co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015882: L-ascorbic acid transport	0.00E+00
2	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
3	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
4	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
5	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
6	GO:0070125: mitochondrial translational elongation	0.00E+00
7	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
8	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
9	GO:0006021: inositol biosynthetic process	1.09E-08
10	GO:0009642: response to light intensity	2.26E-07
11	GO:0015979: photosynthesis	1.02E-06
12	GO:0090391: granum assembly	1.08E-06
13	GO:0006000: fructose metabolic process	1.08E-06
14	GO:0015995: chlorophyll biosynthetic process	1.26E-06
15	GO:0010114: response to red light	4.70E-06
16	GO:0009768: photosynthesis, light harvesting in photosystem I	5.22E-06
17	GO:0016123: xanthophyll biosynthetic process	8.32E-06
18	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.28E-05
19	GO:0009645: response to low light intensity stimulus	2.51E-05
20	GO:0010196: nonphotochemical quenching	2.51E-05
21	GO:0006002: fructose 6-phosphate metabolic process	4.22E-05
22	GO:0010206: photosystem II repair	5.26E-05
23	GO:0018298: protein-chromophore linkage	5.69E-05
24	GO:0055114: oxidation-reduction process	5.96E-05
25	GO:0051775: response to redox state	7.07E-05
26	GO:0071277: cellular response to calcium ion	7.07E-05
27	GO:0006659: phosphatidylserine biosynthetic process	7.07E-05
28	GO:0043609: regulation of carbon utilization	7.07E-05
29	GO:0010028: xanthophyll cycle	7.07E-05
30	GO:0034599: cellular response to oxidative stress	8.73E-05
31	GO:0043085: positive regulation of catalytic activity	9.12E-05
32	GO:0006790: sulfur compound metabolic process	1.07E-04
33	GO:0006094: gluconeogenesis	1.23E-04
34	GO:0009644: response to high light intensity	1.33E-04
35	GO:0019253: reductive pentose-phosphate cycle	1.41E-04
36	GO:0046854: phosphatidylinositol phosphorylation	1.59E-04
37	GO:0042548: regulation of photosynthesis, light reaction	1.70E-04
38	GO:0000256: allantoin catabolic process	1.70E-04
39	GO:0097054: L-glutamate biosynthetic process	1.70E-04
40	GO:0006729: tetrahydrobiopterin biosynthetic process	1.70E-04
41	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.70E-04
42	GO:0010136: ureide catabolic process	2.86E-04
43	GO:0006662: glycerol ether metabolic process	4.06E-04
44	GO:0042823: pyridoxal phosphate biosynthetic process	4.15E-04
45	GO:0006537: glutamate biosynthetic process	4.15E-04
46	GO:0006020: inositol metabolic process	4.15E-04
47	GO:0006107: oxaloacetate metabolic process	4.15E-04
48	GO:0006145: purine nucleobase catabolic process	4.15E-04
49	GO:0019252: starch biosynthetic process	4.67E-04
50	GO:0008654: phospholipid biosynthetic process	4.67E-04
51	GO:0009791: post-embryonic development	4.67E-04
52	GO:0009793: embryo development ending in seed dormancy	4.85E-04
53	GO:0006734: NADH metabolic process	5.53E-04
54	GO:0019676: ammonia assimilation cycle	5.53E-04
55	GO:0006109: regulation of carbohydrate metabolic process	5.53E-04
56	GO:0015994: chlorophyll metabolic process	5.53E-04
57	GO:0010027: thylakoid membrane organization	7.13E-04
58	GO:0046855: inositol phosphate dephosphorylation	8.57E-04
59	GO:0009643: photosynthetic acclimation	8.57E-04
60	GO:0050665: hydrogen peroxide biosynthetic process	8.57E-04
61	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	8.57E-04
62	GO:0010218: response to far red light	1.01E-03
63	GO:0009658: chloroplast organization	1.01E-03
64	GO:0009854: oxidative photosynthetic carbon pathway	1.02E-03
65	GO:0071470: cellular response to osmotic stress	1.02E-03
66	GO:0009637: response to blue light	1.15E-03
67	GO:0009853: photorespiration	1.15E-03
68	GO:0009769: photosynthesis, light harvesting in photosystem II	1.19E-03
69	GO:0009704: de-etiolation	1.37E-03
70	GO:0009657: plastid organization	1.56E-03
71	GO:0090333: regulation of stomatal closure	1.76E-03
72	GO:0098656: anion transmembrane transport	1.76E-03
