co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G72680

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009398: FMN biosynthetic process	0.00E+00
2	GO:0006511: ubiquitin-dependent protein catabolic process	2.56E-20
3	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.84E-09
4	GO:0030163: protein catabolic process	2.78E-08
5	GO:0051788: response to misfolded protein	5.03E-08
6	GO:0030433: ubiquitin-dependent ERAD pathway	7.82E-07
7	GO:0043248: proteasome assembly	2.51E-06
8	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.10E-06
9	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.64E-05
10	GO:0035266: meristem growth	2.64E-05
11	GO:0007292: female gamete generation	2.64E-05
12	GO:0051603: proteolysis involved in cellular protein catabolic process	2.87E-05
13	GO:0006807: nitrogen compound metabolic process	2.88E-05
14	GO:0019483: beta-alanine biosynthetic process	6.72E-05
15	GO:0006212: uracil catabolic process	6.72E-05
16	GO:0046686: response to cadmium ion	8.79E-05
17	GO:0060968: regulation of gene silencing	1.18E-04
18	GO:0001676: long-chain fatty acid metabolic process	1.76E-04
19	GO:0009647: skotomorphogenesis	1.76E-04
20	GO:0006564: L-serine biosynthetic process	3.07E-04
21	GO:0048831: regulation of shoot system development	3.78E-04
22	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	3.78E-04
23	GO:0048827: phyllome development	3.78E-04
24	GO:0048232: male gamete generation	3.78E-04
25	GO:0042176: regulation of protein catabolic process	3.78E-04
26	GO:0006631: fatty acid metabolic process	4.05E-04
27	GO:0009610: response to symbiotic fungus	5.30E-04
28	GO:0048528: post-embryonic root development	5.30E-04
29	GO:0000338: protein deneddylation	5.30E-04
30	GO:0010078: maintenance of root meristem identity	6.10E-04
31	GO:0031540: regulation of anthocyanin biosynthetic process	6.10E-04
32	GO:0009231: riboflavin biosynthetic process	6.10E-04
33	GO:0009061: anaerobic respiration	6.10E-04
34	GO:0043562: cellular response to nitrogen levels	6.94E-04
35	GO:0009051: pentose-phosphate shunt, oxidative branch	7.80E-04
36	GO:0048829: root cap development	9.59E-04
37	GO:0010015: root morphogenesis	1.05E-03
38	GO:0006006: glucose metabolic process	1.25E-03
39	GO:0009933: meristem structural organization	1.35E-03
40	GO:0090351: seedling development	1.45E-03
41	GO:0010197: polar nucleus fusion	2.65E-03
42	GO:0048825: cotyledon development	2.91E-03
43	GO:0010193: response to ozone	3.05E-03
44	GO:0006914: autophagy	3.47E-03
45	GO:0009408: response to heat	3.81E-03
46	GO:0010311: lateral root formation	4.85E-03
47	GO:0006499: N-terminal protein myristoylation	5.02E-03
48	GO:0010043: response to zinc ion	5.18E-03
49	GO:0045087: innate immune response	5.52E-03
50	GO:0006099: tricarboxylic acid cycle	5.69E-03
51	GO:0009640: photomorphogenesis	6.57E-03
52	GO:0009965: leaf morphogenesis	7.12E-03
53	GO:0006812: cation transport	7.69E-03
54	GO:0009736: cytokinin-activated signaling pathway	8.08E-03
55	GO:0009585: red, far-red light phototransduction	8.08E-03
56	GO:0048367: shoot system development	9.29E-03
57	GO:0009058: biosynthetic process	1.26E-02
58	GO:0010150: leaf senescence	1.52E-02
59	GO:0009739: response to gibberellin	1.65E-02
60	GO:0048366: leaf development	2.33E-02
61	GO:0007275: multicellular organism development	2.70E-02
62	GO:0045454: cell redox homeostasis	2.75E-02
63	GO:0045892: negative regulation of transcription, DNA-templated	2.78E-02
64	GO:0048364: root development	3.29E-02
65	GO:0016310: phosphorylation	3.36E-02
66	GO:0009908: flower development	4.47E-02
67	GO:0009735: response to cytokinin	4.51E-02

Rank	GO Term	Adjusted P value
1	GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity	0.00E+00
2	GO:0008531: riboflavin kinase activity	0.00E+00
