co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G70280

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0033231: carbohydrate export	0.00E+00
3	GO:0090470: shoot organ boundary specification	0.00E+00
4	GO:0051246: regulation of protein metabolic process	0.00E+00
5	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
6	GO:0006907: pinocytosis	0.00E+00
7	GO:0080005: photosystem stoichiometry adjustment	2.86E-06
8	GO:0009767: photosynthetic electron transport chain	3.56E-05
9	GO:0016123: xanthophyll biosynthetic process	6.78E-05
10	GO:0010019: chloroplast-nucleus signaling pathway	1.37E-04
11	GO:0034970: histone H3-R2 methylation	2.48E-04
12	GO:1902334: fructose export from vacuole to cytoplasm	2.48E-04
13	GO:0010362: negative regulation of anion channel activity by blue light	2.48E-04
14	GO:0015755: fructose transport	2.48E-04
15	GO:0034972: histone H3-R26 methylation	2.48E-04
16	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.48E-04
17	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	2.48E-04
18	GO:1904966: positive regulation of vitamin E biosynthetic process	2.48E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	2.48E-04
20	GO:0034971: histone H3-R17 methylation	2.48E-04
21	GO:0042371: vitamin K biosynthetic process	2.48E-04
22	GO:0071454: cellular response to anoxia	2.48E-04
23	GO:0071461: cellular response to redox state	2.48E-04
24	GO:0009657: plastid organization	2.82E-04
25	GO:0009658: chloroplast organization	3.65E-04
26	GO:0009098: leucine biosynthetic process	4.05E-04
27	GO:0009638: phototropism	4.05E-04
28	GO:0045036: protein targeting to chloroplast	4.74E-04
29	GO:0015995: chlorophyll biosynthetic process	5.44E-04
30	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.49E-04
31	GO:0034755: iron ion transmembrane transport	5.49E-04
32	GO:0007154: cell communication	5.49E-04
33	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	5.49E-04
34	GO:0000256: allantoin catabolic process	5.49E-04
35	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	5.49E-04
36	GO:0080153: negative regulation of reductive pentose-phosphate cycle	5.49E-04
37	GO:0080185: effector dependent induction by symbiont of host immune response	5.49E-04
38	GO:0010024: phytochromobilin biosynthetic process	5.49E-04
39	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.49E-04
40	GO:0018298: protein-chromophore linkage	6.20E-04
41	GO:0015979: photosynthesis	6.82E-04
42	GO:0010207: photosystem II assembly	7.98E-04
43	GO:0006013: mannose metabolic process	8.92E-04
44	GO:0010136: ureide catabolic process	8.92E-04
45	GO:0006696: ergosterol biosynthetic process	8.92E-04
46	GO:0090307: mitotic spindle assembly	1.27E-03
47	GO:0006809: nitric oxide biosynthetic process	1.27E-03
48	GO:0006145: purine nucleobase catabolic process	1.27E-03
49	GO:0033014: tetrapyrrole biosynthetic process	1.27E-03
50	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.27E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.27E-03
52	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.27E-03
53	GO:0010371: regulation of gibberellin biosynthetic process	1.27E-03
54	GO:0046653: tetrahydrofolate metabolic process	1.27E-03
55	GO:0016226: iron-sulfur cluster assembly	1.44E-03
56	GO:0009765: photosynthesis, light harvesting	1.70E-03
57	GO:0031122: cytoplasmic microtubule organization	1.70E-03
58	GO:0009902: chloroplast relocation	1.70E-03
59	GO:0042274: ribosomal small subunit biogenesis	1.70E-03
60	GO:0070417: cellular response to cold	1.84E-03
61	GO:0016117: carotenoid biosynthetic process	1.84E-03
62	GO:0010197: polar nucleus fusion	2.15E-03
63	GO:0009616: virus induced gene silencing	2.17E-03
64	GO:0016120: carotene biosynthetic process	2.17E-03
65	GO:0035194: posttranscriptional gene silencing by RNA	2.67E-03
66	GO:0000741: karyogamy	2.67E-03
67	GO:0010190: cytochrome b6f complex assembly	2.67E-03
