co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000605: positive regulation of secondary growth	0.00E+00
2	GO:0045176: apical protein localization	0.00E+00
3	GO:0006223: uracil salvage	0.00E+00
4	GO:0016553: base conversion or substitution editing	0.00E+00
5	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
6	GO:0010157: response to chlorate	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0019323: pentose catabolic process	0.00E+00
9	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
10	GO:0006412: translation	2.26E-11
11	GO:0009735: response to cytokinin	5.32E-11
12	GO:0032544: plastid translation	1.07E-10
13	GO:0042254: ribosome biogenesis	4.34E-08
14	GO:0019464: glycine decarboxylation via glycine cleavage system	9.22E-08
15	GO:0009409: response to cold	2.45E-06
16	GO:0005983: starch catabolic process	1.14E-05
17	GO:0010196: nonphotochemical quenching	9.72E-05
18	GO:0019252: starch biosynthetic process	1.12E-04
19	GO:0009658: chloroplast organization	1.20E-04
20	GO:0043489: RNA stabilization	1.67E-04
21	GO:0044262: cellular carbohydrate metabolic process	1.67E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	1.67E-04
23	GO:0010206: photosystem II repair	1.91E-04
24	GO:0042742: defense response to bacterium	2.33E-04
25	GO:0015979: photosynthesis	2.40E-04
26	GO:0009817: defense response to fungus, incompatible interaction	3.00E-04
27	GO:0009773: photosynthetic electron transport in photosystem I	3.13E-04
28	GO:0009631: cold acclimation	3.64E-04
29	GO:0010270: photosystem II oxygen evolving complex assembly	3.78E-04
30	GO:2001295: malonyl-CoA biosynthetic process	6.19E-04
31	GO:0006228: UTP biosynthetic process	8.83E-04
32	GO:0009052: pentose-phosphate shunt, non-oxidative branch	8.83E-04
33	GO:0010731: protein glutathionylation	8.83E-04
34	GO:0006424: glutamyl-tRNA aminoacylation	8.83E-04
35	GO:0006241: CTP biosynthetic process	8.83E-04
36	GO:0006165: nucleoside diphosphate phosphorylation	8.83E-04
37	GO:0000413: protein peptidyl-prolyl isomerization	1.15E-03
38	GO:0044206: UMP salvage	1.17E-03
39	GO:2000122: negative regulation of stomatal complex development	1.17E-03
40	GO:0006546: glycine catabolic process	1.17E-03
41	GO:0010021: amylopectin biosynthetic process	1.17E-03
42	GO:0010037: response to carbon dioxide	1.17E-03
43	GO:0015976: carbon utilization	1.17E-03
44	GO:0006183: GTP biosynthetic process	1.17E-03
45	GO:0045727: positive regulation of translation	1.17E-03
46	GO:0006544: glycine metabolic process	1.48E-03
47	GO:0043097: pyrimidine nucleoside salvage	1.48E-03
48	GO:0032543: mitochondrial translation	1.48E-03
49	GO:0006461: protein complex assembly	1.48E-03
50	GO:0009435: NAD biosynthetic process	1.48E-03
51	GO:0000302: response to reactive oxygen species	1.52E-03
52	GO:0006206: pyrimidine nucleobase metabolic process	1.83E-03
53	GO:0006563: L-serine metabolic process	1.83E-03
54	GO:0048827: phyllome development	1.83E-03
55	GO:0000470: maturation of LSU-rRNA	1.83E-03
56	GO:0006828: manganese ion transport	1.83E-03
57	GO:0010027: thylakoid membrane organization	2.18E-03
58	GO:1901259: chloroplast rRNA processing	2.19E-03
59	GO:0010019: chloroplast-nucleus signaling pathway	2.19E-03
60	GO:0010555: response to mannitol	2.19E-03
61	GO:0009955: adaxial/abaxial pattern specification	2.19E-03
62	GO:0046686: response to cadmium ion	2.32E-03
63	GO:0007623: circadian rhythm	2.54E-03
64	GO:0015995: chlorophyll biosynthetic process	2.56E-03
65	GO:0030091: protein repair	2.99E-03
66	GO:0009704: de-etiolation	2.99E-03