3	GO:0003837: beta-ureidopropionase activity	0.00E+00
4	GO:0004298: threonine-type endopeptidase activity	2.78E-19
5	GO:0008233: peptidase activity	4.38E-14
6	GO:0036402: proteasome-activating ATPase activity	4.84E-09
7	GO:0017025: TBP-class protein binding	3.09E-07
8	GO:0019786: Atg8-specific protease activity	2.64E-05
9	GO:0004617: phosphoglycerate dehydrogenase activity	6.72E-05
10	GO:0003919: FMN adenylyltransferase activity	6.72E-05
11	GO:0019779: Atg8 activating enzyme activity	6.72E-05
12	GO:0004148: dihydrolipoyl dehydrogenase activity	1.18E-04
13	GO:0019776: Atg8 ligase activity	2.39E-04
14	GO:0015368: calcium:cation antiporter activity	2.39E-04
15	GO:0004345: glucose-6-phosphate dehydrogenase activity	2.39E-04
16	GO:0015369: calcium:proton antiporter activity	2.39E-04
17	GO:0008177: succinate dehydrogenase (ubiquinone) activity	3.07E-04
18	GO:0000104: succinate dehydrogenase activity	3.07E-04
19	GO:0050897: cobalt ion binding	3.11E-04
20	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	3.78E-04
21	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	3.78E-04
22	GO:0031593: polyubiquitin binding	3.78E-04
23	GO:0102391: decanoate--CoA ligase activity	4.53E-04
24	GO:0004467: long-chain fatty acid-CoA ligase activity	5.30E-04
25	GO:0015491: cation:cation antiporter activity	6.10E-04
26	GO:0016887: ATPase activity	7.64E-04
27	GO:0000989: transcription factor activity, transcription factor binding	7.80E-04
28	GO:0030234: enzyme regulator activity	9.59E-04
29	GO:0004190: aspartic-type endopeptidase activity	1.45E-03
30	GO:0043130: ubiquitin binding	1.67E-03
31	GO:0003714: transcription corepressor activity	1.67E-03
32	GO:0004540: ribonuclease activity	1.90E-03
33	GO:0050660: flavin adenine dinucleotide binding	2.43E-03
34	GO:0016597: amino acid binding	3.76E-03
35	GO:0005524: ATP binding	5.61E-03
36	GO:0050661: NADP binding	6.04E-03
37	GO:0051287: NAD binding	7.50E-03
38	GO:0030170: pyridoxal phosphate binding	1.30E-02
39	GO:0000287: magnesium ion binding	2.05E-02
40	GO:0046982: protein heterodimerization activity	2.05E-02
41	GO:0042803: protein homodimerization activity	2.84E-02
42	GO:0009055: electron carrier activity	3.36E-02
43	GO:0000166: nucleotide binding	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	8.39E-32
2	GO:0005839: proteasome core complex	2.78E-19
3	GO:0019773: proteasome core complex, alpha-subunit complex	1.13E-13
4	GO:0008540: proteasome regulatory particle, base subcomplex	1.85E-10
5	GO:0031597: cytosolic proteasome complex	8.65E-09
6	GO:0031595: nuclear proteasome complex	1.43E-08
7	GO:0005829: cytosol	1.74E-07
8	GO:0022626: cytosolic ribosome	5.46E-06
9	GO:0008541: proteasome regulatory particle, lid subcomplex	2.07E-05
10	GO:0005838: proteasome regulatory particle	1.18E-04
11	GO:0046861: glyoxysomal membrane	1.18E-04
12	GO:0005775: vacuolar lumen	1.76E-04
13	GO:0005776: autophagosome	2.39E-04
14	GO:0005737: cytoplasm	4.19E-04
15	GO:0045273: respiratory chain complex II	6.10E-04
16	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	6.10E-04
17	GO:0000421: autophagosome membrane	6.10E-04
18	GO:0009514: glyoxysome	6.94E-04
19	GO:0008180: COP9 signalosome	7.80E-04
20	GO:0005777: peroxisome	1.07E-03
21	GO:0005634: nucleus	1.38E-03
22	GO:0031410: cytoplasmic vesicle	2.02E-03
23	GO:0005774: vacuolar membrane	2.14E-03
24	GO:0005819: spindle	5.86E-03
25	GO:0005747: mitochondrial respiratory chain complex I	9.29E-03
26	GO:0009524: phragmoplast	1.26E-02
27	GO:0005759: mitochondrial matrix	1.42E-02
28	GO:0009705: plant-type vacuole membrane	1.52E-02
29	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.22E-02
30	GO:0005874: microtubule	2.36E-02
31	GO:0009507: chloroplast	2.97E-02
32	GO:0048046: apoplast	4.96E-02