co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74880

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007172: signal complex assembly	0.00E+00
2	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0015717: triose phosphate transport	0.00E+00
5	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0030155: regulation of cell adhesion	0.00E+00
8	GO:0090706: specification of plant organ position	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
11	GO:0015979: photosynthesis	2.42E-09
12	GO:0042549: photosystem II stabilization	2.10E-06
13	GO:0010027: thylakoid membrane organization	3.43E-06
14	GO:0018026: peptidyl-lysine monomethylation	4.48E-06
15	GO:0061077: chaperone-mediated protein folding	7.09E-06
16	GO:0009773: photosynthetic electron transport in photosystem I	3.94E-05
17	GO:0015995: chlorophyll biosynthetic process	8.90E-05
18	GO:0010480: microsporocyte differentiation	3.14E-04
19	GO:0042371: vitamin K biosynthetic process	3.14E-04
20	GO:0065002: intracellular protein transmembrane transport	3.14E-04
21	GO:0080093: regulation of photorespiration	3.14E-04
22	GO:0043007: maintenance of rDNA	3.14E-04
23	GO:0031998: regulation of fatty acid beta-oxidation	3.14E-04
24	GO:0010450: inflorescence meristem growth	3.14E-04
25	GO:0000476: maturation of 4.5S rRNA	3.14E-04
26	GO:0005980: glycogen catabolic process	3.14E-04
27	GO:0000967: rRNA 5'-end processing	3.14E-04
28	GO:0043953: protein transport by the Tat complex	3.14E-04
29	GO:0032544: plastid translation	3.98E-04
30	GO:0010205: photoinhibition	5.66E-04
31	GO:0006782: protoporphyrinogen IX biosynthetic process	6.60E-04
32	GO:0009658: chloroplast organization	6.78E-04
33	GO:0031648: protein destabilization	6.87E-04
34	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.87E-04
35	GO:0080181: lateral root branching	6.87E-04
36	GO:0034470: ncRNA processing	6.87E-04
37	GO:0035304: regulation of protein dephosphorylation	6.87E-04
38	GO:0019684: photosynthesis, light reaction	7.62E-04
39	GO:0006094: gluconeogenesis	9.84E-04
40	GO:0080055: low-affinity nitrate transport	1.11E-03
41	GO:0035436: triose phosphate transmembrane transport	1.11E-03
42	GO:0016050: vesicle organization	1.11E-03
43	GO:0045165: cell fate commitment	1.11E-03
44	GO:0009266: response to temperature stimulus	1.11E-03
45	GO:0009934: regulation of meristem structural organization	1.11E-03
46	GO:0048281: inflorescence morphogenesis	1.11E-03
47	GO:0006000: fructose metabolic process	1.11E-03
48	GO:0009405: pathogenesis	1.11E-03
49	GO:0009944: polarity specification of adaxial/abaxial axis	1.52E-03
50	GO:1901332: negative regulation of lateral root development	1.60E-03
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.60E-03
52	GO:0010148: transpiration	1.60E-03
53	GO:0010021: amylopectin biosynthetic process	2.14E-03
54	GO:0006808: regulation of nitrogen utilization	2.14E-03
55	GO:0015976: carbon utilization	2.14E-03
56	GO:0019464: glycine decarboxylation via glycine cleavage system	2.14E-03
57	GO:0006109: regulation of carbohydrate metabolic process	2.14E-03
58	GO:0022622: root system development	2.14E-03
59	GO:0010600: regulation of auxin biosynthetic process	2.14E-03
60	GO:0031122: cytoplasmic microtubule organization	2.14E-03
61	GO:0006552: leucine catabolic process	2.14E-03
62	GO:0006546: glycine catabolic process	2.14E-03
63	GO:0015713: phosphoglycerate transport	2.14E-03
64	GO:0010236: plastoquinone biosynthetic process	2.74E-03
65	GO:0006097: glyoxylate cycle	2.74E-03
66	GO:0035434: copper ion transmembrane transport	2.74E-03
67	GO:1902183: regulation of shoot apical meristem development	2.74E-03
68	GO:0010158: abaxial cell fate specification	2.74E-03
69	GO:0003006: developmental process involved in reproduction	3.38E-03
70	GO:0009643: photosynthetic acclimation	3.38E-03
71	GO:0042793: transcription from plastid promoter	3.38E-03
72	GO:0010190: cytochrome b6f complex assembly	3.38E-03
73	GO:0006458: 'de novo' protein folding	4.06E-03
74	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.06E-03
