co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G74060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007530: sex determination	0.00E+00
2	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
3	GO:0090239: regulation of histone H4 acetylation	0.00E+00
4	GO:0000740: nuclear membrane fusion	0.00E+00
5	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
6	GO:0006412: translation	2.39E-119
7	GO:0042254: ribosome biogenesis	3.44E-50
8	GO:0000027: ribosomal large subunit assembly	1.24E-11
9	GO:0009735: response to cytokinin	1.39E-05
10	GO:0009955: adaxial/abaxial pattern specification	1.98E-05
11	GO:0000028: ribosomal small subunit assembly	4.51E-05
12	GO:1902626: assembly of large subunit precursor of preribosome	5.34E-05
13	GO:0002181: cytoplasmic translation	5.34E-05
14	GO:0006820: anion transport	2.12E-04
15	GO:0006626: protein targeting to mitochondrion	2.55E-04
16	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	6.10E-04
17	GO:0006407: rRNA export from nucleus	6.10E-04
18	GO:1990258: histone glutamine methylation	6.10E-04
19	GO:0006475: internal protein amino acid acetylation	6.10E-04
20	GO:0015801: aromatic amino acid transport	6.10E-04
21	GO:0017198: N-terminal peptidyl-serine acetylation	6.10E-04
22	GO:2001006: regulation of cellulose biosynthetic process	6.10E-04
23	GO:0000494: box C/D snoRNA 3'-end processing	6.10E-04
24	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.10E-04
25	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.10E-04
26	GO:0009793: embryo development ending in seed dormancy	6.17E-04
27	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	6.90E-04
28	GO:0000398: mRNA splicing, via spliceosome	8.95E-04
29	GO:0009651: response to salt stress	9.08E-04
30	GO:0098656: anion transmembrane transport	1.25E-03
31	GO:0009245: lipid A biosynthetic process	1.25E-03
32	GO:0006432: phenylalanyl-tRNA aminoacylation	1.31E-03
33	GO:0045905: positive regulation of translational termination	1.31E-03
34	GO:0071668: plant-type cell wall assembly	1.31E-03
35	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	1.31E-03
36	GO:0045901: positive regulation of translational elongation	1.31E-03
37	GO:0045041: protein import into mitochondrial intermembrane space	1.31E-03
38	GO:0048569: post-embryonic animal organ development	1.31E-03
39	GO:0043981: histone H4-K5 acetylation	1.31E-03
40	GO:0006452: translational frameshifting	1.31E-03
41	GO:0010198: synergid death	1.31E-03
42	GO:0009965: leaf morphogenesis	1.41E-03
43	GO:0000387: spliceosomal snRNP assembly	1.47E-03
44	GO:0080156: mitochondrial mRNA modification	1.48E-03
45	GO:0032786: positive regulation of DNA-templated transcription, elongation	2.16E-03
46	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	2.16E-03
47	GO:1904278: positive regulation of wax biosynthetic process	2.16E-03
48	GO:0046417: chorismate metabolic process	2.16E-03
49	GO:0045793: positive regulation of cell size	2.16E-03
50	GO:0060145: viral gene silencing in virus induced gene silencing	2.16E-03
51	GO:0042256: mature ribosome assembly	2.16E-03
52	GO:0010452: histone H3-K36 methylation	2.16E-03
53	GO:0006414: translational elongation	3.06E-03
54	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.14E-03
55	GO:0006165: nucleoside diphosphate phosphorylation	3.14E-03
56	GO:0006228: UTP biosynthetic process	3.14E-03
