co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71840

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0030149: sphingolipid catabolic process	0.00E+00
2	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
3	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
4	GO:0044843: cell cycle G1/S phase transition	0.00E+00
5	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
6	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
7	GO:0006412: translation	1.81E-25
8	GO:0000027: ribosomal large subunit assembly	5.22E-10
9	GO:0009735: response to cytokinin	2.58E-06
10	GO:1902626: assembly of large subunit precursor of preribosome	1.05E-05
11	GO:0006511: ubiquitin-dependent protein catabolic process	1.22E-05
12	GO:0006413: translational initiation	1.42E-05
13	GO:0006626: protein targeting to mitochondrion	3.64E-05
14	GO:0046686: response to cadmium ion	4.81E-05
15	GO:0042254: ribosome biogenesis	5.78E-05
16	GO:0030150: protein import into mitochondrial matrix	7.44E-05
17	GO:0061077: chaperone-mediated protein folding	1.00E-04
18	GO:0006458: 'de novo' protein folding	1.39E-04
19	GO:0009554: megasporogenesis	1.39E-04
20	GO:0009955: adaxial/abaxial pattern specification	1.39E-04
21	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.32E-04
22	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	2.51E-04
23	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.51E-04
24	GO:0006434: seryl-tRNA aminoacylation	2.51E-04
25	GO:0009967: positive regulation of signal transduction	5.53E-04
26	GO:0051788: response to misfolded protein	5.53E-04
27	GO:0015786: UDP-glucose transport	5.53E-04
28	GO:0019752: carboxylic acid metabolic process	5.53E-04
29	GO:0006435: threonyl-tRNA aminoacylation	5.53E-04
30	GO:0045041: protein import into mitochondrial intermembrane space	5.53E-04
31	GO:0046168: glycerol-3-phosphate catabolic process	8.99E-04
32	GO:0032940: secretion by cell	8.99E-04
33	GO:0010253: UDP-rhamnose biosynthetic process	8.99E-04
34	GO:0002181: cytoplasmic translation	8.99E-04
35	GO:0045793: positive regulation of cell size	8.99E-04
36	GO:0015783: GDP-fucose transport	8.99E-04
37	GO:0008283: cell proliferation	1.16E-03
38	GO:0072334: UDP-galactose transmembrane transport	1.28E-03
39	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	1.28E-03
40	GO:0006072: glycerol-3-phosphate metabolic process	1.28E-03
41	GO:0009647: skotomorphogenesis	1.28E-03
42	GO:0006164: purine nucleotide biosynthetic process	1.28E-03
43	GO:0032981: mitochondrial respiratory chain complex I assembly	1.28E-03
44	GO:0006168: adenine salvage	1.28E-03
45	GO:0006882: cellular zinc ion homeostasis	1.28E-03
46	GO:0001676: long-chain fatty acid metabolic process	1.28E-03
47	GO:0046513: ceramide biosynthetic process	1.28E-03
48	GO:0032877: positive regulation of DNA endoreduplication	1.28E-03
49	GO:0046836: glycolipid transport	1.28E-03
50	GO:0033617: mitochondrial respiratory chain complex IV assembly	1.28E-03
51	GO:0006166: purine ribonucleoside salvage	1.28E-03
52	GO:0051781: positive regulation of cell division	1.71E-03
53	GO:0042274: ribosomal small subunit biogenesis	1.71E-03
54	GO:0010387: COP9 signalosome assembly	1.71E-03
55	GO:0051603: proteolysis involved in cellular protein catabolic process	1.77E-03
56	GO:0042147: retrograde transport, endosome to Golgi	1.87E-03
57	GO:0009793: embryo development ending in seed dormancy	1.90E-03