75	GO:0042026: protein refolding	4.06E-03
76	GO:0042372: phylloquinone biosynthetic process	4.06E-03
77	GO:0006810: transport	4.30E-03
78	GO:0022904: respiratory electron transport chain	4.80E-03
79	GO:0010103: stomatal complex morphogenesis	4.80E-03
80	GO:0032880: regulation of protein localization	4.80E-03
81	GO:0010161: red light signaling pathway	4.80E-03
82	GO:0009772: photosynthetic electron transport in photosystem II	4.80E-03
83	GO:0048437: floral organ development	4.80E-03
84	GO:0070370: cellular heat acclimation	4.80E-03
85	GO:0006353: DNA-templated transcription, termination	5.57E-03
86	GO:0009704: de-etiolation	5.57E-03
87	GO:0010928: regulation of auxin mediated signaling pathway	5.57E-03
88	GO:0005978: glycogen biosynthetic process	5.57E-03
89	GO:0010093: specification of floral organ identity	6.39E-03
90	GO:0006002: fructose 6-phosphate metabolic process	6.39E-03
91	GO:0001558: regulation of cell growth	6.39E-03
92	GO:0016311: dephosphorylation	6.67E-03
93	GO:0006783: heme biosynthetic process	7.24E-03
94	GO:0000902: cell morphogenesis	7.24E-03
95	GO:0051865: protein autoubiquitination	7.24E-03
96	GO:0010206: photosystem II repair	7.24E-03
97	GO:0048507: meristem development	7.24E-03
98	GO:2000024: regulation of leaf development	7.24E-03
99	GO:0009631: cold acclimation	8.12E-03
100	GO:0005982: starch metabolic process	8.14E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	8.14E-03
102	GO:0048829: root cap development	9.07E-03
103	GO:0010215: cellulose microfibril organization	9.07E-03
104	GO:0031627: telomeric loop formation	9.07E-03
105	GO:0006415: translational termination	1.00E-02
106	GO:0009750: response to fructose	1.00E-02
107	GO:0048229: gametophyte development	1.00E-02
108	GO:0010015: root morphogenesis	1.00E-02
109	GO:0009089: lysine biosynthetic process via diaminopimelate	1.00E-02
110	GO:0009073: aromatic amino acid family biosynthetic process	1.00E-02
111	GO:0043085: positive regulation of catalytic activity	1.00E-02
112	GO:0010582: floral meristem determinacy	1.11E-02
113	GO:0071365: cellular response to auxin stimulus	1.11E-02
114	GO:0005983: starch catabolic process	1.11E-02
115	GO:0010628: positive regulation of gene expression	1.21E-02
116	GO:0006108: malate metabolic process	1.21E-02
117	GO:0018107: peptidyl-threonine phosphorylation	1.21E-02
118	GO:0010075: regulation of meristem growth	1.21E-02
119	GO:0005986: sucrose biosynthetic process	1.21E-02
120	GO:2000012: regulation of auxin polar transport	1.21E-02
121	GO:0006302: double-strand break repair	1.32E-02
122	GO:0048467: gynoecium development	1.32E-02
123	GO:0010207: photosystem II assembly	1.32E-02
124	GO:0009933: meristem structural organization	1.32E-02
125	GO:0010030: positive regulation of seed germination	1.43E-02
126	GO:0006636: unsaturated fatty acid biosynthetic process	1.54E-02
127	GO:0009768: photosynthesis, light harvesting in photosystem I	1.78E-02
128	GO:0006825: copper ion transport	1.78E-02
129	GO:0051302: regulation of cell division	1.78E-02
130	GO:0007017: microtubule-based process	1.78E-02
131	GO:0006096: glycolytic process	1.84E-02
132	GO:0019915: lipid storage	1.91E-02
133	GO:0051321: meiotic cell cycle	1.91E-02
134	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.93E-02
135	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.03E-02
136	GO:0019748: secondary metabolic process	2.03E-02
137	GO:0030245: cellulose catabolic process	2.03E-02
138	GO:0010017: red or far-red light signaling pathway	2.03E-02
139	GO:0001944: vasculature development	2.16E-02
140	GO:0009686: gibberellin biosynthetic process	2.16E-02
141	GO:0006284: base-excision repair	2.29E-02
142	GO:0045454: cell redox homeostasis	2.33E-02
143	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.43E-02
144	GO:0008284: positive regulation of cell proliferation	2.43E-02
145	GO:0048653: anther development	2.57E-02
146	GO:0042631: cellular response to water deprivation	2.57E-02
147	GO:0006869: lipid transport	2.61E-02
148	GO:0006662: glycerol ether metabolic process	2.71E-02