73	GO:0009245: lipid A biosynthetic process	1.76E-03
74	GO:0006098: pentose-phosphate shunt	1.76E-03
75	GO:0009408: response to heat	2.16E-03
76	GO:0009688: abscisic acid biosynthetic process	2.19E-03
77	GO:0006096: glycolytic process	2.31E-03
78	GO:0009773: photosynthetic electron transport in photosystem I	2.41E-03
79	GO:0006108: malate metabolic process	2.88E-03
80	GO:0006006: glucose metabolic process	2.88E-03
81	GO:0005986: sucrose biosynthetic process	2.88E-03
82	GO:0010207: photosystem II assembly	3.12E-03
83	GO:0009735: response to cytokinin	3.98E-03
84	GO:0008299: isoprenoid biosynthetic process	4.17E-03
85	GO:0009269: response to desiccation	4.44E-03
86	GO:0006413: translational initiation	4.44E-03
87	GO:0009416: response to light stimulus	4.46E-03
88	GO:0007623: circadian rhythm	4.76E-03
89	GO:0016117: carotenoid biosynthetic process	5.62E-03
90	GO:0042335: cuticle development	5.93E-03
91	GO:0010182: sugar mediated signaling pathway	6.24E-03
92	GO:0006814: sodium ion transport	6.56E-03
93	GO:0051607: defense response to virus	8.97E-03
94	GO:0009627: systemic acquired resistance	1.01E-02
95	GO:0042742: defense response to bacterium	1.09E-02
96	GO:0045454: cell redox homeostasis	1.09E-02
97	GO:0016311: dephosphorylation	1.09E-02
98	GO:0006499: N-terminal protein myristoylation	1.21E-02
99	GO:0007568: aging	1.25E-02
100	GO:0016051: carbohydrate biosynthetic process	1.33E-02
101	GO:0006099: tricarboxylic acid cycle	1.37E-02
102	GO:0042542: response to hydrogen peroxide	1.55E-02
103	GO:0009744: response to sucrose	1.59E-02
104	GO:0009409: response to cold	1.60E-02
105	GO:0046686: response to cadmium ion	1.91E-02
106	GO:0006364: rRNA processing	1.97E-02
107	GO:0006417: regulation of translation	2.11E-02
108	GO:0043086: negative regulation of catalytic activity	2.21E-02
109	GO:0006396: RNA processing	2.58E-02
110	GO:0009845: seed germination	3.14E-02
111	GO:0006633: fatty acid biosynthetic process	3.49E-02
112	GO:0016036: cellular response to phosphate starvation	3.55E-02
113	GO:0006414: translational elongation	3.58E-02

Rank	GO Term	Adjusted P value
1	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
2	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
3	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
4	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
5	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
6	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
7	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
8	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
9	GO:0046408: chlorophyll synthetase activity	0.00E+00
10	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
11	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
12	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
13	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
14	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
15	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
16	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
17	GO:0004512: inositol-3-phosphate synthase activity	2.81E-07
18	GO:0031409: pigment binding	3.63E-06
19	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.83E-05
20	GO:0016168: chlorophyll binding	4.11E-05
21	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	7.07E-05
22	GO:0008746: NAD(P)+ transhydrogenase activity	7.07E-05
23	GO:0016041: glutamate synthase (ferredoxin) activity	7.07E-05
24	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	7.07E-05
25	GO:0035671: enone reductase activity	7.07E-05
26	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	7.07E-05
27	GO:0008047: enzyme activator activity	7.72E-05
28	GO:0031072: heat shock protein binding	1.23E-04
29	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.70E-04
30	GO:0010291: carotene beta-ring hydroxylase activity	1.70E-04
31	GO:0047746: chlorophyllase activity	1.70E-04
32	GO:0052832: inositol monophosphate 3-phosphatase activity	1.70E-04
33	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.70E-04
34	GO:0008934: inositol monophosphate 1-phosphatase activity	1.70E-04