58	GO:0000413: protein peptidyl-prolyl isomerization	2.02E-03
59	GO:0071493: cellular response to UV-B	2.19E-03
60	GO:0036065: fucosylation	2.19E-03
61	GO:0006564: L-serine biosynthetic process	2.19E-03
62	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.19E-03
63	GO:1902183: regulation of shoot apical meristem development	2.19E-03
64	GO:0044209: AMP salvage	2.19E-03
65	GO:0045116: protein neddylation	2.19E-03
66	GO:0009553: embryo sac development	2.55E-03
67	GO:0043248: proteasome assembly	2.70E-03
68	GO:0010315: auxin efflux	2.70E-03
69	GO:0048831: regulation of shoot system development	2.70E-03
70	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.70E-03
71	GO:0030163: protein catabolic process	3.05E-03
72	GO:1901001: negative regulation of response to salt stress	3.24E-03
73	GO:0042026: protein refolding	3.24E-03
74	GO:0009612: response to mechanical stimulus	3.24E-03
75	GO:0000054: ribosomal subunit export from nucleus	3.24E-03
76	GO:0000245: spliceosomal complex assembly	3.24E-03
77	GO:0000338: protein deneddylation	3.82E-03
78	GO:0009610: response to symbiotic fungus	3.82E-03
79	GO:0048528: post-embryonic root development	3.82E-03
80	GO:0009690: cytokinin metabolic process	4.44E-03
81	GO:0050821: protein stabilization	4.44E-03
82	GO:0031540: regulation of anthocyanin biosynthetic process	4.44E-03
83	GO:0006102: isocitrate metabolic process	4.44E-03
84	GO:0009651: response to salt stress	4.58E-03
85	GO:0001558: regulation of cell growth	5.08E-03
86	GO:0006367: transcription initiation from RNA polymerase II promoter	5.08E-03
87	GO:0010100: negative regulation of photomorphogenesis	5.08E-03
88	GO:0010093: specification of floral organ identity	5.08E-03
89	GO:0009245: lipid A biosynthetic process	5.75E-03
90	GO:0006189: 'de novo' IMP biosynthetic process	5.75E-03
91	GO:0015780: nucleotide-sugar transport	5.75E-03
92	GO:0046685: response to arsenic-containing substance	5.75E-03
93	GO:0042761: very long-chain fatty acid biosynthetic process	6.46E-03
94	GO:0010449: root meristem growth	6.46E-03
95	GO:0071577: zinc II ion transmembrane transport	6.46E-03
96	GO:0051555: flavonol biosynthetic process	7.20E-03
97	GO:0006913: nucleocytoplasmic transport	7.96E-03
98	GO:0072593: reactive oxygen species metabolic process	7.96E-03
99	GO:0015770: sucrose transport	7.96E-03
100	GO:0048229: gametophyte development	7.96E-03
101	GO:0010015: root morphogenesis	7.96E-03
102	GO:0006820: anion transport	8.75E-03
103	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	8.75E-03
104	GO:0008643: carbohydrate transport	8.92E-03
105	GO:0009965: leaf morphogenesis	9.26E-03
106	GO:0048467: gynoecium development	1.04E-02
107	GO:0002237: response to molecule of bacterial origin	1.04E-02
108	GO:0006364: rRNA processing	1.11E-02
109	GO:0090351: seedling development	1.13E-02
110	GO:0009969: xyloglucan biosynthetic process	1.13E-02
111	GO:0009225: nucleotide-sugar metabolic process	1.13E-02
112	GO:0034976: response to endoplasmic reticulum stress	1.22E-02
113	GO:0006289: nucleotide-excision repair	1.31E-02
114	GO:0009116: nucleoside metabolic process	1.31E-02
115	GO:0051302: regulation of cell division	1.41E-02
116	GO:0051260: protein homooligomerization	1.50E-02
117	GO:0010431: seed maturation	1.50E-02
118	GO:0030433: ubiquitin-dependent ERAD pathway	1.60E-02
119	GO:0007005: mitochondrion organization	1.60E-02
