co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G71720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0017038: protein import	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0090279: regulation of calcium ion import	0.00E+00
6	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
7	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
8	GO:0071474: cellular hyperosmotic response	0.00E+00
9	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
10	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
11	GO:2000505: regulation of energy homeostasis	0.00E+00
12	GO:0030155: regulation of cell adhesion	0.00E+00
13	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
14	GO:0061635: regulation of protein complex stability	0.00E+00
15	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
16	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
17	GO:0010027: thylakoid membrane organization	1.28E-10
18	GO:0006000: fructose metabolic process	6.87E-09
19	GO:0015979: photosynthesis	1.02E-08
20	GO:0009773: photosynthetic electron transport in photosystem I	1.19E-07
21	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.41E-06
22	GO:0006002: fructose 6-phosphate metabolic process	2.85E-06
23	GO:0006546: glycine catabolic process	2.25E-05
24	GO:0045038: protein import into chloroplast thylakoid membrane	3.65E-05
25	GO:0061077: chaperone-mediated protein folding	4.40E-05
26	GO:0010190: cytochrome b6f complex assembly	5.43E-05
27	GO:0010196: nonphotochemical quenching	1.01E-04
28	GO:0009658: chloroplast organization	1.29E-04
29	GO:0005978: glycogen biosynthetic process	1.30E-04
30	GO:0032544: plastid translation	1.62E-04
31	GO:0000476: maturation of 4.5S rRNA	1.71E-04
32	GO:0000967: rRNA 5'-end processing	1.71E-04
33	GO:0046520: sphingoid biosynthetic process	1.71E-04
34	GO:0000481: maturation of 5S rRNA	1.71E-04
35	GO:0042371: vitamin K biosynthetic process	1.71E-04
36	GO:0043609: regulation of carbon utilization	1.71E-04
37	GO:0043007: maintenance of rDNA	1.71E-04
38	GO:1902458: positive regulation of stomatal opening	1.71E-04
39	GO:0034337: RNA folding	1.71E-04
40	GO:0010206: photosystem II repair	1.98E-04
41	GO:0015995: chlorophyll biosynthetic process	2.74E-04
42	GO:0016311: dephosphorylation	2.94E-04
43	GO:0045037: protein import into chloroplast stroma	3.73E-04
44	GO:0005983: starch catabolic process	3.73E-04
45	GO:0019388: galactose catabolic process	3.87E-04
46	GO:0018026: peptidyl-lysine monomethylation	3.87E-04
47	GO:0090342: regulation of cell aging	3.87E-04
48	GO:0097054: L-glutamate biosynthetic process	3.87E-04
49	GO:1903426: regulation of reactive oxygen species biosynthetic process	3.87E-04
50	GO:0051262: protein tetramerization	3.87E-04
51	GO:0034470: ncRNA processing	3.87E-04
52	GO:0006094: gluconeogenesis	4.24E-04
53	GO:0005986: sucrose biosynthetic process	4.24E-04
54	GO:0010207: photosystem II assembly	4.79E-04
55	GO:0090391: granum assembly	6.32E-04
56	GO:0006518: peptide metabolic process	6.32E-04
57	GO:0048281: inflorescence morphogenesis	6.32E-04
58	GO:0006418: tRNA aminoacylation for protein translation	7.27E-04
59	GO:0006537: glutamate biosynthetic process	9.04E-04
60	GO:0010148: transpiration	9.04E-04
61	GO:0009590: detection of gravity	9.04E-04
62	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.04E-04
63	GO:0009735: response to cytokinin	9.79E-04
64	GO:0016117: carotenoid biosynthetic process	1.10E-03
65	GO:0051205: protein insertion into membrane	1.20E-03
66	GO:0010021: amylopectin biosynthetic process	1.20E-03
67	GO:0010109: regulation of photosynthesis	1.20E-03
68	GO:0019676: ammonia assimilation cycle	1.20E-03
69	GO:0015976: carbon utilization	1.20E-03