149	GO:0009958: positive gravitropism	2.71E-02
150	GO:0006520: cellular amino acid metabolic process	2.71E-02
151	GO:0010154: fruit development	2.71E-02
152	GO:0009646: response to absence of light	2.85E-02
153	GO:0019252: starch biosynthetic process	3.00E-02
154	GO:0006281: DNA repair	3.02E-02
155	GO:0009409: response to cold	3.04E-02
156	GO:0071554: cell wall organization or biogenesis	3.15E-02
157	GO:0009790: embryo development	3.24E-02
158	GO:0048235: pollen sperm cell differentiation	3.30E-02
159	GO:0032502: developmental process	3.30E-02
160	GO:0008152: metabolic process	3.41E-02
161	GO:1901657: glycosyl compound metabolic process	3.45E-02
162	GO:0071281: cellular response to iron ion	3.45E-02
163	GO:0006310: DNA recombination	3.61E-02
164	GO:0009567: double fertilization forming a zygote and endosperm	3.61E-02
165	GO:0045490: pectin catabolic process	3.83E-02
166	GO:0009607: response to biotic stimulus	4.25E-02
167	GO:0009627: systemic acquired resistance	4.42E-02
168	GO:0018298: protein-chromophore linkage	4.93E-02
169	GO:0009817: defense response to fungus, incompatible interaction	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
2	GO:0048039: ubiquinone binding	0.00E+00
3	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
11	GO:0016279: protein-lysine N-methyltransferase activity	6.35E-05
12	GO:0005528: FK506 binding	1.21E-04
13	GO:0080030: methyl indole-3-acetate esterase activity	1.45E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.14E-04
15	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.14E-04
16	GO:0008184: glycogen phosphorylase activity	3.14E-04
17	GO:0010242: oxygen evolving activity	3.14E-04
18	GO:0004645: phosphorylase activity	3.14E-04
19	GO:0004853: uroporphyrinogen decarboxylase activity	3.14E-04
20	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.26E-04
21	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.87E-04
22	GO:0042389: omega-3 fatty acid desaturase activity	6.87E-04
23	GO:0016868: intramolecular transferase activity, phosphotransferases	6.87E-04
24	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.87E-04
25	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.87E-04
26	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.87E-04
27	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.87E-04
28	GO:0044183: protein binding involved in protein folding	7.62E-04
29	GO:0071917: triose-phosphate transmembrane transporter activity	1.11E-03
30	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.11E-03
31	GO:0043169: cation binding	1.11E-03
32	GO:0017150: tRNA dihydrouridine synthase activity	1.11E-03
33	GO:0090729: toxin activity	1.11E-03
34	GO:0016149: translation release factor activity, codon specific	1.60E-03
35	GO:0016851: magnesium chelatase activity	1.60E-03
36	GO:0043023: ribosomal large subunit binding	1.60E-03
37	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.60E-03
38	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.60E-03
39	GO:0033612: receptor serine/threonine kinase binding	1.84E-03
40	GO:0043621: protein self-association	1.94E-03
41	GO:0042277: peptide binding	2.14E-03
42	GO:0015120: phosphoglycerate transmembrane transporter activity	2.14E-03
43	GO:0004659: prenyltransferase activity	2.14E-03
44	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.14E-03
45	GO:0080032: methyl jasmonate esterase activity	2.14E-03
46	GO:0019199: transmembrane receptor protein kinase activity	2.14E-03
47	GO:0030570: pectate lyase activity	2.20E-03
48	GO:0008725: DNA-3-methyladenine glycosylase activity	2.74E-03
49	GO:0016615: malate dehydrogenase activity	3.38E-03
50	GO:0004332: fructose-bisphosphate aldolase activity	3.38E-03
51	GO:0048038: quinone binding	3.72E-03
52	GO:0030060: L-malate dehydrogenase activity	4.06E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	5.57E-03
54	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.39E-03
55	GO:0005375: copper ion transmembrane transporter activity	6.39E-03
56	GO:0003747: translation release factor activity	7.24E-03
57	GO:0030145: manganese ion binding	8.12E-03