120	GO:0006457: protein folding	1.68E-02
121	GO:0071215: cellular response to abscisic acid stimulus	1.71E-02
122	GO:0040007: growth	1.71E-02
123	GO:0010584: pollen exine formation	1.81E-02
124	GO:0042127: regulation of cell proliferation	1.81E-02
125	GO:0009408: response to heat	1.99E-02
126	GO:0008033: tRNA processing	2.02E-02
127	GO:0010118: stomatal movement	2.02E-02
128	GO:0006606: protein import into nucleus	2.02E-02
129	GO:0006414: translational elongation	2.07E-02
130	GO:0048364: root development	2.10E-02
131	GO:0008360: regulation of cell shape	2.14E-02
132	GO:0006520: cellular amino acid metabolic process	2.14E-02
133	GO:0010197: polar nucleus fusion	2.14E-02
134	GO:0048868: pollen tube development	2.14E-02
135	GO:0010183: pollen tube guidance	2.36E-02
136	GO:0048825: cotyledon development	2.36E-02
137	GO:0009749: response to glucose	2.36E-02
138	GO:0009556: microsporogenesis	2.36E-02
139	GO:0080156: mitochondrial mRNA modification	2.48E-02
140	GO:0010193: response to ozone	2.48E-02
141	GO:0006891: intra-Golgi vesicle-mediated transport	2.48E-02
142	GO:0032502: developmental process	2.60E-02
143	GO:0009567: double fertilization forming a zygote and endosperm	2.85E-02
144	GO:0009734: auxin-activated signaling pathway	3.06E-02
145	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.08E-02
146	GO:0000910: cytokinesis	3.10E-02
147	GO:0016579: protein deubiquitination	3.10E-02
148	GO:0009627: systemic acquired resistance	3.49E-02
149	GO:0016049: cell growth	3.76E-02
150	GO:0009832: plant-type cell wall biogenesis	4.04E-02
151	GO:0006811: ion transport	4.18E-02
152	GO:0009631: cold acclimation	4.32E-02
153	GO:0010043: response to zinc ion	4.32E-02
154	GO:0006099: tricarboxylic acid cycle	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
2	GO:0052873: FMN reductase (NADPH) activity	0.00E+00
3	GO:0008752: FMN reductase activity	0.00E+00
4	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
5	GO:0016881: acid-amino acid ligase activity	0.00E+00
6	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
7	GO:0003735: structural constituent of ribosome	1.28E-33
8	GO:0004298: threonine-type endopeptidase activity	1.26E-11
9	GO:0003729: mRNA binding	1.40E-11
10	GO:0008233: peptidase activity	3.49E-09
11	GO:0003746: translation elongation factor activity	5.51E-06
12	GO:0019843: rRNA binding	6.92E-06
13	GO:0008097: 5S rRNA binding	2.38E-05
14	GO:0003743: translation initiation factor activity	2.64E-05
15	GO:0004656: procollagen-proline 4-dioxygenase activity	1.39E-04
16	GO:0004828: serine-tRNA ligase activity	2.51E-04
17	GO:0047326: inositol tetrakisphosphate 5-kinase activity	2.51E-04
18	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	2.51E-04
19	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	2.51E-04
20	GO:0000824: inositol tetrakisphosphate 3-kinase activity	2.51E-04
21	GO:0008805: carbon-monoxide oxygenase activity	5.53E-04
22	GO:0004829: threonine-tRNA ligase activity	5.53E-04
23	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.53E-04
24	GO:0005078: MAP-kinase scaffold activity	5.53E-04
25	GO:0008517: folic acid transporter activity	5.53E-04
26	GO:0050291: sphingosine N-acyltransferase activity	5.53E-04
27	GO:0004618: phosphoglycerate kinase activity	5.53E-04
28	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.53E-04
29	GO:0019781: NEDD8 activating enzyme activity	5.53E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	5.53E-04
