GO Enrichment Analysis of Co-expressed Genes with
AT1G71340
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098586: cellular response to virus | 0.00E+00 |
| 2 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 3 | GO:0017009: protein-phycocyanobilin linkage | 0.00E+00 |
| 4 | GO:0009304: tRNA transcription | 0.00E+00 |
| 5 | GO:0009661: chromoplast organization | 0.00E+00 |
| 6 | GO:2001141: regulation of RNA biosynthetic process | 1.60E-05 |
| 7 | GO:0009658: chloroplast organization | 2.34E-05 |
| 8 | GO:0071483: cellular response to blue light | 2.94E-05 |
| 9 | GO:0010236: plastoquinone biosynthetic process | 4.73E-05 |
| 10 | GO:0010190: cytochrome b6f complex assembly | 6.98E-05 |
| 11 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 2.00E-04 |
| 12 | GO:0010362: negative regulation of anion channel activity by blue light | 2.00E-04 |
| 13 | GO:0031426: polycistronic mRNA processing | 2.00E-04 |
| 14 | GO:0015798: myo-inositol transport | 2.00E-04 |
| 15 | GO:0042371: vitamin K biosynthetic process | 2.00E-04 |
| 16 | GO:0071461: cellular response to redox state | 2.00E-04 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 3.65E-04 |
| 18 | GO:0006352: DNA-templated transcription, initiation | 4.04E-04 |
| 19 | GO:0018298: protein-chromophore linkage | 4.18E-04 |
| 20 | GO:0080185: effector dependent induction by symbiont of host immune response | 4.48E-04 |
| 21 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.48E-04 |
| 22 | GO:0046741: transport of virus in host, tissue to tissue | 4.48E-04 |
| 23 | GO:0006898: receptor-mediated endocytosis | 4.48E-04 |
| 24 | GO:0080005: photosystem stoichiometry adjustment | 4.48E-04 |
| 25 | GO:0007154: cell communication | 4.48E-04 |
| 26 | GO:0000256: allantoin catabolic process | 4.48E-04 |
| 27 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.48E-04 |
| 28 | GO:0009767: photosynthetic electron transport chain | 5.25E-04 |
| 29 | GO:0010207: photosystem II assembly | 5.92E-04 |
| 30 | GO:0010136: ureide catabolic process | 7.29E-04 |
| 31 | GO:0044375: regulation of peroxisome size | 7.29E-04 |
| 32 | GO:0008299: isoprenoid biosynthetic process | 8.95E-04 |
| 33 | GO:0010371: regulation of gibberellin biosynthetic process | 1.04E-03 |
| 34 | GO:0006166: purine ribonucleoside salvage | 1.04E-03 |
| 35 | GO:0071484: cellular response to light intensity | 1.04E-03 |
| 36 | GO:0010239: chloroplast mRNA processing | 1.04E-03 |
| 37 | GO:0006145: purine nucleobase catabolic process | 1.04E-03 |
| 38 | GO:0006168: adenine salvage | 1.04E-03 |
| 39 | GO:0050482: arachidonic acid secretion | 1.04E-03 |
| 40 | GO:0043572: plastid fission | 1.04E-03 |
| 41 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.04E-03 |
| 42 | GO:0071585: detoxification of cadmium ion | 1.38E-03 |
| 43 | GO:0009902: chloroplast relocation | 1.38E-03 |
| 44 | GO:0010021: amylopectin biosynthetic process | 1.38E-03 |
| 45 | GO:0044209: AMP salvage | 1.76E-03 |
| 46 | GO:0016120: carotene biosynthetic process | 1.76E-03 |
| 47 | GO:0010117: photoprotection | 1.76E-03 |
| 48 | GO:0009904: chloroplast accumulation movement | 1.76E-03 |
| 49 | GO:0035434: copper ion transmembrane transport | 1.76E-03 |
| 50 | GO:0015979: photosynthesis | 1.96E-03 |
| 51 | GO:0006555: methionine metabolic process | 2.17E-03 |
| 52 | GO:0055114: oxidation-reduction process | 2.39E-03 |
