Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G71480

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015678: high-affinity copper ion transport0.00E+00
2GO:1901918: negative regulation of exoribonuclease activity0.00E+00
3GO:0098586: cellular response to virus0.00E+00
4GO:0009715: chalcone biosynthetic process0.00E+00
5GO:0017009: protein-phycocyanobilin linkage0.00E+00
6GO:0009304: tRNA transcription0.00E+00
7GO:0042821: pyridoxal biosynthetic process0.00E+00
8GO:0015882: L-ascorbic acid transport0.00E+00
9GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
12GO:0018298: protein-chromophore linkage1.27E-06
13GO:0009658: chloroplast organization1.84E-06
14GO:0000256: allantoin catabolic process1.89E-06
15GO:0015979: photosynthesis5.87E-06
16GO:0090391: granum assembly6.94E-06
17GO:0010136: ureide catabolic process6.94E-06
18GO:0006145: purine nucleobase catabolic process1.60E-05
19GO:0055114: oxidation-reduction process2.41E-05
20GO:0009902: chloroplast relocation2.94E-05
21GO:0035434: copper ion transmembrane transport4.73E-05
22GO:0007623: circadian rhythm8.12E-05
23GO:0009644: response to high light intensity9.33E-05
24GO:0019761: glucosinolate biosynthetic process1.94E-04
25GO:0010362: negative regulation of anion channel activity by blue light2.00E-04
26GO:0009443: pyridoxal 5'-phosphate salvage2.00E-04
27GO:0031426: polycistronic mRNA processing2.00E-04
28GO:0033388: putrescine biosynthetic process from arginine2.00E-04
29GO:0033506: glucosinolate biosynthetic process from homomethionine2.00E-04
30GO:0051775: response to redox state2.00E-04
31GO:1904966: positive regulation of vitamin E biosynthetic process2.00E-04
32GO:0071277: cellular response to calcium ion2.00E-04
33GO:1904964: positive regulation of phytol biosynthetic process2.00E-04
34GO:0042371: vitamin K biosynthetic process2.00E-04
35GO:0010028: xanthophyll cycle2.00E-04
36GO:0009638: phototropism2.97E-04
37GO:0009098: leucine biosynthetic process2.97E-04
38GO:0015995: chlorophyll biosynthetic process3.65E-04
39GO:0042853: L-alanine catabolic process4.48E-04
40GO:0046741: transport of virus in host, tissue to tissue4.48E-04
41GO:0009915: phloem sucrose loading4.48E-04
42GO:1902326: positive regulation of chlorophyll biosynthetic process4.48E-04
43GO:2000030: regulation of response to red or far red light4.48E-04
44GO:0009629: response to gravity4.48E-04
45GO:0080005: photosystem stoichiometry adjustment4.48E-04
46GO:0042548: regulation of photosynthesis, light reaction4.48E-04
47GO:0019752: carboxylic acid metabolic process4.48E-04
48GO:0030187: melatonin biosynthetic process4.48E-04
49GO:0009446: putrescine biosynthetic process4.48E-04
50GO:0016122: xanthophyll metabolic process4.48E-04
51GO:0009405: pathogenesis7.29E-04
52GO:0005977: glycogen metabolic process7.29E-04
53GO:0009768: photosynthesis, light harvesting in photosystem I8.95E-04
54GO:0006825: copper ion transport8.95E-04
55GO:0046653: tetrahydrofolate metabolic process1.04E-03
56GO:0006107: oxaloacetate metabolic process1.04E-03
57GO:0010239: chloroplast mRNA processing1.04E-03
58GO:0051016: barbed-end actin filament capping1.04E-03
59GO:0042989: sequestering of actin monomers1.04E-03
60GO:0046739: transport of virus in multicellular host1.04E-03
61GO:0043572: plastid fission1.04E-03
62GO:0009067: aspartate family amino acid biosynthetic process1.04E-03
63GO:0071484: cellular response to light intensity1.04E-03
64GO:0015994: chlorophyll metabolic process1.38E-03
65GO:0006734: NADH metabolic process1.38E-03
66GO:0010021: amylopectin biosynthetic process1.38E-03
67GO:0006979: response to oxidative stress1.63E-03
68GO:0030041: actin filament polymerization1.76E-03
69GO:0006656: phosphatidylcholine biosynthetic process1.76E-03
70GO:0010117: photoprotection1.76E-03
71GO:0009791: post-embryonic development1.82E-03
72GO:0019252: starch biosynthetic process1.82E-03
73GO:0009643: photosynthetic acclimation2.17E-03
74GO:0071470: cellular response to osmotic stress2.60E-03
75GO:0010189: vitamin E biosynthetic process2.60E-03