70	GO:0051322: anaphase	1.20E-03
71	GO:0019464: glycine decarboxylation via glycine cleavage system	1.20E-03
72	GO:0006109: regulation of carbohydrate metabolic process	1.20E-03
73	GO:0045727: positive regulation of translation	1.20E-03
74	GO:0015994: chlorophyll metabolic process	1.20E-03
75	GO:0019252: starch biosynthetic process	1.47E-03
76	GO:0032543: mitochondrial translation	1.52E-03
77	GO:0010236: plastoquinone biosynthetic process	1.52E-03
78	GO:0016123: xanthophyll biosynthetic process	1.52E-03
79	GO:0042793: transcription from plastid promoter	1.87E-03
80	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.87E-03
81	GO:0042372: phylloquinone biosynthetic process	2.24E-03
82	GO:0006458: 'de novo' protein folding	2.24E-03
83	GO:0030488: tRNA methylation	2.24E-03
84	GO:0042026: protein refolding	2.24E-03
85	GO:0070370: cellular heat acclimation	2.64E-03
86	GO:0010103: stomatal complex morphogenesis	2.64E-03
87	GO:0009772: photosynthetic electron transport in photosystem II	2.64E-03
88	GO:0006605: protein targeting	3.06E-03
89	GO:0032508: DNA duplex unwinding	3.06E-03
90	GO:2000070: regulation of response to water deprivation	3.06E-03
91	GO:0000105: histidine biosynthetic process	3.06E-03
92	GO:0016559: peroxisome fission	3.06E-03
93	GO:0009642: response to light intensity	3.06E-03
94	GO:0001558: regulation of cell growth	3.50E-03
95	GO:0017004: cytochrome complex assembly	3.50E-03
96	GO:0015996: chlorophyll catabolic process	3.50E-03
97	GO:0007186: G-protein coupled receptor signaling pathway	3.50E-03
98	GO:0005982: starch metabolic process	4.44E-03
99	GO:0019684: photosynthesis, light reaction	5.45E-03
100	GO:0006415: translational termination	5.45E-03
101	GO:0009089: lysine biosynthetic process via diaminopimelate	5.45E-03
102	GO:0009073: aromatic amino acid family biosynthetic process	5.45E-03
103	GO:0043085: positive regulation of catalytic activity	5.45E-03
104	GO:0000272: polysaccharide catabolic process	5.45E-03
105	GO:0009750: response to fructose	5.45E-03
106	GO:0018119: peptidyl-cysteine S-nitrosylation	5.45E-03
107	GO:0006364: rRNA processing	6.43E-03
108	GO:0006006: glucose metabolic process	6.54E-03
109	GO:0030036: actin cytoskeleton organization	6.54E-03
110	GO:0009409: response to cold	6.69E-03
111	GO:0010020: chloroplast fission	7.11E-03
112	GO:0019253: reductive pentose-phosphate cycle	7.11E-03
113	GO:0045454: cell redox homeostasis	7.62E-03
114	GO:0005985: sucrose metabolic process	7.69E-03
115	GO:0006810: transport	7.70E-03
116	GO:0000162: tryptophan biosynthetic process	8.30E-03
117	GO:0009944: polarity specification of adaxial/abaxial axis	8.92E-03
118	GO:0009768: photosynthesis, light harvesting in photosystem I	9.56E-03
119	GO:0051302: regulation of cell division	9.56E-03
120	GO:0016575: histone deacetylation	9.56E-03
121	GO:0001944: vasculature development	1.16E-02
122	GO:0009561: megagametogenesis	1.23E-02
123	GO:0042631: cellular response to water deprivation	1.37E-02
124	GO:0006662: glycerol ether metabolic process	1.45E-02
125	GO:0010182: sugar mediated signaling pathway	1.45E-02
126	GO:0009646: response to absence of light	1.52E-02
127	GO:0007623: circadian rhythm	1.59E-02
128	GO:0071554: cell wall organization or biogenesis	1.68E-02
129	GO:0009793: embryo development ending in seed dormancy	1.69E-02
130	GO:0010583: response to cyclopentenone	1.76E-02
131	GO:0010090: trichome morphogenesis	1.84E-02
132	GO:1901657: glycosyl compound metabolic process	1.84E-02
133	GO:0009416: response to light stimulus	2.06E-02
134	GO:0000910: cytokinesis	2.10E-02
135	GO:0055114: oxidation-reduction process	2.34E-02
136	GO:0009627: systemic acquired resistance	2.36E-02
137	GO:0018298: protein-chromophore linkage	2.64E-02
