstransferase activity | 1.05E-06 |
| 10 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 1.05E-06 |
| 11 | GO:0000989: transcription factor activity, transcription factor binding | 2.73E-06 |
| 12 | GO:0008106: alcohol dehydrogenase (NADP+) activity | 9.15E-06 |
| 13 | GO:0001053: plastid sigma factor activity | 1.71E-05 |
| 14 | GO:0016987: sigma factor activity | 1.71E-05 |
| 15 | GO:0004176: ATP-dependent peptidase activity | 3.11E-05 |
| 16 | GO:0008237: metallopeptidase activity | 1.36E-04 |
| 17 | GO:0004328: formamidase activity | 1.46E-04 |
| 18 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.46E-04 |
| 19 | GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity | 1.46E-04 |
| 20 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.46E-04 |
| 21 | GO:0046480: galactolipid galactosyltransferase activity | 1.46E-04 |
| 22 | GO:0046906: tetrapyrrole binding | 1.46E-04 |
| 23 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 1.46E-04 |
| 24 | GO:0051996: squalene synthase activity | 1.46E-04 |
| 25 | GO:0080139: borate efflux transmembrane transporter activity | 1.46E-04 |
| 26 | GO:0016783: sulfurtransferase activity | 1.46E-04 |
| 27 | GO:0046481: digalactosyldiacylglycerol synthase activity | 1.46E-04 |
| 28 | GO:0019904: protein domain specific binding | 2.59E-04 |
| 29 | GO:0004222: metalloendopeptidase activity | 2.67E-04 |
| 30 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 3.33E-04 |
| 31 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 3.33E-04 |
| 32 | GO:0033201: alpha-1,4-glucan synthase activity | 3.33E-04 |
| 33 | GO:0004046: aminoacylase activity | 3.33E-04 |
| 34 | GO:0009973: adenylyl-sulfate reductase activity | 3.33E-04 |
| 35 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 3.33E-04 |
| 36 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.33E-04 |
| 37 | GO:0042802: identical protein binding | 4.39E-04 |
| 38 | GO:0004180: carboxypeptidase activity | 5.47E-04 |
| 39 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 5.47E-04 |
| 40 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 5.47E-04 |
| 41 | GO:0004373: glycogen (starch) synthase activity | 5.47E-04 |
| 42 | GO:0003913: DNA photolyase activity | 5.47E-04 |
| 43 | GO:0004557: alpha-galactosidase activity | 5.47E-04 |
| 44 | GO:0003935: GTP cyclohydrolase II activity | 5.47E-04 |
| 45 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 5.47E-04 |
| 46 | GO:0004096: catalase activity | 5.47E-04 |
| 47 | GO:0016887: ATPase activity | 6.09E-04 |
| 48 | GO:0035250: UDP-galactosyltransferase activity | 7.83E-04 |
| 49 | GO:0004792: thiosulfate sulfurtransferase activity | 7.83E-04 |
| 50 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 7.83E-04 |
| 51 | GO:0046715: borate transmembrane transporter activity | 7.83E-04 |
| 52 | GO:0009011: starch synthase activity | 1.04E-03 |
| 53 | GO:0015301: anion:anion antiporter activity | 1.31E-03 |
| 54 | GO:0005452: inorganic anion exchanger activity | 1.31E-03 |
| 55 | GO:0008519: ammonium transmembrane transporter activity | 1.61E-03 |
| 56 | GO:0004709: MAP kinase kinase kinase activity | 1.61E-03 |
| 57 | GO:0000293: ferric-chelate reductase activity | 1.61E-03 |
| 58 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 1.61E-03 |
| 59 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.65E-03 |
| 60 | GO:0005242: inward rectifier potassium channel activity | 1.93E-03 |
| 61 | GO:0008236: serine-type peptidase activity | 2.24E-03 |