68	GO:0009643: photosynthetic acclimation	2.67E-03
69	GO:0055114: oxidation-reduction process	3.65E-03
70	GO:1900056: negative regulation of leaf senescence	3.79E-03
71	GO:0009772: photosynthetic electron transport in photosystem II	3.79E-03
72	GO:0016126: sterol biosynthetic process	3.81E-03
73	GO:0042255: ribosome assembly	4.39E-03
74	GO:0006353: DNA-templated transcription, termination	4.39E-03
75	GO:0007155: cell adhesion	4.39E-03
76	GO:0048564: photosystem I assembly	4.39E-03
77	GO:0032544: plastid translation	5.03E-03
78	GO:0071482: cellular response to light stimulus	5.03E-03
79	GO:0022900: electron transport chain	5.03E-03
80	GO:0007623: circadian rhythm	5.21E-03
81	GO:0010228: vegetative to reproductive phase transition of meristem	5.52E-03
82	GO:0009821: alkaloid biosynthetic process	5.70E-03
83	GO:0046916: cellular transition metal ion homeostasis	5.70E-03
84	GO:0006783: heme biosynthetic process	5.70E-03
85	GO:0000373: Group II intron splicing	5.70E-03
86	GO:0007568: aging	5.75E-03
87	GO:0006779: porphyrin-containing compound biosynthetic process	6.40E-03
88	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.40E-03
89	GO:0010380: regulation of chlorophyll biosynthetic process	6.40E-03
90	GO:1900426: positive regulation of defense response to bacterium	6.40E-03
91	GO:0051555: flavonol biosynthetic process	7.12E-03
92	GO:0006995: cellular response to nitrogen starvation	7.12E-03
93	GO:0006259: DNA metabolic process	7.12E-03
94	GO:0010192: mucilage biosynthetic process	7.12E-03
95	GO:0009773: photosynthetic electron transport in photosystem I	7.88E-03
96	GO:0008285: negative regulation of cell proliferation	7.88E-03
97	GO:0006265: DNA topological change	7.88E-03
98	GO:0043085: positive regulation of catalytic activity	7.88E-03
99	GO:0006879: cellular iron ion homeostasis	7.88E-03
100	GO:0006352: DNA-templated transcription, initiation	7.88E-03
101	GO:0009750: response to fructose	7.88E-03
102	GO:0009744: response to sucrose	8.13E-03
103	GO:0009725: response to hormone	9.47E-03
104	GO:0005986: sucrose biosynthetic process	9.47E-03
105	GO:0034605: cellular response to heat	1.03E-02
106	GO:0006541: glutamine metabolic process	1.03E-02
107	GO:0019253: reductive pentose-phosphate cycle	1.03E-02
108	GO:0009416: response to light stimulus	1.11E-02
109	GO:0042343: indole glucosinolate metabolic process	1.12E-02
110	GO:0009825: multidimensional cell growth	1.12E-02
111	GO:0080167: response to karrikin	1.20E-02
112	GO:0006071: glycerol metabolic process	1.21E-02
113	GO:0006289: nucleotide-excision repair	1.30E-02
114	GO:0007017: microtubule-based process	1.39E-02
115	GO:0010073: meristem maintenance	1.39E-02
116	GO:0051260: protein homooligomerization	1.49E-02
117	GO:0098542: defense response to other organism	1.49E-02
118	GO:0080092: regulation of pollen tube growth	1.59E-02
119	GO:0010227: floral organ abscission	1.69E-02
120	GO:0008033: tRNA processing	2.01E-02
121	GO:0010118: stomatal movement	2.01E-02
122	GO:0009958: positive gravitropism	2.12E-02
123	GO:0015986: ATP synthesis coupled proton transport	2.23E-02
124	GO:0007059: chromosome segregation	2.23E-02
125	GO:0009646: response to absence of light	2.23E-02
126	GO:0009791: post-embryonic development	2.34E-02
127	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.46E-02
128	GO:0010193: response to ozone	2.46E-02
129	GO:0010583: response to cyclopentenone	2.58E-02
130	GO:0019761: glucosinolate biosynthetic process	2.58E-02
131	GO:0032502: developmental process	2.58E-02
132	GO:0007264: small GTPase mediated signal transduction	2.58E-02
133	GO:0000910: cytokinesis	3.07E-02
134	GO:0010027: thylakoid membrane organization	3.19E-02
135	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.32E-02
136	GO:0009816: defense response to bacterium, incompatible interaction	3.32E-02
137	GO:0009735: response to cytokinin	3.58E-02