138	GO:0009813: flavonoid biosynthetic process	2.73E-02
139	GO:0006499: N-terminal protein myristoylation	2.83E-02
140	GO:0010218: response to far red light	2.83E-02
141	GO:0009637: response to blue light	3.12E-02
142	GO:0009853: photorespiration	3.12E-02
143	GO:0034599: cellular response to oxidative stress	3.22E-02
144	GO:0030001: metal ion transport	3.43E-02
145	GO:0006631: fatty acid metabolic process	3.53E-02
146	GO:0009640: photomorphogenesis	3.74E-02
147	GO:0010114: response to red light	3.74E-02
148	GO:0009744: response to sucrose	3.74E-02
149	GO:0009965: leaf morphogenesis	4.06E-02
150	GO:0009664: plant-type cell wall organization	4.40E-02
151	GO:0042742: defense response to bacterium	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
2	GO:0042903: tubulin deacetylase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0043014: alpha-tubulin binding	0.00E+00
8	GO:0004823: leucine-tRNA ligase activity	0.00E+00
9	GO:0046408: chlorophyll synthetase activity	0.00E+00
10	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
11	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
12	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
13	GO:0051721: protein phosphatase 2A binding	0.00E+00
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.41E-06
15	GO:0016851: magnesium chelatase activity	1.21E-05
16	GO:0005528: FK506 binding	3.22E-05
17	GO:2001070: starch binding	5.43E-05
18	GO:0019203: carbohydrate phosphatase activity	1.71E-04
19	GO:0016041: glutamate synthase (ferredoxin) activity	1.71E-04
20	GO:0000170: sphingosine hydroxylase activity	1.71E-04
21	GO:0005227: calcium activated cation channel activity	1.71E-04
22	GO:0050308: sugar-phosphatase activity	1.71E-04
23	GO:0019843: rRNA binding	2.55E-04
24	GO:0003844: 1,4-alpha-glucan branching enzyme activity	3.87E-04
25	GO:0004614: phosphoglucomutase activity	3.87E-04
26	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	3.87E-04
27	GO:0010291: carotene beta-ring hydroxylase activity	3.87E-04
28	GO:0047746: chlorophyllase activity	3.87E-04
29	GO:0010297: heteropolysaccharide binding	3.87E-04
30	GO:0004047: aminomethyltransferase activity	3.87E-04
31	GO:0042284: sphingolipid delta-4 desaturase activity	3.87E-04
32	GO:0031072: heat shock protein binding	4.24E-04
33	GO:0005504: fatty acid binding	6.32E-04
34	GO:0015462: ATPase-coupled protein transmembrane transporter activity	6.32E-04
35	GO:0043169: cation binding	6.32E-04
36	GO:0002161: aminoacyl-tRNA editing activity	6.32E-04
37	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.19E-04
38	GO:0048487: beta-tubulin binding	9.04E-04
39	GO:0016149: translation release factor activity, codon specific	9.04E-04
40	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	9.04E-04
41	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.04E-04
42	GO:0004812: aminoacyl-tRNA ligase activity	1.10E-03
43	GO:0019199: transmembrane receptor protein kinase activity	1.20E-03
44	GO:0045430: chalcone isomerase activity	1.20E-03
45	GO:0042277: peptide binding	1.20E-03
46	GO:0004659: prenyltransferase activity	1.20E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	1.20E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.20E-03
49	GO:0051082: unfolded protein binding	1.33E-03
50	GO:0051538: 3 iron, 4 sulfur cluster binding	1.52E-03
51	GO:0005261: cation channel activity	2.24E-03
52	GO:0004017: adenylate kinase activity	2.24E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	3.06E-03
54	GO:0008173: RNA methyltransferase activity	3.50E-03
55	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	3.50E-03
56	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.95E-03