67	GO:0005978: glycogen biosynthetic process	2.99E-03
68	GO:0009642: response to light intensity	2.99E-03
69	GO:0009657: plastid organization	3.41E-03
70	GO:0009853: photorespiration	3.58E-03
71	GO:0034599: cellular response to oxidative stress	3.75E-03
72	GO:0006783: heme biosynthetic process	3.86E-03
73	GO:0005982: starch metabolic process	4.33E-03
74	GO:0035999: tetrahydrofolate interconversion	4.33E-03
75	GO:0006782: protoporphyrinogen IX biosynthetic process	4.81E-03
76	GO:0009089: lysine biosynthetic process via diaminopimelate	5.32E-03
77	GO:0018119: peptidyl-cysteine S-nitrosylation	5.32E-03
78	GO:0016485: protein processing	5.32E-03
79	GO:0006816: calcium ion transport	5.32E-03
80	GO:0080167: response to karrikin	5.80E-03
81	GO:0045037: protein import into chloroplast stroma	5.84E-03
82	GO:0006807: nitrogen compound metabolic process	6.38E-03
83	GO:0010229: inflorescence development	6.38E-03
84	GO:0009767: photosynthetic electron transport chain	6.38E-03
85	GO:0019253: reductive pentose-phosphate cycle	6.93E-03
86	GO:0010540: basipetal auxin transport	6.93E-03
87	GO:0010020: chloroplast fission	6.93E-03
88	GO:0045454: cell redox homeostasis	7.29E-03
89	GO:0005975: carbohydrate metabolic process	7.66E-03
90	GO:0006636: unsaturated fatty acid biosynthetic process	8.10E-03
91	GO:0051017: actin filament bundle assembly	8.70E-03
92	GO:0006289: nucleotide-excision repair	8.70E-03
93	GO:0019344: cysteine biosynthetic process	8.70E-03
94	GO:0009116: nucleoside metabolic process	8.70E-03
95	GO:0000027: ribosomal large subunit assembly	8.70E-03
96	GO:0006508: proteolysis	8.78E-03
97	GO:0007017: microtubule-based process	9.33E-03
98	GO:0055114: oxidation-reduction process	1.01E-02
99	GO:0035428: hexose transmembrane transport	1.06E-02
100	GO:0008152: metabolic process	1.08E-02
101	GO:0009411: response to UV	1.13E-02
102	GO:0006012: galactose metabolic process	1.13E-02
103	GO:0042744: hydrogen peroxide catabolic process	1.26E-02
104	GO:0009790: embryo development	1.30E-02
105	GO:0006633: fatty acid biosynthetic process	1.39E-02
106	GO:0046323: glucose import	1.41E-02
107	GO:0015986: ATP synthesis coupled proton transport	1.49E-02
108	GO:0007018: microtubule-based movement	1.49E-02
109	GO:0048825: cotyledon development	1.56E-02
110	GO:0009793: embryo development ending in seed dormancy	1.59E-02
111	GO:0010583: response to cyclopentenone	1.72E-02
112	GO:0032502: developmental process	1.72E-02
113	GO:0030163: protein catabolic process	1.80E-02
114	GO:0009911: positive regulation of flower development	2.13E-02
115	GO:0006457: protein folding	2.72E-02
116	GO:0010119: regulation of stomatal movement	2.85E-02
117	GO:0045087: innate immune response	3.05E-02
118	GO:0006839: mitochondrial transport	3.34E-02
119	GO:0042542: response to hydrogen peroxide	3.55E-02
120	GO:0009585: red, far-red light phototransduction	4.51E-02
121	GO:0006364: rRNA processing	4.51E-02
122	GO:0006979: response to oxidative stress	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0051060: pullulanase activity	0.00E+00
2	GO:0102985: Delta12-fatty-acid desaturase activity	0.00E+00
3	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
4	GO:0051738: xanthophyll binding	0.00E+00
5	GO:0016720: delta12-fatty acid dehydrogenase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0010303: limit dextrinase activity	0.00E+00
8	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
9	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
10	GO:0019843: rRNA binding	7.77E-16
