co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G72490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0009715: chalcone biosynthetic process	0.00E+00
4	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0042493: response to drug	0.00E+00
9	GO:0015727: lactate transport	0.00E+00
10	GO:0006399: tRNA metabolic process	0.00E+00
11	GO:0015979: photosynthesis	5.06E-11
12	GO:0009773: photosynthetic electron transport in photosystem I	5.66E-07
13	GO:0042549: photosystem II stabilization	1.52E-06
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.85E-05
15	GO:0042372: phylloquinone biosynthetic process	1.62E-04
16	GO:0006419: alanyl-tRNA aminoacylation	2.77E-04
17	GO:0010493: Lewis a epitope biosynthetic process	2.77E-04
18	GO:0000476: maturation of 4.5S rRNA	2.77E-04
19	GO:0043953: protein transport by the Tat complex	2.77E-04
20	GO:0000967: rRNA 5'-end processing	2.77E-04
21	GO:0000481: maturation of 5S rRNA	2.77E-04
22	GO:0042371: vitamin K biosynthetic process	2.77E-04
23	GO:0065002: intracellular protein transmembrane transport	2.77E-04
24	GO:0043686: co-translational protein modification	2.77E-04
25	GO:0046167: glycerol-3-phosphate biosynthetic process	2.77E-04
26	GO:0043007: maintenance of rDNA	2.77E-04
27	GO:0034337: RNA folding	2.77E-04
28	GO:0010206: photosystem II repair	3.99E-04
29	GO:0010205: photoinhibition	4.74E-04
30	GO:0034470: ncRNA processing	6.09E-04
31	GO:0035304: regulation of protein dephosphorylation	6.09E-04
32	GO:0009629: response to gravity	6.09E-04
33	GO:0006650: glycerophospholipid metabolic process	6.09E-04
34	GO:0006432: phenylalanyl-tRNA aminoacylation	6.09E-04
35	GO:0018026: peptidyl-lysine monomethylation	6.09E-04
36	GO:0019684: photosynthesis, light reaction	6.38E-04
37	GO:0016311: dephosphorylation	7.10E-04
38	GO:0018298: protein-chromophore linkage	7.57E-04
39	GO:0010628: positive regulation of gene expression	8.26E-04
40	GO:0006810: transport	9.14E-04
41	GO:0046168: glycerol-3-phosphate catabolic process	9.88E-04
42	GO:0009405: pathogenesis	9.88E-04
43	GO:0005977: glycogen metabolic process	9.88E-04
44	GO:0009637: response to blue light	1.02E-03
45	GO:0010114: response to red light	1.39E-03
46	GO:0009768: photosynthesis, light harvesting in photosystem I	1.40E-03
47	GO:0010239: chloroplast mRNA processing	1.41E-03
48	GO:0006072: glycerol-3-phosphate metabolic process	1.41E-03
49	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.41E-03
50	GO:0009650: UV protection	1.41E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.41E-03
52	GO:0006020: inositol metabolic process	1.41E-03
53	GO:0009765: photosynthesis, light harvesting	1.89E-03
54	GO:0015994: chlorophyll metabolic process	1.89E-03
55	GO:0022622: root system development	1.89E-03
56	GO:0006552: leucine catabolic process	1.89E-03
57	GO:0006021: inositol biosynthetic process	1.89E-03
58	GO:0010021: amylopectin biosynthetic process	1.89E-03
59	GO:0015976: carbon utilization	1.89E-03
60	GO:0016558: protein import into peroxisome matrix	2.41E-03
61	GO:0006564: L-serine biosynthetic process	2.41E-03
62	GO:0010236: plastoquinone biosynthetic process	2.41E-03
63	GO:0031365: N-terminal protein amino acid modification	2.41E-03
64	GO:0046855: inositol phosphate dephosphorylation	2.98E-03
65	GO:0042793: transcription from plastid promoter	2.98E-03
66	GO:0003006: developmental process involved in reproduction	2.98E-03
67	GO:0032502: developmental process	3.31E-03
68	GO:1901259: chloroplast rRNA processing	3.58E-03
69	GO:0009772: photosynthetic electron transport in photosystem II	4.23E-03
70	GO:0009769: photosynthesis, light harvesting in photosystem II	4.23E-03
71	GO:1900057: positive regulation of leaf senescence	4.23E-03