58	GO:0009055: electron carrier activity	8.78E-03
59	GO:0008047: enzyme activator activity	9.07E-03
60	GO:0015020: glucuronosyltransferase activity	9.07E-03
61	GO:0003691: double-stranded telomeric DNA binding	1.00E-02
62	GO:0016491: oxidoreductase activity	1.02E-02
63	GO:0008378: galactosyltransferase activity	1.11E-02
64	GO:0004089: carbonate dehydratase activity	1.21E-02
65	GO:0004565: beta-galactosidase activity	1.21E-02
66	GO:0051537: 2 iron, 2 sulfur cluster binding	1.25E-02
67	GO:0008266: poly(U) RNA binding	1.32E-02
68	GO:0008083: growth factor activity	1.32E-02
69	GO:0000287: magnesium ion binding	1.38E-02
70	GO:0031409: pigment binding	1.54E-02
71	GO:0004857: enzyme inhibitor activity	1.66E-02
72	GO:0008408: 3'-5' exonuclease activity	1.91E-02
73	GO:0008810: cellulase activity	2.16E-02
74	GO:0051082: unfolded protein binding	2.22E-02
75	GO:0015035: protein disulfide oxidoreductase activity	2.28E-02
76	GO:0047134: protein-disulfide reductase activity	2.43E-02
77	GO:0019843: rRNA binding	2.78E-02
78	GO:0004791: thioredoxin-disulfide reductase activity	2.85E-02
79	GO:0016829: lyase activity	3.00E-02
80	GO:0030170: pyridoxal phosphate binding	3.08E-02
81	GO:0004252: serine-type endopeptidase activity	3.08E-02
82	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.45E-02
83	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.77E-02
84	GO:0005200: structural constituent of cytoskeleton	3.77E-02
85	GO:0008483: transaminase activity	3.77E-02
86	GO:0016413: O-acetyltransferase activity	3.92E-02
87	GO:0016168: chlorophyll binding	4.25E-02
88	GO:0008289: lipid binding	4.54E-02
89	GO:0102483: scopolin beta-glucosidase activity	4.59E-02
90	GO:0005509: calcium ion binding	4.68E-02
91	GO:0008236: serine-type peptidase activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0009507: chloroplast	3.45E-29
6	GO:0009535: chloroplast thylakoid membrane	3.51E-18
7	GO:0009570: chloroplast stroma	1.57E-16
8	GO:0009534: chloroplast thylakoid	5.88E-16
9	GO:0009941: chloroplast envelope	7.28E-11
10	GO:0009543: chloroplast thylakoid lumen	1.49E-10
11	GO:0009579: thylakoid	4.19E-09
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.64E-07
13	GO:0031977: thylakoid lumen	1.02E-06
14	GO:0030095: chloroplast photosystem II	2.15E-06
15	GO:0009654: photosystem II oxygen evolving complex	5.74E-06
16	GO:0019898: extrinsic component of membrane	2.77E-05
17	GO:0010287: plastoglobule	1.46E-04
18	GO:0031361: integral component of thylakoid membrane	3.14E-04
19	GO:0000791: euchromatin	3.14E-04
20	GO:0009538: photosystem I reaction center	3.24E-04
21	GO:0009295: nucleoid	5.88E-04
22	GO:0030870: Mre11 complex	6.87E-04
23	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.87E-04
24	GO:0009508: plastid chromosome	9.84E-04
25	GO:0010007: magnesium chelatase complex	1.11E-03
26	GO:0033281: TAT protein transport complex	1.11E-03
27	GO:0005960: glycine cleavage complex	1.60E-03
28	GO:0000795: synaptonemal complex	2.74E-03
29	GO:0030915: Smc5-Smc6 complex	2.74E-03
30	GO:0016272: prefoldin complex	4.06E-03
31	GO:0009840: chloroplastic endopeptidase Clp complex	4.06E-03
32	GO:0010005: cortical microtubule, transverse to long axis	4.06E-03
33	GO:0031969: chloroplast membrane	4.37E-03
34	GO:0009533: chloroplast stromal thylakoid	4.80E-03
35	GO:0031305: integral component of mitochondrial inner membrane	5.57E-03
36	GO:0009501: amyloplast	5.57E-03
37	GO:0000783: nuclear telomere cap complex	6.39E-03
38	GO:0045298: tubulin complex	7.24E-03
39	GO:0005740: mitochondrial envelope	9.07E-03
40	GO:0016324: apical plasma membrane	9.07E-03
41	GO:0048046: apoplast	1.21E-02
42	GO:0030076: light-harvesting complex	1.43E-02
43	GO:0042651: thylakoid membrane	1.78E-02
44	GO:0015935: small ribosomal subunit	1.91E-02
45	GO:0009532: plastid stroma	1.91E-02
46	GO:0009706: chloroplast inner membrane	2.22E-02
47	GO:0009536: plastid	2.58E-02
48	GO:0009522: photosystem I	2.85E-02
49	GO:0009523: photosystem II	3.00E-02
50	GO:0000785: chromatin	3.30E-02
51	GO:0010319: stromule	3.77E-02