76GO:0009088: threonine biosynthetic process2.60E-03
77GO:0009648: photoperiodism2.60E-03
78GO:0009409: response to cold2.92E-03
79GO:0010196: nonphotochemical quenching3.06E-03
80GO:0009645: response to low light intensity stimulus3.06E-03
81GO:0051510: regulation of unidimensional cell growth3.06E-03
82GO:0009642: response to light intensity3.55E-03
83GO:0030091: protein repair3.55E-03
84GO:0009704: de-etiolation3.55E-03
85GO:0031540: regulation of anthocyanin biosynthetic process3.55E-03
86GO:0006811: ion transport4.02E-03
87GO:0009657: plastid organization4.06E-03
88GO:0032544: plastid translation4.06E-03
89GO:0007568: aging4.21E-03
90GO:0098656: anion transmembrane transport4.60E-03
91GO:0009821: alkaloid biosynthetic process4.60E-03
92GO:0048507: meristem development4.60E-03
93GO:0090333: regulation of stomatal closure4.60E-03
94GO:0000373: Group II intron splicing4.60E-03
95GO:0009853: photorespiration4.61E-03
96GO:0009637: response to blue light4.61E-03
97GO:0009970: cellular response to sulfate starvation5.74E-03
98GO:0006995: cellular response to nitrogen starvation5.74E-03
99GO:0009641: shade avoidance5.74E-03
100GO:0006259: DNA metabolic process5.74E-03
101GO:0010114: response to red light5.94E-03
102GO:0009744: response to sucrose5.94E-03
103GO:0009735: response to cytokinin6.04E-03
104GO:0009773: photosynthetic electron transport in photosystem I6.34E-03
105GO:0006265: DNA topological change6.34E-03
106GO:0009089: lysine biosynthetic process via diaminopimelate6.34E-03
107GO:0018119: peptidyl-cysteine S-nitrosylation6.34E-03
108GO:0016485: protein processing6.34E-03
109GO:0009416: response to light stimulus6.92E-03
110GO:0005986: sucrose biosynthetic process7.61E-03
111GO:0006807: nitrogen compound metabolic process7.61E-03
112GO:0006108: malate metabolic process7.61E-03
113GO:0006006: glucose metabolic process7.61E-03
114GO:0009725: response to hormone7.61E-03
115GO:0009767: photosynthetic electron transport chain7.61E-03
116GO:0006364: rRNA processing8.01E-03
117GO:0009585: red, far-red light phototransduction8.01E-03
118GO:0080167: response to karrikin8.02E-03
119GO:0010020: chloroplast fission8.28E-03
120GO:0010207: photosystem II assembly8.28E-03
121GO:0019253: reductive pentose-phosphate cycle8.28E-03
122GO:0010223: secondary shoot formation8.28E-03
123GO:0009266: response to temperature stimulus8.28E-03
124GO:0010224: response to UV-B8.29E-03
125GO:0090351: seedling development8.97E-03
126GO:0006096: glycolytic process9.48E-03
127GO:0006071: glycerol metabolic process9.68E-03
128GO:0006833: water transport9.68E-03
129GO:0009863: salicylic acid mediated signaling pathway1.04E-02
130GO:0080147: root hair cell development1.04E-02
131GO:0007010: cytoskeleton organization1.04E-02
132GO:0051302: regulation of cell division1.12E-02
133GO:0007017: microtubule-based process1.12E-02
134GO:0006730: one-carbon metabolic process1.27E-02
135GO:0019748: secondary metabolic process1.27E-02
136GO:0009625: response to insect1.35E-02
137GO:0009306: protein secretion1.43E-02
138GO:0009058: biosynthetic process1.51E-02
139GO:0009845: seed germination1.55E-02
140GO:0034220: ion transmembrane transport1.60E-02
141GO:0010118: stomatal movement1.60E-02
142GO:0007059: chromosome segregation1.78E-02
143GO:0000302: response to reactive oxygen species1.97E-02
144GO:0010193: response to ozone1.97E-02
145GO:0016032: viral process2.06E-02
146GO:0010468: regulation of gene expression2.37E-02
147GO:0010027: thylakoid membrane organization2.55E-02
148GO:0008219: cell death3.09E-02
149GO:0009813: flavonoid biosynthetic process3.20E-02
150GO:0000160: phosphorelay signal transduction system3.20E-02
151GO:0045893: positive regulation of transcription, DNA-templated3.22E-02
152GO:0009407: toxin catabolic process3.31E-02
153GO:0010218: response to far red light3.31E-02
154GO:0048527: lateral root development3.42E-02
155GO:0055085: transmembrane transport3.65E-02
156GO:0034599: cellular response to oxidative stress3.77E-02
157GO:0006099: tricarboxylic acid cycle3.77E-02