57	GO:0006164: purine nucleotide biosynthetic process	3.14E-03
58	GO:0006168: adenine salvage	3.14E-03
59	GO:0009558: embryo sac cellularization	3.14E-03
60	GO:0032877: positive regulation of DNA endoreduplication	3.14E-03
61	GO:0006166: purine ribonucleoside salvage	3.14E-03
62	GO:0070301: cellular response to hydrogen peroxide	3.14E-03
63	GO:0051085: chaperone mediated protein folding requiring cofactor	3.14E-03
64	GO:0006241: CTP biosynthetic process	3.14E-03
65	GO:0030150: protein import into mitochondrial matrix	4.08E-03
66	GO:0006289: nucleotide-excision repair	4.08E-03
67	GO:0009116: nucleoside metabolic process	4.08E-03
68	GO:0032366: intracellular sterol transport	4.23E-03
69	GO:0009165: nucleotide biosynthetic process	4.23E-03
70	GO:0051781: positive regulation of cell division	4.23E-03
71	GO:0042274: ribosomal small subunit biogenesis	4.23E-03
72	GO:0010387: COP9 signalosome assembly	4.23E-03
73	GO:0006183: GTP biosynthetic process	4.23E-03
74	GO:0016226: iron-sulfur cluster assembly	5.44E-03
75	GO:0031167: rRNA methylation	5.44E-03
76	GO:0060776: simple leaf morphogenesis	5.44E-03
77	GO:0044209: AMP salvage	5.44E-03
78	GO:0008283: cell proliferation	6.28E-03
79	GO:0009926: auxin polar transport	6.28E-03
80	GO:0006413: translational initiation	6.69E-03
81	GO:0045040: protein import into mitochondrial outer membrane	6.74E-03
82	GO:0051568: histone H3-K4 methylation	6.74E-03
83	GO:0000470: maturation of LSU-rRNA	6.74E-03
84	GO:0043248: proteasome assembly	6.74E-03
85	GO:0006511: ubiquitin-dependent protein catabolic process	7.00E-03
86	GO:0046686: response to cadmium ion	7.27E-03
87	GO:0000413: protein peptidyl-prolyl isomerization	7.59E-03
88	GO:0045454: cell redox homeostasis	7.91E-03
89	GO:0000911: cytokinesis by cell plate formation	8.15E-03
90	GO:0042026: protein refolding	8.15E-03
91	GO:0009612: response to mechanical stimulus	8.15E-03
92	GO:0006458: 'de novo' protein folding	8.15E-03
93	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	8.15E-03
94	GO:0016444: somatic cell DNA recombination	8.15E-03
95	GO:1901001: negative regulation of response to salt stress	8.15E-03
96	GO:0010183: pollen tube guidance	9.46E-03
97	GO:0000338: protein deneddylation	9.66E-03
98	GO:0035196: production of miRNAs involved in gene silencing by miRNA	9.66E-03
99	GO:0032880: regulation of protein localization	9.66E-03
100	GO:0009690: cytokinin metabolic process	1.13E-02
101	GO:0050821: protein stabilization	1.13E-02
102	GO:0010928: regulation of auxin mediated signaling pathway	1.13E-02
103	GO:0010090: trichome morphogenesis	1.16E-02
104	GO:0009409: response to cold	1.28E-02
105	GO:0001510: RNA methylation	1.29E-02
106	GO:0044030: regulation of DNA methylation	1.29E-02
107	GO:0009808: lignin metabolic process	1.29E-02
108	GO:0006189: 'de novo' IMP biosynthetic process	1.47E-02
109	GO:0048589: developmental growth	1.47E-02
110	GO:0009060: aerobic respiration	1.47E-02
111	GO:0010267: production of ta-siRNAs involved in RNA interference	1.66E-02
112	GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	1.66E-02
113	GO:0006325: chromatin organization	1.85E-02
114	GO:0016441: posttranscriptional gene silencing	1.85E-02
115	GO:0006913: nucleocytoplasmic transport	2.05E-02
116	GO:0072593: reactive oxygen species metabolic process	2.05E-02
117	GO:0009073: aromatic amino acid family biosynthetic process	2.05E-02