138	GO:0010411: xyloglucan metabolic process	3.59E-02
139	GO:0000160: phosphorelay signal transduction system	4.00E-02
140	GO:0006811: ion transport	4.14E-02
141	GO:0009793: embryo development ending in seed dormancy	4.14E-02
142	GO:0009910: negative regulation of flower development	4.28E-02
143	GO:0009637: response to blue light	4.56E-02
144	GO:0048366: leaf development	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
2	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
3	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
4	GO:0008115: sarcosine oxidase activity	0.00E+00
5	GO:0046905: phytoene synthase activity	0.00E+00
6	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
9	GO:1990534: thermospermine oxidase activity	0.00E+00
10	GO:0015284: fructose uniporter activity	0.00E+00
11	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
12	GO:0003862: 3-isopropylmalate dehydrogenase activity	2.86E-06
13	GO:0004848: ureidoglycolate hydrolase activity	1.03E-05
14	GO:0016851: magnesium chelatase activity	2.34E-05
15	GO:0019899: enzyme binding	1.80E-04
16	GO:0004325: ferrochelatase activity	2.48E-04
17	GO:0051996: squalene synthase activity	2.48E-04
18	GO:0016783: sulfurtransferase activity	2.48E-04
19	GO:0008242: omega peptidase activity	2.48E-04
20	GO:0030941: chloroplast targeting sequence binding	2.48E-04
21	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.48E-04
22	GO:0046906: tetrapyrrole binding	2.48E-04
23	GO:0048038: quinone binding	2.71E-04
24	GO:0035241: protein-arginine omega-N monomethyltransferase activity	5.49E-04
25	GO:0005353: fructose transmembrane transporter activity	5.49E-04
26	GO:0034722: gamma-glutamyl-peptidase activity	5.49E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.49E-04
28	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	5.49E-04
29	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	5.49E-04
30	GO:0004047: aminomethyltransferase activity	5.49E-04
31	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.98E-04
32	GO:0005506: iron ion binding	8.40E-04
33	GO:0010277: chlorophyllide a oxygenase [overall] activity	8.92E-04
34	GO:0032947: protein complex scaffold	8.92E-04
35	GO:0004148: dihydrolipoyl dehydrogenase activity	8.92E-04
36	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	8.92E-04
37	GO:0050307: sucrose-phosphate phosphatase activity	8.92E-04
38	GO:0008469: histone-arginine N-methyltransferase activity	8.92E-04
39	GO:0008430: selenium binding	8.92E-04
40	GO:0004180: carboxypeptidase activity	8.92E-04
41	GO:0051537: 2 iron, 2 sulfur cluster binding	1.26E-03
42	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.27E-03
43	GO:0000254: C-4 methylsterol oxidase activity	1.27E-03
44	GO:0004792: thiosulfate sulfurtransferase activity	1.27E-03
45	GO:0009882: blue light photoreceptor activity	1.27E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	1.57E-03
47	GO:0016987: sigma factor activity	1.70E-03
48	GO:0043015: gamma-tubulin binding	1.70E-03
49	GO:0043495: protein anchor	1.70E-03
50	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.70E-03
51	GO:0003727: single-stranded RNA binding	1.70E-03
52	GO:0001053: plastid sigma factor activity	1.70E-03
53	GO:0051861: glycolipid binding	1.70E-03
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.70E-03
55	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.14E-03
56	GO:0051011: microtubule minus-end binding	2.17E-03
57	GO:0000293: ferric-chelate reductase activity	2.67E-03
58	GO:0004518: nuclease activity	2.82E-03
59	GO:0015631: tubulin binding	3.21E-03
60	GO:0004559: alpha-mannosidase activity	3.21E-03
61	GO:0008237: metallopeptidase activity	3.40E-03
62	GO:0016168: chlorophyll binding	4.03E-03
63	GO:0030247: polysaccharide binding	4.49E-03
64	GO:0046914: transition metal ion binding	5.03E-03
65	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.03E-03