11	GO:0003735: structural constituent of ribosome	8.91E-14
12	GO:0008266: poly(U) RNA binding	2.83E-07
13	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.16E-05
14	GO:0004556: alpha-amylase activity	5.21E-05
15	GO:0004130: cytochrome-c peroxidase activity	5.21E-05
16	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.72E-05
17	GO:0051920: peroxiredoxin activity	7.27E-05
18	GO:0016209: antioxidant activity	1.25E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	1.67E-04
20	GO:0045485: omega-6 fatty acid desaturase activity	1.67E-04
21	GO:0004856: xylulokinase activity	1.67E-04
22	GO:0009496: plastoquinol--plastocyanin reductase activity	1.67E-04
23	GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity	1.67E-04
24	GO:0019203: carbohydrate phosphatase activity	1.67E-04
25	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.67E-04
26	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.67E-04
27	GO:0005534: galactose binding	1.67E-04
28	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.67E-04
29	GO:0018708: thiol S-methyltransferase activity	3.78E-04
30	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	3.78E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.78E-04
32	GO:0004618: phosphoglycerate kinase activity	3.78E-04
33	GO:0033201: alpha-1,4-glucan synthase activity	3.78E-04
34	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.78E-04
35	GO:0004750: ribulose-phosphate 3-epimerase activity	3.78E-04
36	GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	6.19E-04
37	GO:0004075: biotin carboxylase activity	6.19E-04
38	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.19E-04
39	GO:0030267: glyoxylate reductase (NADP) activity	6.19E-04
40	GO:0070402: NADPH binding	6.19E-04
41	GO:0004324: ferredoxin-NADP+ reductase activity	6.19E-04
42	GO:0004373: glycogen (starch) synthase activity	6.19E-04
43	GO:0004148: dihydrolipoyl dehydrogenase activity	6.19E-04
44	GO:0005528: FK506 binding	6.38E-04
45	GO:0004550: nucleoside diphosphate kinase activity	8.83E-04
46	GO:0043023: ribosomal large subunit binding	8.83E-04
47	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.17E-03
48	GO:0009011: starch synthase activity	1.17E-03
49	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.17E-03
50	GO:0004845: uracil phosphoribosyltransferase activity	1.17E-03
51	GO:0016836: hydro-lyase activity	1.17E-03
52	GO:0050662: coenzyme binding	1.33E-03
53	GO:0004372: glycine hydroxymethyltransferase activity	1.48E-03
54	GO:0003959: NADPH dehydrogenase activity	1.48E-03
55	GO:0003989: acetyl-CoA carboxylase activity	1.48E-03
56	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.48E-03
57	GO:0016688: L-ascorbate peroxidase activity	1.83E-03
58	GO:0004849: uridine kinase activity	2.19E-03
59	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.19E-03
60	GO:0004602: glutathione peroxidase activity	2.19E-03
61	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.19E-03
62	GO:0008236: serine-type peptidase activity	2.70E-03
63	GO:0004034: aldose 1-epimerase activity	2.99E-03
64	GO:0004222: metalloendopeptidase activity	3.12E-03
65	GO:0015078: hydrogen ion transmembrane transporter activity	3.41E-03
66	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.86E-03
67	GO:0005384: manganese ion transmembrane transporter activity	4.33E-03
68	GO:0004601: peroxidase activity	4.41E-03
69	GO:0015386: potassium:proton antiporter activity	5.32E-03
70	GO:0004089: carbonate dehydratase activity	6.38E-03