| 53 | GO:0071805: potassium ion transmembrane transport | 2.50E-03 |
| 54 | GO:0009648: photoperiodism | 2.60E-03 |
| 55 | GO:0019509: L-methionine salvage from methylthioadenosine | 2.60E-03 |
| 56 | GO:0009903: chloroplast avoidance movement | 2.60E-03 |
| 57 | GO:0010189: vitamin E biosynthetic process | 2.60E-03 |
| 58 | GO:0010019: chloroplast-nucleus signaling pathway | 2.60E-03 |
| 59 | GO:0010038: response to metal ion | 3.06E-03 |
| 60 | GO:0006102: isocitrate metabolic process | 3.55E-03 |
| 61 | GO:0016559: peroxisome fission | 3.55E-03 |
| 62 | GO:0006644: phospholipid metabolic process | 3.55E-03 |
| 63 | GO:0048564: photosystem I assembly | 3.55E-03 |
| 64 | GO:0050821: protein stabilization | 3.55E-03 |
| 65 | GO:0071482: cellular response to light stimulus | 4.06E-03 |
| 66 | GO:0010100: negative regulation of photomorphogenesis | 4.06E-03 |
| 67 | GO:0048507: meristem development | 4.60E-03 |
| 68 | GO:0009821: alkaloid biosynthetic process | 4.60E-03 |
| 69 | GO:0034765: regulation of ion transmembrane transport | 4.60E-03 |
| 70 | GO:0009637: response to blue light | 4.61E-03 |
| 71 | GO:1900426: positive regulation of defense response to bacterium | 5.15E-03 |
| 72 | GO:0009638: phototropism | 5.15E-03 |
| 73 | GO:0009098: leucine biosynthetic process | 5.15E-03 |
| 74 | GO:0009641: shade avoidance | 5.74E-03 |
| 75 | GO:0051555: flavonol biosynthetic process | 5.74E-03 |
| 76 | GO:0009970: cellular response to sulfate starvation | 5.74E-03 |
| 77 | GO:0006995: cellular response to nitrogen starvation | 5.74E-03 |
| 78 | GO:0009773: photosynthetic electron transport in photosystem I | 6.34E-03 |
| 79 | GO:0008285: negative regulation of cell proliferation | 6.34E-03 |
| 80 | GO:0043085: positive regulation of catalytic activity | 6.34E-03 |
| 81 | GO:0016485: protein processing | 6.34E-03 |
| 82 | GO:0009644: response to high light intensity | 6.43E-03 |
| 83 | GO:0009725: response to hormone | 7.61E-03 |
| 84 | GO:0005986: sucrose biosynthetic process | 7.61E-03 |
| 85 | GO:0010020: chloroplast fission | 8.28E-03 |
| 86 | GO:0007015: actin filament organization | 8.28E-03 |
| 87 | GO:0010223: secondary shoot formation | 8.28E-03 |
| 88 | GO:0007031: peroxisome organization | 8.97E-03 |
| 89 | GO:0042343: indole glucosinolate metabolic process | 8.97E-03 |
| 90 | GO:0045454: cell redox homeostasis | 1.01E-02 |
| 91 | GO:0051302: regulation of cell division | 1.12E-02 |
| 92 | GO:0010073: meristem maintenance | 1.12E-02 |
| 93 | GO:0006825: copper ion transport | 1.12E-02 |
| 94 | GO:0006810: transport | 1.13E-02 |
| 95 | GO:0009624: response to nematode | 1.14E-02 |
| 96 | GO:0098542: defense response to other organism | 1.19E-02 |
| 97 | GO:0031408: oxylipin biosynthetic process | 1.19E-02 |
| 98 | GO:0006366: transcription from RNA polymerase II promoter | 1.19E-02 |
| 99 | GO:0016998: cell wall macromolecule catabolic process | 1.19E-02 |
| 100 | GO:0016226: iron-sulfur cluster assembly | 1.27E-02 |
| 101 | GO:0010227: floral organ abscission | 1.35E-02 |
| 102 | GO:0006817: phosphate ion transport | 1.43E-02 |
| 103 | GO:0010118: stomatal movement | 1.60E-02 |
| 104 | GO:0006606: protein import into nucleus | 1.60E-02 |
| 105 | GO:0042335: cuticle development | 1.60E-02 |
| 106 | GO:0042391: regulation of membrane potential | 1.60E-02 |