66	GO:0003724: RNA helicase activity	5.03E-03
67	GO:0008889: glycerophosphodiester phosphodiesterase activity	5.70E-03
68	GO:0050897: cobalt ion binding	5.75E-03
69	GO:0005381: iron ion transmembrane transporter activity	6.40E-03
70	GO:0016844: strictosidine synthase activity	6.40E-03
71	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.88E-03
72	GO:0000287: magnesium ion binding	8.87E-03
73	GO:0031072: heat shock protein binding	9.47E-03
74	GO:0000155: phosphorelay sensor kinase activity	9.47E-03
75	GO:0051287: NAD binding	9.85E-03
76	GO:0008131: primary amine oxidase activity	1.03E-02
77	GO:0051119: sugar transmembrane transporter activity	1.12E-02
78	GO:0003690: double-stranded DNA binding	1.14E-02
79	GO:0003887: DNA-directed DNA polymerase activity	1.21E-02
80	GO:0051536: iron-sulfur cluster binding	1.30E-02
81	GO:0004176: ATP-dependent peptidase activity	1.49E-02
82	GO:0016740: transferase activity	1.50E-02
83	GO:0016491: oxidoreductase activity	1.61E-02
84	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.69E-02
85	GO:0019843: rRNA binding	1.96E-02
86	GO:0003924: GTPase activity	1.96E-02
87	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.02E-02
88	GO:0008080: N-acetyltransferase activity	2.12E-02
89	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.12E-02
90	GO:0010181: FMN binding	2.23E-02
91	GO:0016853: isomerase activity	2.23E-02
92	GO:0004872: receptor activity	2.34E-02
93	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.46E-02
94	GO:0008483: transaminase activity	2.94E-02
95	GO:0005200: structural constituent of cytoskeleton	2.94E-02
96	GO:0008194: UDP-glycosyltransferase activity	3.03E-02
97	GO:0042802: identical protein binding	3.44E-02
98	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.59E-02
99	GO:0008236: serine-type peptidase activity	3.72E-02
100	GO:0004222: metalloendopeptidase activity	4.14E-02
101	GO:0016788: hydrolase activity, acting on ester bonds	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	8.38E-27
2	GO:0009535: chloroplast thylakoid membrane	2.58E-13
3	GO:0031969: chloroplast membrane	1.05E-05
4	GO:0042651: thylakoid membrane	8.50E-05
5	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.41E-04
6	GO:0009570: chloroplast stroma	5.37E-04
7	GO:0045254: pyruvate dehydrogenase complex	5.49E-04
8	GO:0008274: gamma-tubulin ring complex	5.49E-04
9	GO:0010007: magnesium chelatase complex	8.92E-04
10	GO:0009897: external side of plasma membrane	8.92E-04
11	GO:0009534: chloroplast thylakoid	1.08E-03
12	GO:0000923: equatorial microtubule organizing center	1.27E-03
13	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.70E-03
14	GO:0030286: dynein complex	1.70E-03
15	GO:0055035: plastid thylakoid membrane	2.17E-03
16	GO:0009523: photosystem II	2.47E-03
17	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.67E-03
18	GO:0009840: chloroplastic endopeptidase Clp complex	3.21E-03
19	GO:0010287: plastoglobule	3.23E-03
20	GO:0009295: nucleoid	3.40E-03
21	GO:0031359: integral component of chloroplast outer membrane	3.79E-03
22	GO:0009536: plastid	4.48E-03
23	GO:0009707: chloroplast outer membrane	4.97E-03
24	GO:0009539: photosystem II reaction center	5.03E-03
25	GO:0000922: spindle pole	5.70E-03
26	GO:0016324: apical plasma membrane	7.12E-03
27	GO:0046658: anchored component of plasma membrane	7.45E-03
28	GO:0009508: plastid chromosome	9.47E-03
29	GO:0009941: chloroplast envelope	9.74E-03
30	GO:0043234: protein complex	1.21E-02
31	GO:0005875: microtubule associated complex	1.21E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.39E-02
33	GO:0009579: thylakoid	1.46E-02
34	GO:0009505: plant-type cell wall	1.48E-02
35	GO:0005623: cell	2.02E-02
36	GO:0031225: anchored component of membrane	2.17E-02
37	GO:0005759: mitochondrial matrix	2.47E-02
38	GO:0010319: stromule	2.94E-02
39	GO:0005618: cell wall	4.19E-02