71	GO:0015095: magnesium ion transmembrane transporter activity	6.38E-03
72	GO:0031072: heat shock protein binding	6.38E-03
73	GO:0004565: beta-galactosidase activity	6.38E-03
74	GO:0051082: unfolded protein binding	8.84E-03
75	GO:0015079: potassium ion transmembrane transporter activity	9.33E-03
76	GO:0022891: substrate-specific transmembrane transporter activity	1.13E-02
77	GO:0004252: serine-type endopeptidase activity	1.23E-02
78	GO:0005355: glucose transmembrane transporter activity	1.49E-02
79	GO:0016853: isomerase activity	1.49E-02
80	GO:0048038: quinone binding	1.64E-02
81	GO:0051015: actin filament binding	1.80E-02
82	GO:0008237: metallopeptidase activity	1.96E-02
83	GO:0005200: structural constituent of cytoskeleton	1.96E-02
84	GO:0016491: oxidoreductase activity	2.06E-02
85	GO:0016168: chlorophyll binding	2.22E-02
86	GO:0030247: polysaccharide binding	2.39E-02
87	GO:0003729: mRNA binding	2.47E-02
88	GO:0008233: peptidase activity	2.90E-02
89	GO:0004364: glutathione transferase activity	3.55E-02
90	GO:0042803: protein homodimerization activity	3.69E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	3.86E-02
92	GO:0005198: structural molecule activity	3.96E-02
93	GO:0016787: hydrolase activity	4.20E-02
94	GO:0003777: microtubule motor activity	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009507: chloroplast	8.22E-68
4	GO:0009570: chloroplast stroma	2.77E-60
5	GO:0009941: chloroplast envelope	3.33E-59
6	GO:0009579: thylakoid	3.90E-37
7	GO:0009534: chloroplast thylakoid	4.83E-32
8	GO:0009535: chloroplast thylakoid membrane	1.06E-28
9	GO:0005840: ribosome	7.75E-15
10	GO:0031977: thylakoid lumen	5.78E-13
11	GO:0009543: chloroplast thylakoid lumen	1.50E-12
12	GO:0010319: stromule	2.25E-07
13	GO:0010287: plastoglobule	1.05E-06
14	GO:0009533: chloroplast stromal thylakoid	1.19E-06
15	GO:0048046: apoplast	4.54E-06
16	GO:0005960: glycine cleavage complex	1.16E-05
17	GO:0016020: membrane	1.44E-05
18	GO:0009536: plastid	8.05E-05
19	GO:0009706: chloroplast inner membrane	1.64E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.67E-04
21	GO:0009295: nucleoid	1.77E-04
22	GO:0031969: chloroplast membrane	1.85E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.91E-04
24	GO:0000311: plastid large ribosomal subunit	3.60E-04
25	GO:0030093: chloroplast photosystem I	3.78E-04
26	GO:0009508: plastid chromosome	4.10E-04
27	GO:0030095: chloroplast photosystem II	4.63E-04
28	GO:0022625: cytosolic large ribosomal subunit	1.17E-03
29	GO:0009517: PSII associated light-harvesting complex II	1.17E-03
30	GO:0009523: photosystem II	1.42E-03
31	GO:0009512: cytochrome b6f complex	1.48E-03
32	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.83E-03
33	GO:0009501: amyloplast	2.99E-03
34	GO:0015934: large ribosomal subunit	3.27E-03
35	GO:0042644: chloroplast nucleoid	3.86E-03
36	GO:0045298: tubulin complex	3.86E-03
37	GO:0031090: organelle membrane	3.86E-03
38	GO:0005763: mitochondrial small ribosomal subunit	3.86E-03
39	GO:0022626: cytosolic ribosome	4.39E-03
40	GO:0009654: photosystem II oxygen evolving complex	9.33E-03
41	GO:0015935: small ribosomal subunit	9.97E-03
42	GO:0015629: actin cytoskeleton	1.13E-02
43	GO:0005871: kinesin complex	1.27E-02
44	GO:0005759: mitochondrial matrix	1.39E-02
45	GO:0005770: late endosome	1.41E-02
46	GO:0005618: cell wall	1.44E-02
47	GO:0019898: extrinsic component of membrane	1.56E-02
48	GO:0030529: intracellular ribonucleoprotein complex	2.13E-02
49	GO:0005874: microtubule	2.85E-02
50	GO:0005856: cytoskeleton	3.96E-02