57	GO:0003747: translation release factor activity	3.95E-03
58	GO:0000287: magnesium ion binding	4.51E-03
59	GO:0016787: hydrolase activity	4.66E-03
60	GO:0008047: enzyme activator activity	4.93E-03
61	GO:0044183: protein binding involved in protein folding	5.45E-03
62	GO:0016491: oxidoreductase activity	6.37E-03
63	GO:0004089: carbonate dehydratase activity	6.54E-03
64	GO:0004565: beta-galactosidase activity	6.54E-03
65	GO:0031409: pigment binding	8.30E-03
66	GO:0004857: enzyme inhibitor activity	8.92E-03
67	GO:0004407: histone deacetylase activity	8.92E-03
68	GO:0003964: RNA-directed DNA polymerase activity	1.02E-02
69	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.18E-02
70	GO:0003756: protein disulfide isomerase activity	1.23E-02
71	GO:0047134: protein-disulfide reductase activity	1.30E-02
72	GO:0003735: structural constituent of ribosome	1.30E-02
73	GO:0050662: coenzyme binding	1.52E-02
74	GO:0004791: thioredoxin-disulfide reductase activity	1.52E-02
75	GO:0008017: microtubule binding	1.66E-02
76	GO:0048038: quinone binding	1.68E-02
77	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.84E-02
78	GO:0005200: structural constituent of cytoskeleton	2.01E-02
79	GO:0008483: transaminase activity	2.01E-02
80	GO:0042802: identical protein binding	2.02E-02
81	GO:0016413: O-acetyltransferase activity	2.10E-02
82	GO:0016168: chlorophyll binding	2.27E-02
83	GO:0102483: scopolin beta-glucosidase activity	2.45E-02
84	GO:0016788: hydrolase activity, acting on ester bonds	2.51E-02
85	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.64E-02
86	GO:0004222: metalloendopeptidase activity	2.83E-02
87	GO:0003993: acid phosphatase activity	3.22E-02
88	GO:0008422: beta-glucosidase activity	3.33E-02
89	GO:0043621: protein self-association	3.96E-02
90	GO:0003924: GTPase activity	4.49E-02
91	GO:0005506: iron ion binding	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	1.59E-60
3	GO:0009534: chloroplast thylakoid	3.91E-35
4	GO:0009535: chloroplast thylakoid membrane	9.49E-33
5	GO:0009570: chloroplast stroma	2.40E-29
6	GO:0009941: chloroplast envelope	5.76E-24
7	GO:0009543: chloroplast thylakoid lumen	1.80E-12
8	GO:0009579: thylakoid	3.08E-10
9	GO:0031977: thylakoid lumen	6.73E-08
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.41E-06
11	GO:0010007: magnesium chelatase complex	5.25E-06
12	GO:0010319: stromule	9.12E-06
13	GO:0048046: apoplast	1.33E-04
14	GO:0009515: granal stacked thylakoid	1.71E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.98E-04
16	GO:0031969: chloroplast membrane	1.99E-04
17	GO:0009508: plastid chromosome	4.24E-04
18	GO:0030095: chloroplast photosystem II	4.79E-04
19	GO:0009528: plastid inner membrane	6.32E-04
20	GO:0042651: thylakoid membrane	7.27E-04
21	GO:0009654: photosystem II oxygen evolving complex	7.27E-04
22	GO:0005960: glycine cleavage complex	9.04E-04
23	GO:0009527: plastid outer membrane	1.20E-03
24	GO:0009706: chloroplast inner membrane	1.33E-03
25	GO:0019898: extrinsic component of membrane	1.47E-03
26	GO:0055035: plastid thylakoid membrane	1.52E-03
27	GO:0010287: plastoglobule	1.65E-03
28	GO:0005623: cell	1.83E-03
29	GO:0009295: nucleoid	2.01E-03
30	GO:0009707: chloroplast outer membrane	2.94E-03
31	GO:0009501: amyloplast	3.06E-03
32	GO:0005840: ribosome	4.28E-03
33	GO:0009536: plastid	5.63E-03
34	GO:0032040: small-subunit processome	5.98E-03
35	GO:0009574: preprophase band	6.54E-03
36	GO:0030076: light-harvesting complex	7.69E-03
37	GO:0009532: plastid stroma	1.02E-02
38	GO:0015935: small ribosomal subunit	1.02E-02
39	GO:0009522: photosystem I	1.52E-02
40	GO:0015934: large ribosomal subunit	2.93E-02
41	GO:0016021: integral component of membrane	3.67E-02
42	GO:0005856: cytoskeleton	4.06E-02