35	GO:0052833: inositol monophosphate 4-phosphatase activity	1.70E-04
36	GO:0030267: glyoxylate reductase (NADP) activity	2.86E-04
37	GO:0070402: NADPH binding	2.86E-04
38	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.86E-04
39	GO:0047134: protein-disulfide reductase activity	3.49E-04
40	GO:0046872: metal ion binding	3.95E-04
41	GO:0016851: magnesium chelatase activity	4.15E-04
42	GO:0004792: thiosulfate sulfurtransferase activity	4.15E-04
43	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	4.15E-04
44	GO:0008508: bile acid:sodium symporter activity	4.15E-04
45	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	4.15E-04
46	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	4.15E-04
47	GO:0004791: thioredoxin-disulfide reductase activity	4.36E-04
48	GO:0016853: isomerase activity	4.36E-04
49	GO:0009011: starch synthase activity	5.53E-04
50	GO:0008891: glycolate oxidase activity	5.53E-04
51	GO:0008453: alanine-glyoxylate transaminase activity	5.53E-04
52	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.67E-04
53	GO:0051538: 3 iron, 4 sulfur cluster binding	7.00E-04
54	GO:0042578: phosphoric ester hydrolase activity	8.57E-04
55	GO:0031177: phosphopantetheine binding	8.57E-04
56	GO:0016615: malate dehydrogenase activity	8.57E-04
57	GO:2001070: starch binding	8.57E-04
58	GO:0004332: fructose-bisphosphate aldolase activity	8.57E-04
59	GO:0030060: L-malate dehydrogenase activity	1.02E-03
60	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.02E-03
61	GO:0000035: acyl binding	1.02E-03
62	GO:0003746: translation elongation factor activity	1.15E-03
63	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.37E-03
64	GO:0008135: translation factor activity, RNA binding	1.56E-03
65	GO:0071949: FAD binding	1.76E-03
66	GO:0051287: NAD binding	1.77E-03
67	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.97E-03
68	GO:0051082: unfolded protein binding	2.78E-03
69	GO:0015035: protein disulfide oxidoreductase activity	2.86E-03
70	GO:0005315: inorganic phosphate transmembrane transporter activity	2.88E-03
71	GO:0004857: enzyme inhibitor activity	3.89E-03
72	GO:0003756: protein disulfide isomerase activity	5.32E-03
73	GO:0003727: single-stranded RNA binding	5.32E-03
74	GO:0008514: organic anion transmembrane transporter activity	5.32E-03
75	GO:0010181: FMN binding	6.56E-03
76	GO:0030145: manganese ion binding	1.25E-02
77	GO:0003924: GTPase activity	1.35E-02
78	GO:0003993: acid phosphatase activity	1.37E-02
79	GO:0050661: NADP binding	1.46E-02
80	GO:0043621: protein self-association	1.68E-02
81	GO:0005198: structural molecule activity	1.73E-02
82	GO:0016874: ligase activity	2.42E-02
83	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.02E-02
84	GO:0005525: GTP binding	3.94E-02
85	GO:0003743: translation initiation factor activity	4.16E-02
86	GO:0042802: identical protein binding	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	4.19E-36
3	GO:0009941: chloroplast envelope	2.58E-26
4	GO:0009534: chloroplast thylakoid	5.63E-23
5	GO:0009535: chloroplast thylakoid membrane	7.23E-21
6	GO:0009570: chloroplast stroma	2.14E-20
7	GO:0009579: thylakoid	6.72E-15
8	GO:0010287: plastoglobule	9.97E-07
9	GO:0048046: apoplast	8.22E-06
10	GO:0031969: chloroplast membrane	1.38E-05
11	GO:0009782: photosystem I antenna complex	7.07E-05
12	GO:0031977: thylakoid lumen	1.06E-04
13	GO:0030076: light-harvesting complex	1.59E-04
14	GO:0010007: magnesium chelatase complex	2.86E-04
15	GO:0009706: chloroplast inner membrane	2.93E-04
16	GO:0009543: chloroplast thylakoid lumen	3.93E-04
17	GO:0009522: photosystem I	4.36E-04
18	GO:0009523: photosystem II	4.67E-04
19	GO:0009517: PSII associated light-harvesting complex II	5.53E-04
20	GO:0005623: cell	3.56E-03
21	GO:0042651: thylakoid membrane	4.17E-03
22	GO:0009654: photosystem II oxygen evolving complex	4.17E-03
23	GO:0005759: mitochondrial matrix	4.34E-03
24	GO:0019898: extrinsic component of membrane	6.89E-03
25	GO:0010319: stromule	8.61E-03
26	GO:0022626: cytosolic ribosome	2.30E-02
27	GO:0005777: peroxisome	2.76E-02
28	GO:0016020: membrane	4.17E-02
29	GO:0005739: mitochondrion	4.71E-02