118	GO:0015770: sucrose transport	2.05E-02
119	GO:0016485: protein processing	2.05E-02
120	GO:0010015: root morphogenesis	2.05E-02
121	GO:0016925: protein sumoylation	2.26E-02
122	GO:0000724: double-strand break repair via homologous recombination	2.34E-02
123	GO:0009853: photorespiration	2.45E-02
124	GO:0010102: lateral root morphogenesis	2.48E-02
125	GO:0010628: positive regulation of gene expression	2.48E-02
126	GO:2000028: regulation of photoperiodism, flowering	2.48E-02
127	GO:0009908: flower development	2.56E-02
128	GO:0010020: chloroplast fission	2.70E-02
129	GO:0006446: regulation of translational initiation	2.70E-02
130	GO:0048467: gynoecium development	2.70E-02
131	GO:0034976: response to endoplasmic reticulum stress	3.16E-02
132	GO:0006071: glycerol metabolic process	3.16E-02
133	GO:0006406: mRNA export from nucleus	3.41E-02
134	GO:0006487: protein N-linked glycosylation	3.41E-02
135	GO:0009644: response to high light intensity	3.42E-02
136	GO:0006281: DNA repair	3.55E-02
137	GO:0006306: DNA methylation	3.91E-02
138	GO:0003333: amino acid transmembrane transport	3.91E-02
139	GO:0051260: protein homooligomerization	3.91E-02
140	GO:0010431: seed maturation	3.91E-02
141	GO:0006334: nucleosome assembly	3.91E-02
142	GO:0061077: chaperone-mediated protein folding	3.91E-02
143	GO:0007005: mitochondrion organization	4.17E-02
144	GO:0006364: rRNA processing	4.25E-02
145	GO:0051603: proteolysis involved in cellular protein catabolic process	4.40E-02
146	GO:0040007: growth	4.43E-02
147	GO:0006457: protein folding	4.63E-02
148	GO:0010089: xylem development	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	2.11E-150
3	GO:0003729: mRNA binding	7.63E-34
4	GO:0019843: rRNA binding	3.55E-12
5	GO:0008121: ubiquinol-cytochrome-c reductase activity	3.08E-05
6	GO:0015288: porin activity	4.51E-05
7	GO:0008308: voltage-gated anion channel activity	6.29E-05
8	GO:0008097: 5S rRNA binding	1.12E-04
9	GO:0031177: phosphopantetheine binding	4.06E-04
10	GO:0003723: RNA binding	4.34E-04
11	GO:0000035: acyl binding	5.39E-04
12	GO:0004298: threonine-type endopeptidase activity	6.04E-04
13	GO:0047326: inositol tetrakisphosphate 5-kinase activity	6.10E-04
14	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	6.10E-04
15	GO:1990190: peptide-glutamate-N-acetyltransferase activity	6.10E-04
16	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	6.10E-04
17	GO:1990259: histone-glutamine methyltransferase activity	6.10E-04
18	GO:0035614: snRNA stem-loop binding	6.10E-04
19	GO:0000824: inositol tetrakisphosphate 3-kinase activity	6.10E-04
20	GO:1990189: peptide-serine-N-acetyltransferase activity	6.10E-04
21	GO:0003746: translation elongation factor activity	8.07E-04
22	GO:0043022: ribosome binding	8.59E-04
23	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	8.59E-04
24	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.31E-03
25	GO:0004106: chorismate mutase activity	1.31E-03
26	GO:0004826: phenylalanine-tRNA ligase activity	1.31E-03
27	GO:0030619: U1 snRNA binding	1.31E-03
28	GO:0015173: aromatic amino acid transmembrane transporter activity	1.31E-03
29	GO:0004839: ubiquitin activating enzyme activity	1.31E-03
30	GO:0044183: protein binding involved in protein folding	1.99E-03
31	GO:0070181: small ribosomal subunit rRNA binding	2.16E-03