72	GO:0009645: response to low light intensity stimulus	4.23E-03
73	GO:0022904: respiratory electron transport chain	4.23E-03
74	GO:0006400: tRNA modification	4.23E-03
75	GO:0032880: regulation of protein localization	4.23E-03
76	GO:0010027: thylakoid membrane organization	4.47E-03
77	GO:0016559: peroxisome fission	4.90E-03
78	GO:0030091: protein repair	4.90E-03
79	GO:0032508: DNA duplex unwinding	4.90E-03
80	GO:0031540: regulation of anthocyanin biosynthetic process	4.90E-03
81	GO:0015995: chlorophyll biosynthetic process	5.26E-03
82	GO:0071482: cellular response to light stimulus	5.62E-03
83	GO:0017004: cytochrome complex assembly	5.62E-03
84	GO:0006281: DNA repair	5.96E-03
85	GO:0048507: meristem development	6.37E-03
86	GO:0010218: response to far red light	6.43E-03
87	GO:0005982: starch metabolic process	7.15E-03
88	GO:0048829: root cap development	7.97E-03
89	GO:0006949: syncytium formation	7.97E-03
90	GO:0006913: nucleocytoplasmic transport	8.82E-03
91	GO:0009089: lysine biosynthetic process via diaminopimelate	8.82E-03
92	GO:0006352: DNA-templated transcription, initiation	8.82E-03
93	GO:0009750: response to fructose	8.82E-03
94	GO:0006790: sulfur compound metabolic process	9.70E-03
95	GO:0005983: starch catabolic process	9.70E-03
96	GO:0010582: floral meristem determinacy	9.70E-03
97	GO:2000012: regulation of auxin polar transport	1.06E-02
98	GO:0018107: peptidyl-threonine phosphorylation	1.06E-02
99	GO:0006094: gluconeogenesis	1.06E-02
100	GO:0009658: chloroplast organization	1.11E-02
101	GO:0006302: double-strand break repair	1.16E-02
102	GO:0048467: gynoecium development	1.16E-02
103	GO:0010020: chloroplast fission	1.16E-02
104	GO:0010207: photosystem II assembly	1.16E-02
105	GO:0009664: plant-type cell wall organization	1.20E-02
106	GO:0019853: L-ascorbic acid biosynthetic process	1.25E-02
107	GO:0010030: positive regulation of seed germination	1.25E-02
108	GO:0046854: phosphatidylinositol phosphorylation	1.25E-02
109	GO:0006833: water transport	1.35E-02
110	GO:0006289: nucleotide-excision repair	1.46E-02
111	GO:0006096: glycolytic process	1.53E-02
112	GO:0019915: lipid storage	1.67E-02
113	GO:0061077: chaperone-mediated protein folding	1.67E-02
114	GO:0009269: response to desiccation	1.67E-02
115	GO:0051321: meiotic cell cycle	1.67E-02
116	GO:0048511: rhythmic process	1.67E-02
117	GO:0009740: gibberellic acid mediated signaling pathway	1.73E-02
118	GO:0019748: secondary metabolic process	1.78E-02
119	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.89E-02
120	GO:0009411: response to UV	1.89E-02
121	GO:0071369: cellular response to ethylene stimulus	1.89E-02
122	GO:0006012: galactose metabolic process	1.89E-02
123	GO:0006284: base-excision repair	2.01E-02
124	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.13E-02
125	GO:0008284: positive regulation of cell proliferation	2.13E-02
126	GO:0042631: cellular response to water deprivation	2.25E-02
127	GO:0034220: ion transmembrane transport	2.25E-02
128	GO:0009958: positive gravitropism	2.37E-02
129	GO:0006520: cellular amino acid metabolic process	2.37E-02
130	GO:0009741: response to brassinosteroid	2.37E-02
131	GO:0009646: response to absence of light	2.50E-02
132	GO:0042752: regulation of circadian rhythm	2.50E-02
133	GO:0009749: response to glucose	2.63E-02
134	GO:0019252: starch biosynthetic process	2.63E-02
135	GO:0008654: phospholipid biosynthetic process	2.63E-02
136	GO:0005975: carbohydrate metabolic process	2.69E-02
137	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.76E-02
138	GO:0071554: cell wall organization or biogenesis	2.76E-02
139	GO:0006635: fatty acid beta-oxidation	2.76E-02
140	GO:0009567: double fertilization forming a zygote and endosperm	3.16E-02