| 107 | GO:0006662: glycerol ether metabolic process | 1.69E-02 |
| 108 | GO:0010182: sugar mediated signaling pathway | 1.69E-02 |
| 109 | GO:0009791: post-embryonic development | 1.87E-02 |
| 110 | GO:0019252: starch biosynthetic process | 1.87E-02 |
| 111 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.97E-02 |
| 112 | GO:0000302: response to reactive oxygen species | 1.97E-02 |
| 113 | GO:0007623: circadian rhythm | 1.98E-02 |
| 114 | GO:0019761: glucosinolate biosynthetic process | 2.06E-02 |
| 115 | GO:0030163: protein catabolic process | 2.16E-02 |
| 116 | GO:0016126: sterol biosynthetic process | 2.55E-02 |
| 117 | GO:0010411: xyloglucan metabolic process | 2.87E-02 |
| 118 | GO:0006950: response to stress | 2.87E-02 |
| 119 | GO:0008219: cell death | 3.09E-02 |
| 120 | GO:0000160: phosphorelay signal transduction system | 3.20E-02 |
| 121 | GO:0045893: positive regulation of transcription, DNA-templated | 3.22E-02 |
| 122 | GO:0006811: ion transport | 3.31E-02 |
| 123 | GO:0010218: response to far red light | 3.31E-02 |
| 124 | GO:0007568: aging | 3.42E-02 |
| 125 | GO:0010043: response to zinc ion | 3.42E-02 |
| 126 | GO:0006865: amino acid transport | 3.54E-02 |
| 127 | GO:0009853: photorespiration | 3.65E-02 |
| 128 | GO:0006099: tricarboxylic acid cycle | 3.77E-02 |
| 129 | GO:0034599: cellular response to oxidative stress | 3.77E-02 |
| 130 | GO:0006508: proteolysis | 3.93E-02 |
| 131 | GO:0044550: secondary metabolite biosynthetic process | 4.12E-02 |
| 132 | GO:0042542: response to hydrogen peroxide | 4.25E-02 |
| 133 | GO:0009744: response to sucrose | 4.37E-02 |
| 134 | GO:0009640: photomorphogenesis | 4.37E-02 |
| 135 | GO:0010114: response to red light | 4.37E-02 |
| 136 | GO:0042546: cell wall biogenesis | 4.50E-02 |
| 137 | GO:0009636: response to toxic substance | 4.75E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 2 | GO:0050342: tocopherol O-methyltransferase activity | 0.00E+00 |
| 3 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 4 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 5 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 6 | GO:0050347: trans-octaprenyltranstransferase activity | 1.89E-06 |
| 7 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 1.89E-06 |
| 8 | GO:0004180: carboxypeptidase activity | 6.94E-06 |
| 9 | GO:0016851: magnesium chelatase activity | 1.60E-05 |
| 10 | GO:0001053: plastid sigma factor activity | 2.94E-05 |
| 11 | GO:0016987: sigma factor activity | 2.94E-05 |
| 12 | GO:0048038: quinone binding | 1.77E-04 |
| 13 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.00E-04 |
| 14 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 2.00E-04 |
| 15 | GO:0035671: enone reductase activity | 2.00E-04 |
| 16 | GO:0046906: tetrapyrrole binding | 2.00E-04 |
| 17 | GO:0016783: sulfurtransferase activity | 2.00E-04 |
| 18 | GO:0004328: formamidase activity | 2.00E-04 |
| 19 | GO:0033201: alpha-1,4-glucan synthase activity | 4.48E-04 |
| 20 | GO:0015173: aromatic amino acid transmembrane transporter activity | 4.48E-04 |
| 21 | GO:0004046: aminoacylase activity | 4.48E-04 |
| 22 | GO:0003988: acetyl-CoA C-acyltransferase activity | 4.48E-04 |
| 23 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 4.48E-04 |
| 24 | GO:0005366: myo-inositol:proton symporter activity | 4.48E-04 |
| 25 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 4.48E-04 |