31	GO:0010280: UDP-L-rhamnose synthase activity	5.53E-04
32	GO:0044183: protein binding involved in protein folding	5.54E-04
33	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.99E-04
34	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.99E-04
35	GO:0005457: GDP-fucose transmembrane transporter activity	8.99E-04
36	GO:0015462: ATPase-coupled protein transmembrane transporter activity	8.99E-04
37	GO:0031418: L-ascorbic acid binding	1.11E-03
38	GO:0003999: adenine phosphoribosyltransferase activity	1.28E-03
39	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.28E-03
40	GO:0005460: UDP-glucose transmembrane transporter activity	1.28E-03
41	GO:0017089: glycolipid transporter activity	1.28E-03
42	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.41E-03
43	GO:0051287: NAD binding	1.48E-03
44	GO:0070628: proteasome binding	1.71E-03
45	GO:0015368: calcium:cation antiporter activity	1.71E-03
46	GO:0010011: auxin binding	1.71E-03
47	GO:0051861: glycolipid binding	1.71E-03
48	GO:0015369: calcium:proton antiporter activity	1.71E-03
49	GO:0008514: organic anion transmembrane transporter activity	1.73E-03
50	GO:0005525: GTP binding	2.04E-03
51	GO:0005459: UDP-galactose transmembrane transporter activity	2.19E-03
52	GO:0008641: small protein activating enzyme activity	2.19E-03
53	GO:0004040: amidase activity	2.19E-03
54	GO:0010181: FMN binding	2.34E-03
55	GO:0016853: isomerase activity	2.34E-03
56	GO:0051082: unfolded protein binding	2.65E-03
57	GO:0031593: polyubiquitin binding	2.70E-03
58	GO:0031177: phosphopantetheine binding	2.70E-03
59	GO:0036402: proteasome-activating ATPase activity	2.70E-03
60	GO:0102391: decanoate--CoA ligase activity	3.24E-03
61	GO:0000035: acyl binding	3.24E-03
62	GO:0008237: metallopeptidase activity	3.44E-03
63	GO:0004467: long-chain fatty acid-CoA ligase activity	3.82E-03
64	GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity	3.82E-03
65	GO:0016831: carboxy-lyase activity	3.82E-03
66	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.82E-03
67	GO:0008235: metalloexopeptidase activity	3.82E-03
68	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	4.44E-03
69	GO:0015491: cation:cation antiporter activity	4.44E-03
70	GO:0015288: porin activity	4.44E-03
71	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	5.04E-03
72	GO:0008308: voltage-gated anion channel activity	5.08E-03
73	GO:0008135: translation factor activity, RNA binding	5.08E-03
74	GO:0000989: transcription factor activity, transcription factor binding	5.75E-03
75	GO:0008417: fucosyltransferase activity	5.75E-03
76	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	6.39E-03
77	GO:0045309: protein phosphorylated amino acid binding	6.46E-03
78	GO:0008515: sucrose transmembrane transporter activity	7.96E-03
79	GO:0019904: protein domain specific binding	7.96E-03
80	GO:0008327: methyl-CpG binding	7.96E-03
81	GO:0008559: xenobiotic-transporting ATPase activity	7.96E-03
82	GO:0016887: ATPase activity	9.26E-03
83	GO:0015266: protein channel activity	9.57E-03
84	GO:0031072: heat shock protein binding	9.57E-03
85	GO:0017025: TBP-class protein binding	1.13E-02
86	GO:0051119: sugar transmembrane transporter activity	1.13E-02
87	GO:0000166: nucleotide binding	1.14E-02
88	GO:0043130: ubiquitin binding	1.31E-02
89	GO:0005528: FK506 binding	1.31E-02