32	GO:0008649: rRNA methyltransferase activity	2.16E-03
33	GO:0008430: selenium binding	2.16E-03
34	GO:0015266: protein channel activity	2.60E-03
35	GO:0004089: carbonate dehydratase activity	2.60E-03
36	GO:0003999: adenine phosphoribosyltransferase activity	3.14E-03
37	GO:0004550: nucleoside diphosphate kinase activity	3.14E-03
38	GO:0004749: ribose phosphate diphosphokinase activity	3.14E-03
39	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.35E-03
40	GO:0070628: proteasome binding	4.23E-03
41	GO:0000993: RNA polymerase II core binding	4.23E-03
42	GO:0004576: oligosaccharyl transferase activity	4.23E-03
43	GO:0010011: auxin binding	4.23E-03
44	GO:0005275: amine transmembrane transporter activity	5.44E-03
45	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	5.44E-03
46	GO:0031386: protein tag	5.44E-03
47	GO:0008641: small protein activating enzyme activity	5.44E-03
48	GO:0031593: polyubiquitin binding	6.74E-03
49	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.65E-03
50	GO:0051920: peroxiredoxin activity	8.15E-03
51	GO:0030515: snoRNA binding	9.66E-03
52	GO:0008235: metalloexopeptidase activity	9.66E-03
53	GO:0042162: telomeric DNA binding	9.66E-03
54	GO:0016209: antioxidant activity	1.13E-02
55	GO:0051082: unfolded protein binding	1.45E-02
56	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.47E-02
57	GO:0015035: protein disulfide oxidoreductase activity	1.50E-02
58	GO:0001055: RNA polymerase II activity	1.66E-02
59	GO:0008047: enzyme activator activity	1.85E-02
60	GO:0008233: peptidase activity	1.95E-02
61	GO:0008515: sucrose transmembrane transporter activity	2.05E-02
62	GO:0004129: cytochrome-c oxidase activity	2.05E-02
63	GO:0008794: arsenate reductase (glutaredoxin) activity	2.05E-02
64	GO:0008327: methyl-CpG binding	2.05E-02
65	GO:0001054: RNA polymerase I activity	2.05E-02
66	GO:0004177: aminopeptidase activity	2.05E-02
67	GO:0000049: tRNA binding	2.26E-02
68	GO:0001056: RNA polymerase III activity	2.26E-02
69	GO:0003697: single-stranded DNA binding	2.45E-02
70	GO:0003725: double-stranded RNA binding	2.48E-02
71	GO:0031072: heat shock protein binding	2.48E-02
72	GO:0051119: sugar transmembrane transporter activity	2.93E-02
73	GO:0051536: iron-sulfur cluster binding	3.41E-02
74	GO:0043130: ubiquitin binding	3.41E-02
75	GO:0051537: 2 iron, 2 sulfur cluster binding	3.42E-02
76	GO:0043621: protein self-association	3.42E-02
77	GO:0003743: translation initiation factor activity	3.50E-02
78	GO:0051087: chaperone binding	3.65E-02
79	GO:0043424: protein histidine kinase binding	3.65E-02
80	GO:0005515: protein binding	3.78E-02
81	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.25E-02
82	GO:0003756: protein disulfide isomerase activity	4.70E-02
83	GO:0003727: single-stranded RNA binding	4.70E-02
84	GO:0047134: protein-disulfide reductase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0043186: P granule	0.00E+00
3	GO:0005675: holo TFIIH complex	0.00E+00
4	GO:0005840: ribosome	2.99E-109
5	GO:0022625: cytosolic large ribosomal subunit	3.29E-95
6	GO:0022626: cytosolic ribosome	1.49E-93
7	GO:0022627: cytosolic small ribosomal subunit	2.86E-61
8	GO:0005829: cytosol	3.93E-37
9	GO:0005737: cytoplasm	5.27E-33
10	GO:0005730: nucleolus	1.58E-31
11	GO:0009506: plasmodesma	5.29E-20
12	GO:0005774: vacuolar membrane	1.11E-19
13	GO:0015934: large ribosomal subunit	1.13E-12