158GO:0046686: response to cadmium ion3.84E-02
159GO:0046777: protein autophosphorylation4.06E-02
160GO:0006631: fatty acid metabolic process4.13E-02
161GO:0042542: response to hydrogen peroxide4.25E-02
162GO:0009926: auxin polar transport4.37E-02
163GO:0045454: cell redox homeostasis4.54E-02
164GO:0009636: response to toxic substance4.75E-02
RankGO TermAdjusted P value
1GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
2GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
5GO:0016210: naringenin-chalcone synthase activity0.00E+00
6GO:0009976: tocopherol cyclase activity0.00E+00
7GO:0008115: sarcosine oxidase activity0.00E+00
8GO:0004760: serine-pyruvate transaminase activity0.00E+00
9GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
12GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
15GO:0050281: serine-glyoxylate transaminase activity0.00E+00
16GO:0016168: chlorophyll binding2.05E-05
17GO:0008453: alanine-glyoxylate transaminase activity2.94E-05
18GO:0000293: ferric-chelate reductase activity6.98E-05
19GO:0019899: enzyme binding1.29E-04
20GO:0004451: isocitrate lyase activity2.00E-04
21GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.00E-04
22GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity2.00E-04
23GO:0080105: 6-methylthiopropyl glucosinolate S-oxygenase activity2.00E-04
24GO:0008746: NAD(P)+ transhydrogenase activity2.00E-04
25GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.00E-04
26GO:0035671: enone reductase activity2.00E-04
27GO:0005375: copper ion transmembrane transporter activity2.04E-04
28GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity4.48E-04
29GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity4.48E-04
30GO:0019156: isoamylase activity4.48E-04
31GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity4.48E-04
32GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.48E-04
33GO:0000234: phosphoethanolamine N-methyltransferase activity4.48E-04
34GO:0003862: 3-isopropylmalate dehydrogenase activity4.48E-04
35GO:0010277: chlorophyllide a oxygenase [overall] activity7.29E-04
36GO:0004373: glycogen (starch) synthase activity7.29E-04
37GO:0004848: ureidoglycolate hydrolase activity7.29E-04
38GO:0004148: dihydrolipoyl dehydrogenase activity7.29E-04
39GO:0003861: 3-isopropylmalate dehydratase activity7.29E-04
40GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity7.29E-04
41GO:0003955: NAD(P)H dehydrogenase (quinone) activity7.29E-04
42GO:0050307: sucrose-phosphate phosphatase activity7.29E-04
43GO:0004096: catalase activity7.29E-04
44GO:0070402: NADPH binding7.29E-04
45GO:0015089: high-affinity copper ion transmembrane transporter activity7.29E-04
46GO:0031409: pigment binding7.36E-04
47GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.04E-03
48GO:0004072: aspartate kinase activity1.04E-03
49GO:0048027: mRNA 5'-UTR binding1.04E-03
50GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.04E-03
51GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity1.04E-03
52GO:0004792: thiosulfate sulfurtransferase activity1.04E-03
53GO:0016851: magnesium chelatase activity1.04E-03
54GO:0009882: blue light photoreceptor activity1.04E-03
55GO:0022891: substrate-specific transmembrane transporter activity1.16E-03
56GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.38E-03
57GO:0009011: starch synthase activity1.38E-03
58GO:0043495: protein anchor1.38E-03
59GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.38E-03
60GO:0016836: hydro-lyase activity1.38E-03
61GO:0008080: N-acetyltransferase activity1.58E-03
62GO:0016853: isomerase activity1.70E-03
63GO:0003785: actin monomer binding1.76E-03
64GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen1.76E-03
65GO:0004556: alpha-amylase activity2.17E-03
66GO:0016615: malate dehydrogenase activity2.17E-03
67GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.60E-03
68GO:0030060: L-malate dehydrogenase activity2.60E-03
69GO:0016491: oxidoreductase activity2.77E-03
70GO:0004033: aldo-keto reductase (NADP) activity3.55E-03
71GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity4.06E-03
72GO:0008135: translation factor activity, RNA binding4.06E-03
73GO:0050897: cobalt ion binding4.21E-03
74GO:0008889: glycerophosphodiester phosphodiesterase activity4.60E-03
75GO:0016844: strictosidine synthase activity5.15E-03
76GO:0016887: ATPase activity5.63E-03
77GO:0005506: iron ion binding5.64E-03
78GO:0005089: Rho guanyl-nucleotide exchange factor activity6.34E-03
79GO:0001054: RNA polymerase I activity6.34E-03
80GO:0001056: RNA polymerase III activity6.96E-03
81GO:0005315: inorganic phosphate transmembrane transporter activity7.61E-03
82GO:0004089: carbonate dehydratase activity7.61E-03
83GO:0000155: phosphorelay sensor kinase activity7.61E-03
84GO:0003779: actin binding1.11E-02
85GO:0008514: organic anion transmembrane transporter activity1.43E-02
86GO:0004499: N,N-dimethylaniline monooxygenase activity1.43E-02
87GO:0003727: single-stranded RNA binding1.43E-02
88GO:0009055: electron carrier activity1.44E-02
89GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.47E-02
90GO:0010181: FMN binding1.78E-02
91GO:0004872: receptor activity1.87E-02
92GO:0048038: quinone binding1.97E-02
93GO:0016791: phosphatase activity2.25E-02
94GO:0008237: metallopeptidase activity2.35E-02
95GO:0016597: amino acid binding2.45E-02
96GO:0042802: identical protein binding2.52E-02
97GO:0015250: water channel activity2.55E-02
98GO:0004721: phosphoprotein phosphatase activity2.87E-02
99GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.98E-02
100GO:0000287: magnesium ion binding3.01E-02
101GO:0030145: manganese ion binding3.42E-02
102GO:0050660: flavin adenine dinucleotide binding3.55E-02
103GO:0003746: translation elongation factor activity3.65E-02
104GO:0004497: monooxygenase activity3.80E-02
105GO:0050661: NADP binding4.01E-02
106GO:0004364: glutathione transferase activity4.25E-02
107GO:0004185: serine-type carboxypeptidase activity4.37E-02
108GO:0043621: protein self-association4.62E-02
109GO:0051537: 2 iron, 2 sulfur cluster binding4.62E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.16E-32
2GO:0009535: chloroplast thylakoid membrane9.75E-16
3GO:0009570: chloroplast stroma2.15E-11
4GO:0009941: chloroplast envelope6.01E-09
5GO:0009534: chloroplast thylakoid1.95E-07
6GO:0009579: thylakoid2.01E-06
7GO:0010287: plastoglobule3.50E-05
8GO:0042651: thylakoid membrane5.32E-05
9GO:0009523: photosystem II1.60E-04
10GO:0009782: photosystem I antenna complex2.00E-04
11GO:0009515: granal stacked thylakoid2.00E-04
12GO:0010319: stromule2.51E-04
13GO:0009706: chloroplast inner membrane2.53E-04
14GO:0008290: F-actin capping protein complex4.48E-04
15GO:0045254: pyruvate dehydrogenase complex4.48E-04
16GO:0009569: chloroplast starch grain4.48E-04
17GO:0005777: peroxisome5.22E-04
18GO:0010007: magnesium chelatase complex7.29E-04
19GO:0033281: TAT protein transport complex7.29E-04
20GO:0009654: photosystem II oxygen evolving complex8.95E-04
21GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.38E-03
22GO:0030286: dynein complex1.38E-03
23GO:0009543: chloroplast thylakoid lumen2.33E-03
24GO:0009536: plastid2.40E-03
25GO:0009707: chloroplast outer membrane3.65E-03
26GO:0009514: glyoxysome4.06E-03
27GO:0009539: photosystem II reaction center4.06E-03
28GO:0005736: DNA-directed RNA polymerase I complex4.60E-03
29GO:0042644: chloroplast nucleoid4.60E-03
30GO:0005666: DNA-directed RNA polymerase III complex5.15E-03
31GO:0031977: thylakoid lumen5.48E-03
32GO:0048046: apoplast7.24E-03
33GO:0005938: cell cortex7.61E-03
34GO:0031969: chloroplast membrane8.02E-03
35GO:0030095: chloroplast photosystem II8.28E-03
36GO:0030076: light-harvesting complex8.97E-03
37GO:0009532: plastid stroma1.19E-02
38GO:0015629: actin cytoskeleton1.35E-02
39GO:0009522: photosystem I1.78E-02
40GO:0005759: mitochondrial matrix1.80E-02
41GO:0019898: extrinsic component of membrane1.87E-02
42GO:0009295: nucleoid2.35E-02
43GO:0005778: peroxisomal membrane2.35E-02
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Gene type



Gene DE type