| 26 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 7.29E-04 |
| 27 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 7.29E-04 |
| 28 | GO:0004373: glycogen (starch) synthase activity | 7.29E-04 |
| 29 | GO:0003913: DNA photolyase activity | 7.29E-04 |
| 30 | GO:0032947: protein complex scaffold | 7.29E-04 |
| 31 | GO:0004848: ureidoglycolate hydrolase activity | 7.29E-04 |
| 32 | GO:0004148: dihydrolipoyl dehydrogenase activity | 7.29E-04 |
| 33 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 7.29E-04 |
| 34 | GO:0050307: sucrose-phosphate phosphatase activity | 7.29E-04 |
| 35 | GO:0004096: catalase activity | 7.29E-04 |
| 36 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.04E-03 |
| 37 | GO:0000254: C-4 methylsterol oxidase activity | 1.04E-03 |
| 38 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.04E-03 |
| 39 | GO:0048027: mRNA 5'-UTR binding | 1.04E-03 |
| 40 | GO:0003999: adenine phosphoribosyltransferase activity | 1.04E-03 |
| 41 | GO:0004792: thiosulfate sulfurtransferase activity | 1.04E-03 |
| 42 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.04E-03 |
| 43 | GO:0009882: blue light photoreceptor activity | 1.04E-03 |
| 44 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.13E-03 |
| 45 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.38E-03 |
| 46 | GO:0009011: starch synthase activity | 1.38E-03 |
| 47 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.38E-03 |
| 48 | GO:0010181: FMN binding | 1.70E-03 |
| 49 | GO:0004623: phospholipase A2 activity | 1.76E-03 |
| 50 | GO:0004709: MAP kinase kinase kinase activity | 2.17E-03 |
| 51 | GO:0000293: ferric-chelate reductase activity | 2.17E-03 |
| 52 | GO:0008237: metallopeptidase activity | 2.50E-03 |
| 53 | GO:0005242: inward rectifier potassium channel activity | 2.60E-03 |
| 54 | GO:0009881: photoreceptor activity | 3.06E-03 |
| 55 | GO:0019899: enzyme binding | 3.06E-03 |
| 56 | GO:0008236: serine-type peptidase activity | 3.47E-03 |
| 57 | GO:0005375: copper ion transmembrane transporter activity | 4.06E-03 |
| 58 | GO:0050897: cobalt ion binding | 4.21E-03 |
| 59 | GO:0000989: transcription factor activity, transcription factor binding | 4.60E-03 |
| 60 | GO:0042802: identical protein binding | 4.75E-03 |
| 61 | GO:0016844: strictosidine synthase activity | 5.15E-03 |
| 62 | GO:0016887: ATPase activity | 5.63E-03 |
| 63 | GO:0005506: iron ion binding | 5.64E-03 |
| 64 | GO:0000287: magnesium ion binding | 5.96E-03 |
| 65 | GO:0019904: protein domain specific binding | 6.34E-03 |
| 66 | GO:0001054: RNA polymerase I activity | 6.34E-03 |
| 67 | GO:0001056: RNA polymerase III activity | 6.96E-03 |
| 68 | GO:0051287: NAD binding | 7.20E-03 |
| 69 | GO:0000155: phosphorelay sensor kinase activity | 7.61E-03 |
| 70 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 7.61E-03 |
| 71 | GO:0005315: inorganic phosphate transmembrane transporter activity | 7.61E-03 |
| 72 | GO:0031072: heat shock protein binding | 7.61E-03 |
| 73 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 8.28E-03 |
| 74 | GO:0016491: oxidoreductase activity | 9.36E-03 |
| 75 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 9.79E-03 |
| 76 | GO:0051536: iron-sulfur cluster binding | 1.04E-02 |
| 77 | GO:0001046: core promoter sequence-specific DNA binding | 1.04E-02 |