14	GO:0005773: vacuole	2.95E-11
15	GO:0016020: membrane	1.97E-10
16	GO:0015935: small ribosomal subunit	7.21E-08
17	GO:0005618: cell wall	2.79E-06
18	GO:0000502: proteasome complex	5.25E-05
19	GO:0046930: pore complex	6.29E-05
20	GO:0005732: small nucleolar ribonucleoprotein complex	1.56E-04
21	GO:0005886: plasma membrane	2.95E-04
22	GO:0005750: mitochondrial respiratory chain complex III	3.02E-04
23	GO:0009507: chloroplast	3.32E-04
24	GO:0000419: DNA-directed RNA polymerase V complex	4.09E-04
25	GO:0005741: mitochondrial outer membrane	6.04E-04
26	GO:0005839: proteasome core complex	6.04E-04
27	GO:0032044: DSIF complex	6.10E-04
28	GO:0030686: 90S preribosome	6.10E-04
29	GO:0005742: mitochondrial outer membrane translocase complex	1.04E-03
30	GO:0005685: U1 snRNP	1.25E-03
31	GO:0035145: exon-exon junction complex	1.31E-03
32	GO:0031415: NatA complex	1.31E-03
33	GO:0005697: telomerase holoenzyme complex	1.31E-03
34	GO:0071011: precatalytic spliceosome	1.47E-03
35	GO:0015030: Cajal body	1.47E-03
36	GO:0071013: catalytic step 2 spliceosome	1.99E-03
37	GO:0048471: perinuclear region of cytoplasm	1.99E-03
38	GO:0034719: SMN-Sm protein complex	2.16E-03
39	GO:0005853: eukaryotic translation elongation factor 1 complex	2.16E-03
40	GO:0000439: core TFIIH complex	2.16E-03
41	GO:0005665: DNA-directed RNA polymerase II, core complex	2.29E-03
42	GO:0019013: viral nucleocapsid	2.60E-03
43	GO:1990726: Lsm1-7-Pat1 complex	3.14E-03
44	GO:0005758: mitochondrial intermembrane space	4.08E-03
45	GO:0005682: U5 snRNP	4.23E-03
46	GO:0016593: Cdc73/Paf1 complex	4.23E-03
47	GO:0045271: respiratory chain complex I	4.51E-03
48	GO:0070469: respiratory chain	4.51E-03
49	GO:0008250: oligosaccharyltransferase complex	5.44E-03
50	GO:0005687: U4 snRNP	5.44E-03
51	GO:0097526: spliceosomal tri-snRNP complex	5.44E-03
52	GO:0005746: mitochondrial respiratory chain	5.44E-03
53	GO:0005759: mitochondrial matrix	6.45E-03
54	GO:0031428: box C/D snoRNP complex	6.74E-03
55	GO:0005762: mitochondrial large ribosomal subunit	8.15E-03
56	GO:0005801: cis-Golgi network	8.15E-03
57	GO:0005689: U12-type spliceosomal complex	8.15E-03
58	GO:0016272: prefoldin complex	8.15E-03
59	GO:0071004: U2-type prespliceosome	1.13E-02
60	GO:0045273: respiratory chain complex II	1.13E-02
61	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.13E-02
62	GO:0005688: U6 snRNP	1.13E-02
63	GO:0005681: spliceosomal complex	1.14E-02
64	GO:0005747: mitochondrial respiratory chain complex I	1.19E-02
65	GO:0019773: proteasome core complex, alpha-subunit complex	1.29E-02
66	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.29E-02
67	GO:0008180: COP9 signalosome	1.47E-02
68	GO:0005736: DNA-directed RNA polymerase I complex	1.47E-02
69	GO:0005666: DNA-directed RNA polymerase III complex	1.66E-02
70	GO:0005686: U2 snRNP	1.85E-02
71	GO:0000418: DNA-directed RNA polymerase IV complex	1.85E-02
72	GO:0005654: nucleoplasm	1.86E-02
73	GO:0005852: eukaryotic translation initiation factor 3 complex	2.05E-02
74	GO:0008541: proteasome regulatory particle, lid subcomplex	2.05E-02
75	GO:0031307: integral component of mitochondrial outer membrane	2.26E-02
76	GO:0032040: small-subunit processome	2.26E-02
77	GO:0009508: plastid chromosome	2.48E-02
78	GO:0009536: plastid	2.50E-02
79	GO:0005739: mitochondrion	2.93E-02
80	GO:0031966: mitochondrial membrane	3.96E-02