90	GO:0005385: zinc ion transmembrane transporter activity	1.31E-02
91	GO:0051087: chaperone binding	1.41E-02
92	GO:0005515: protein binding	1.45E-02
93	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.50E-02
94	GO:0003756: protein disulfide isomerase activity	1.81E-02
95	GO:0003924: GTPase activity	1.99E-02
96	GO:0046873: metal ion transmembrane transporter activity	2.14E-02
97	GO:0004872: receptor activity	2.36E-02
98	GO:0003684: damaged DNA binding	2.85E-02
99	GO:0008483: transaminase activity	2.97E-02
100	GO:0016597: amino acid binding	3.10E-02
101	GO:0005524: ATP binding	4.01E-02
102	GO:0046982: protein heterodimerization activity	4.16E-02
103	GO:0050897: cobalt ion binding	4.32E-02
104	GO:0003697: single-stranded DNA binding	4.61E-02
105	GO:0003993: acid phosphatase activity	4.76E-02
106	GO:0016491: oxidoreductase activity	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0005674: transcription factor TFIIF complex	0.00E+00
3	GO:0022626: cytosolic ribosome	2.39E-28
4	GO:0022625: cytosolic large ribosomal subunit	3.33E-20
5	GO:0005829: cytosol	4.66E-19
6	GO:0005840: ribosome	1.66E-17
7	GO:0022627: cytosolic small ribosomal subunit	1.28E-15
8	GO:0000502: proteasome complex	3.28E-14
9	GO:0005730: nucleolus	2.90E-13
10	GO:0015934: large ribosomal subunit	2.35E-12
11	GO:0005839: proteasome core complex	1.26E-11
12	GO:0005774: vacuolar membrane	1.21E-10
13	GO:0009506: plasmodesma	1.83E-10
14	GO:0005737: cytoplasm	1.88E-09
15	GO:0019773: proteasome core complex, alpha-subunit complex	7.80E-08
16	GO:0005773: vacuole	1.58E-07
17	GO:0016020: membrane	4.40E-07
18	GO:0005886: plasma membrane	8.00E-07
19	GO:0005794: Golgi apparatus	5.21E-04
20	GO:0046861: glyoxysomal membrane	8.99E-04
21	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.28E-03
22	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.73E-03
23	GO:0005851: eukaryotic translation initiation factor 2B complex	2.70E-03
24	GO:0030904: retromer complex	2.70E-03
25	GO:0031597: cytosolic proteasome complex	3.24E-03
26	GO:0031595: nuclear proteasome complex	3.82E-03
27	GO:0005788: endoplasmic reticulum lumen	4.09E-03
28	GO:0005783: endoplasmic reticulum	4.36E-03
29	GO:0005759: mitochondrial matrix	4.70E-03
30	GO:0009507: chloroplast	4.87E-03
31	GO:0005742: mitochondrial outer membrane translocase complex	5.08E-03
32	GO:0046930: pore complex	5.08E-03
33	GO:0009514: glyoxysome	5.08E-03
34	GO:0008180: COP9 signalosome	5.75E-03
35	GO:0008540: proteasome regulatory particle, base subcomplex	6.46E-03
36	GO:0005852: eukaryotic translation initiation factor 3 complex	7.96E-03
37	GO:0008541: proteasome regulatory particle, lid subcomplex	7.96E-03
38	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.04E-02
39	GO:0005635: nuclear envelope	1.19E-02
40	GO:0005769: early endosome	1.22E-02
41	GO:0005758: mitochondrial intermembrane space	1.31E-02
42	GO:0070469: respiratory chain	1.41E-02
43	GO:0005741: mitochondrial outer membrane	1.50E-02
44	GO:0005618: cell wall	1.75E-02
45	GO:0005743: mitochondrial inner membrane	1.82E-02
46	GO:0005623: cell	2.05E-02
47	GO:0005789: endoplasmic reticulum membrane	2.13E-02
48	GO:0005802: trans-Golgi network	2.31E-02
49	GO:0009705: plant-type vacuole membrane	2.75E-02
50	GO:0032580: Golgi cisterna membrane	2.85E-02
51	GO:0030529: intracellular ribonucleoprotein complex	3.23E-02
52	GO:0005739: mitochondrion	4.08E-02
53	GO:0000325: plant-type vacuole	4.32E-02