| 62 | GO:0009881: photoreceptor activity | 2.27E-03 |
| 63 | GO:0019899: enzyme binding | 2.27E-03 |
| 64 | GO:0030674: protein binding, bridging | 2.63E-03 |
| 65 | GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity | 2.63E-03 |
| 66 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 3.40E-03 |
| 67 | GO:0016491: oxidoreductase activity | 4.30E-03 |
| 68 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.15E-03 |
| 69 | GO:0031072: heat shock protein binding | 5.60E-03 |
| 70 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 5.60E-03 |
| 71 | GO:0005315: inorganic phosphate transmembrane transporter activity | 5.60E-03 |
| 72 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 6.09E-03 |
| 73 | GO:0008270: zinc ion binding | 7.30E-03 |
| 74 | GO:0015079: potassium ion transmembrane transporter activity | 8.18E-03 |
| 75 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 9.42E-03 |
| 76 | GO:0005249: voltage-gated potassium channel activity | 1.17E-02 |
| 77 | GO:0030551: cyclic nucleotide binding | 1.17E-02 |
| 78 | GO:0004527: exonuclease activity | 1.24E-02 |
| 79 | GO:0008080: N-acetyltransferase activity | 1.24E-02 |
| 80 | GO:0010181: FMN binding | 1.30E-02 |
| 81 | GO:0048038: quinone binding | 1.43E-02 |
| 82 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.57E-02 |
| 83 | GO:0016791: phosphatase activity | 1.64E-02 |
| 84 | GO:0008483: transaminase activity | 1.72E-02 |
| 85 | GO:0004672: protein kinase activity | 1.83E-02 |
| 86 | GO:0030247: polysaccharide binding | 2.09E-02 |
| 87 | GO:0004721: phosphoprotein phosphatase activity | 2.09E-02 |
| 88 | GO:0005515: protein binding | 2.14E-02 |
| 89 | GO:0030145: manganese ion binding | 2.49E-02 |
| 90 | GO:0050897: cobalt ion binding | 2.49E-02 |
| 91 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 2.66E-02 |
| 92 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 2.83E-02 |
| 93 | GO:0004871: signal transducer activity | 3.06E-02 |
| 94 | GO:0004185: serine-type carboxypeptidase activity | 3.19E-02 |
| 95 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.37E-02 |
| 96 | GO:0015293: symporter activity | 3.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.13E-10 |
| 2 | GO:0031969: chloroplast membrane | 1.25E-05 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 5.52E-05 |
| 4 | GO:0043674: columella | 1.46E-04 |
| 5 | GO:0016328: lateral plasma membrane | 5.47E-04 |
| 6 | GO:0042651: thylakoid membrane | 5.87E-04 |
| 7 | GO:0005777: peroxisome | 9.83E-04 |
| 8 | GO:0009536: plastid | 9.93E-04 |
| 9 | GO:0009526: plastid envelope | 1.04E-03 |
| 10 | GO:0010287: plastoglobule | 1.25E-03 |
| 11 | GO:0009501: amyloplast | 2.63E-03 |
| 12 | GO:0009514: glyoxysome | 3.00E-03 |
| 13 | GO:0005779: integral component of peroxisomal membrane | 3.00E-03 |
| 14 | GO:0005884: actin filament | 4.67E-03 |
| 15 | GO:0009941: chloroplast envelope | 4.77E-03 |
| 16 | GO:0005773: vacuole | 6.20E-03 |
| 17 | GO:0005739: mitochondrion | 6.93E-03 |
| 18 | GO:0009706: chloroplast inner membrane | 7.32E-03 |
| 19 | GO:0009532: plastid stroma | 8.73E-03 |
| 20 | GO:0005887: integral component of plasma membrane | 1.10E-02 |
| 21 | GO:0005778: peroxisomal membrane | 1.72E-02 |
| 22 | GO:0010319: stromule | 1.72E-02 |
| 23 | GO:0009707: chloroplast outer membrane | 2.25E-02 |
| 24 | GO:0005834: heterotrimeric G-protein complex | 4.65E-02 |
| 25 | GO:0009505: plant-type cell wall | 4.94E-02 |