141	GO:0009828: plant-type cell wall loosening	3.16E-02
142	GO:0009911: positive regulation of flower development	3.58E-02
143	GO:0001666: response to hypoxia	3.58E-02
144	GO:0009627: systemic acquired resistance	3.87E-02
145	GO:0009817: defense response to fungus, incompatible interaction	4.33E-02
146	GO:0009813: flavonoid biosynthetic process	4.48E-02
147	GO:0055114: oxidation-reduction process	4.50E-02
148	GO:0009834: plant-type secondary cell wall biogenesis	4.64E-02
149	GO:0006499: N-terminal protein myristoylation	4.64E-02
150	GO:0006811: ion transport	4.64E-02
151	GO:0009826: unidimensional cell growth	4.72E-02
152	GO:0048527: lateral root development	4.79E-02
153	GO:0009631: cold acclimation	4.79E-02
154	GO:0009416: response to light stimulus	4.87E-02
155	GO:0009555: pollen development	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0015129: lactate transmembrane transporter activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
7	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0042623: ATPase activity, coupled	0.00E+00
10	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
11	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
12	GO:0048039: ubiquinone binding	0.00E+00
13	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
14	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
15	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.13E-05
17	GO:0004033: aldo-keto reductase (NADP) activity	2.69E-04
18	GO:0004347: glucose-6-phosphate isomerase activity	2.77E-04
19	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.77E-04
20	GO:0050308: sugar-phosphatase activity	2.77E-04
21	GO:0004813: alanine-tRNA ligase activity	2.77E-04
22	GO:0010242: oxygen evolving activity	2.77E-04
23	GO:0042586: peptide deformylase activity	2.77E-04
24	GO:0019203: carbohydrate phosphatase activity	2.77E-04
25	GO:0004617: phosphoglycerate dehydrogenase activity	6.09E-04
26	GO:0052832: inositol monophosphate 3-phosphatase activity	6.09E-04
27	GO:0008934: inositol monophosphate 1-phosphatase activity	6.09E-04
28	GO:0052833: inositol monophosphate 4-phosphatase activity	6.09E-04
29	GO:0004826: phenylalanine-tRNA ligase activity	6.09E-04
30	GO:0019156: isoamylase activity	6.09E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.09E-04
32	GO:0047746: chlorophyllase activity	6.09E-04
33	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.09E-04
34	GO:0000049: tRNA binding	7.29E-04
35	GO:0003913: DNA photolyase activity	9.88E-04
36	GO:0090729: toxin activity	9.88E-04
37	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.88E-04
38	GO:0031409: pigment binding	1.15E-03
39	GO:0005528: FK506 binding	1.27E-03
40	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.41E-03
41	GO:0016851: magnesium chelatase activity	1.41E-03
42	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.69E-03
43	GO:0004045: aminoacyl-tRNA hydrolase activity	1.89E-03
44	GO:0016987: sigma factor activity	1.89E-03
45	GO:0070628: proteasome binding	1.89E-03
46	GO:0004659: prenyltransferase activity	1.89E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	1.89E-03
48	GO:0001053: plastid sigma factor activity	1.89E-03
49	GO:0008725: DNA-3-methyladenine glycosylase activity	2.41E-03
50	GO:0000293: ferric-chelate reductase activity	2.98E-03
51	GO:0031593: polyubiquitin binding	2.98E-03
52	GO:0042578: phosphoric ester hydrolase activity	2.98E-03
53	GO:0004556: alpha-amylase activity	2.98E-03
54	GO:0016208: AMP binding	2.98E-03
55	GO:0004462: lactoylglutathione lyase activity	2.98E-03
56	GO:2001070: starch binding	2.98E-03
57	GO:0048038: quinone binding	3.09E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.58E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.58E-03