| 78 | GO:0015079: potassium ion transmembrane transporter activity | 1.12E-02 |
| 79 | GO:0004176: ATP-dependent peptidase activity | 1.19E-02 |
| 80 | GO:0022891: substrate-specific transmembrane transporter activity | 1.35E-02 |
| 81 | GO:0047134: protein-disulfide reductase activity | 1.52E-02 |
| 82 | GO:0005249: voltage-gated potassium channel activity | 1.60E-02 |
| 83 | GO:0030551: cyclic nucleotide binding | 1.60E-02 |
| 84 | GO:0008080: N-acetyltransferase activity | 1.69E-02 |
| 85 | GO:0004791: thioredoxin-disulfide reductase activity | 1.78E-02 |
| 86 | GO:0004872: receptor activity | 1.87E-02 |
| 87 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.97E-02 |
| 88 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.16E-02 |
| 89 | GO:0016791: phosphatase activity | 2.25E-02 |
| 90 | GO:0008483: transaminase activity | 2.35E-02 |
| 91 | GO:0016168: chlorophyll binding | 2.66E-02 |
| 92 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.87E-02 |
| 93 | GO:0030247: polysaccharide binding | 2.87E-02 |
| 94 | GO:0004721: phosphoprotein phosphatase activity | 2.87E-02 |
| 95 | GO:0004222: metalloendopeptidase activity | 3.31E-02 |
| 96 | GO:0030145: manganese ion binding | 3.42E-02 |
| 97 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.42E-02 |
| 98 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.65E-02 |
| 99 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 3.89E-02 |
| 100 | GO:0004364: glutathione transferase activity | 4.25E-02 |
| 101 | GO:0051537: 2 iron, 2 sulfur cluster binding | 4.62E-02 |
| 102 | GO:0005198: structural molecule activity | 4.75E-02 |
| 103 | GO:0015293: symporter activity | 4.75E-02 |
| 104 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.49E-15 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 2.54E-09 |
| 3 | GO:0005777: peroxisome | 1.55E-05 |
| 4 | GO:0031972: chloroplast intermembrane space | 2.00E-04 |
| 5 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.49E-04 |
| 6 | GO:0045254: pyruvate dehydrogenase complex | 4.48E-04 |
| 7 | GO:0010007: magnesium chelatase complex | 7.29E-04 |
| 8 | GO:0009570: chloroplast stroma | 1.47E-03 |
| 9 | GO:0031969: chloroplast membrane | 1.60E-03 |
| 10 | GO:0009536: plastid | 2.40E-03 |
| 11 | GO:0010319: stromule | 2.50E-03 |
| 12 | GO:0009501: amyloplast | 3.55E-03 |
| 13 | GO:0031982: vesicle | 3.55E-03 |
| 14 | GO:0009707: chloroplast outer membrane | 3.65E-03 |
| 15 | GO:0009514: glyoxysome | 4.06E-03 |
| 16 | GO:0005779: integral component of peroxisomal membrane | 4.06E-03 |
| 17 | GO:0005736: DNA-directed RNA polymerase I complex | 4.60E-03 |
| 18 | GO:0042644: chloroplast nucleoid | 4.60E-03 |
| 19 | GO:0005666: DNA-directed RNA polymerase III complex | 5.15E-03 |
| 20 | GO:0005773: vacuole | 6.17E-03 |
| 21 | GO:0009534: chloroplast thylakoid | 9.22E-03 |
| 22 | GO:0005747: mitochondrial respiratory chain complex I | 9.79E-03 |
| 23 | GO:0042651: thylakoid membrane | 1.12E-02 |
| 24 | GO:0045271: respiratory chain complex I | 1.12E-02 |
| 25 | GO:0009706: chloroplast inner membrane | 1.14E-02 |
| 26 | GO:0009532: plastid stroma | 1.19E-02 |
| 27 | GO:0005759: mitochondrial matrix | 1.80E-02 |
| 28 | GO:0009523: photosystem II | 1.87E-02 |
| 29 | GO:0005778: peroxisomal membrane | 2.35E-02 |
| 30 | GO:0005739: mitochondrion | 3.42E-02 |
| 31 | GO:0031977: thylakoid lumen | 4.13E-02 |