60	GO:0009881: photoreceptor activity	4.23E-03
61	GO:0016597: amino acid binding	4.23E-03
62	GO:0015250: water channel activity	4.47E-03
63	GO:0016168: chlorophyll binding	4.73E-03
64	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	5.62E-03
65	GO:0103095: wax ester synthase activity	5.62E-03
66	GO:0008417: fucosyltransferase activity	6.37E-03
67	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.37E-03
68	GO:0030145: manganese ion binding	6.75E-03
69	GO:0003993: acid phosphatase activity	7.73E-03
70	GO:0015020: glucuronosyltransferase activity	7.97E-03
71	GO:0042802: identical protein binding	8.67E-03
72	GO:0004521: endoribonuclease activity	9.70E-03
73	GO:0008081: phosphoric diester hydrolase activity	1.06E-02
74	GO:0004089: carbonate dehydratase activity	1.06E-02
75	GO:0031072: heat shock protein binding	1.06E-02
76	GO:0008083: growth factor activity	1.16E-02
77	GO:0008266: poly(U) RNA binding	1.16E-02
78	GO:0051287: NAD binding	1.16E-02
79	GO:0043130: ubiquitin binding	1.46E-02
80	GO:0008408: 3'-5' exonuclease activity	1.67E-02
81	GO:0003756: protein disulfide isomerase activity	2.01E-02
82	GO:0003727: single-stranded RNA binding	2.01E-02
83	GO:0003684: damaged DNA binding	3.16E-02
84	GO:0008017: microtubule binding	3.33E-02
85	GO:0016413: O-acetyltransferase activity	3.44E-02
86	GO:0008375: acetylglucosaminyltransferase activity	3.87E-02
87	GO:0046872: metal ion binding	4.18E-02
88	GO:0005096: GTPase activator activity	4.48E-02
89	GO:0016787: hydrolase activity	4.74E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0010368: chloroplast isoamylase complex	0.00E+00
4	GO:0009507: chloroplast	4.59E-19
5	GO:0009535: chloroplast thylakoid membrane	6.44E-17
6	GO:0009534: chloroplast thylakoid	8.15E-12
7	GO:0009570: chloroplast stroma	1.73E-09
8	GO:0009579: thylakoid	1.73E-07
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.74E-07
10	GO:0009941: chloroplast envelope	5.65E-06
11	GO:0009538: photosystem I reaction center	6.48E-06
12	GO:0010287: plastoglobule	8.98E-06
13	GO:0009543: chloroplast thylakoid lumen	1.05E-05
14	GO:0030095: chloroplast photosystem II	5.55E-05
15	GO:0009654: photosystem II oxygen evolving complex	1.08E-04
16	GO:0031361: integral component of thylakoid membrane	2.77E-04
17	GO:0000791: euchromatin	2.77E-04
18	GO:0009522: photosystem I	2.78E-04
19	GO:0019898: extrinsic component of membrane	3.05E-04
20	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.09E-04
21	GO:0030870: Mre11 complex	6.09E-04
22	GO:0010007: magnesium chelatase complex	9.88E-04
23	GO:0033281: TAT protein transport complex	9.88E-04
24	GO:0030076: light-harvesting complex	1.04E-03
25	GO:0031977: thylakoid lumen	1.26E-03
26	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.41E-03
27	GO:0009531: secondary cell wall	1.41E-03
28	GO:0009517: PSII associated light-harvesting complex II	1.89E-03
29	GO:0000795: synaptonemal complex	2.41E-03
30	GO:0009523: photosystem II	2.89E-03
31	GO:0005778: peroxisomal membrane	3.98E-03
32	GO:0009533: chloroplast stromal thylakoid	4.23E-03
33	GO:0031305: integral component of mitochondrial inner membrane	4.90E-03
34	GO:0008180: COP9 signalosome	6.37E-03
35	GO:0055028: cortical microtubule	7.97E-03
36	GO:0005740: mitochondrial envelope	7.97E-03
37	GO:0032040: small-subunit processome	9.70E-03
38	GO:0009508: plastid chromosome	1.06E-02
39	GO:0031969: chloroplast membrane	1.47E-02
40	GO:0000785: chromatin	2.89E-02
41	GO:0032580: Golgi cisterna membrane	3.16E-02
42	GO:0009295: nucleoid	3.30E-02
43	GO:0030529: intracellular ribonucleoprotein complex	3.58E-02
44	GO:0019005: SCF ubiquitin ligase complex	4.33E-02
45	GO:0009707: chloroplast outer membrane	4.33E-02