co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G70200

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0033231: carbohydrate export	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0051246: regulation of protein metabolic process	0.00E+00
7	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
8	GO:0019685: photosynthesis, dark reaction	0.00E+00
9	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
10	GO:0009658: chloroplast organization	8.73E-09
11	GO:0016123: xanthophyll biosynthetic process	3.96E-07
12	GO:0015995: chlorophyll biosynthetic process	1.23E-06
13	GO:0080005: photosystem stoichiometry adjustment	2.14E-06
14	GO:0033014: tetrapyrrole biosynthetic process	1.79E-05
15	GO:2001141: regulation of RNA biosynthetic process	1.79E-05
16	GO:0009767: photosynthetic electron transport chain	2.52E-05
17	GO:0016120: carotene biosynthetic process	5.28E-05
18	GO:0010190: cytochrome b6f complex assembly	7.77E-05
19	GO:0048564: photosystem I assembly	1.82E-04
20	GO:0010362: negative regulation of anion channel activity by blue light	2.13E-04
21	GO:0015755: fructose transport	2.13E-04
22	GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.13E-04
23	GO:0031426: polycistronic mRNA processing	2.13E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	2.13E-04
25	GO:1904964: positive regulation of phytol biosynthetic process	2.13E-04
26	GO:0042371: vitamin K biosynthetic process	2.13E-04
27	GO:0071454: cellular response to anoxia	2.13E-04
28	GO:0071461: cellular response to redox state	2.13E-04
29	GO:0006436: tryptophanyl-tRNA aminoacylation	2.13E-04
30	GO:1902334: fructose export from vacuole to cytoplasm	2.13E-04
31	GO:0009657: plastid organization	2.25E-04
32	GO:0071482: cellular response to light stimulus	2.25E-04
33	GO:0045036: protein targeting to chloroplast	3.82E-04
34	GO:0006352: DNA-templated transcription, initiation	4.43E-04
35	GO:0018298: protein-chromophore linkage	4.71E-04
36	GO:0046741: transport of virus in host, tissue to tissue	4.76E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.76E-04
38	GO:0034755: iron ion transmembrane transport	4.76E-04
39	GO:0048314: embryo sac morphogenesis	4.76E-04
40	GO:0050688: regulation of defense response to virus	4.76E-04
41	GO:0080183: response to photooxidative stress	4.76E-04
42	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.76E-04
43	GO:0080185: effector dependent induction by symbiont of host immune response	4.76E-04
44	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.76E-04
45	GO:0010207: photosystem II assembly	6.47E-04
46	GO:0055114: oxidation-reduction process	7.26E-04
47	GO:0006013: mannose metabolic process	7.74E-04
48	GO:0006696: ergosterol biosynthetic process	7.74E-04
49	GO:0009644: response to high light intensity	9.62E-04
50	GO:0090307: mitotic spindle assembly	1.10E-03
51	GO:0006809: nitric oxide biosynthetic process	1.10E-03
52	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.10E-03
53	GO:0050482: arachidonic acid secretion	1.10E-03
54	GO:0043572: plastid fission	1.10E-03
55	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.10E-03
56	GO:0071484: cellular response to light intensity	1.10E-03
57	GO:0010239: chloroplast mRNA processing	1.10E-03
58	GO:0016226: iron-sulfur cluster assembly	1.17E-03
59	GO:0031122: cytoplasmic microtubule organization	1.47E-03
60	GO:0009902: chloroplast relocation	1.47E-03
61	GO:0042274: ribosomal small subunit biogenesis	1.47E-03
62	GO:0009765: photosynthesis, light harvesting	1.47E-03
63	GO:0070417: cellular response to cold	1.49E-03
64	GO:0016117: carotenoid biosynthetic process	1.49E-03
65	GO:0008033: tRNA processing	1.61E-03
66	GO:0009616: virus induced gene silencing	1.87E-03
67	GO:0010117: photoprotection	1.87E-03
68	GO:0045038: protein import into chloroplast thylakoid membrane	1.87E-03
69	GO:0009791: post-embryonic development	1.99E-03
70	GO:0010193: response to ozone	2.13E-03
71	GO:0015979: photosynthesis	2.26E-03
72	GO:0009643: photosynthetic acclimation	2.31E-03
73	GO:0017148: negative regulation of translation	2.77E-03
74	GO:0010019: chloroplast-nucleus signaling pathway	2.77E-03
75	GO:0010050: vegetative phase change	3.26E-03
76	GO:0006401: RNA catabolic process	3.26E-03
77	GO:1900056: negative regulation of leaf senescence	3.26E-03
78	GO:0042255: ribosome assembly	3.78E-03
79	GO:0006402: mRNA catabolic process	3.78E-03
80	GO:0006353: DNA-templated transcription, termination	3.78E-03
81	GO:0009704: de-etiolation	3.78E-03
82	GO:0006644: phospholipid metabolic process	3.78E-03
83	GO:0007623: circadian rhythm	3.95E-03
84	GO:0048507: meristem development	4.90E-03
85	GO:0006783: heme biosynthetic process	4.90E-03
86	GO:0000373: Group II intron splicing	4.90E-03
87	GO:0009098: leucine biosynthetic process	5.50E-03
88	GO:0010380: regulation of chlorophyll biosynthetic process	5.50E-03
89	GO:0010267: production of ta-siRNAs involved in RNA interference	5.50E-03
90	GO:0031425: chloroplast RNA processing	5.50E-03
91	GO:1900426: positive regulation of defense response to bacterium	5.50E-03
92	GO:0009638: phototropism	5.50E-03
93	GO:0006779: porphyrin-containing compound biosynthetic process	5.50E-03
94	GO:0006782: protoporphyrinogen IX biosynthetic process	6.12E-03
95	GO:0006995: cellular response to nitrogen starvation	6.12E-03
96	GO:0006259: DNA metabolic process	6.12E-03
97	GO:0009744: response to sucrose	6.53E-03
98	GO:0009773: photosynthetic electron transport in photosystem I	6.77E-03
99	GO:0006265: DNA topological change	6.77E-03
100	GO:0043085: positive regulation of catalytic activity	6.77E-03
101	GO:0006879: cellular iron ion homeostasis	6.77E-03
102	GO:0009750: response to fructose	6.77E-03
103	GO:0009725: response to hormone	8.13E-03
104	GO:0005986: sucrose biosynthetic process	8.13E-03
105	GO:0034605: cellular response to heat	8.84E-03
106	GO:0010020: chloroplast fission	8.84E-03
107	GO:0019253: reductive pentose-phosphate cycle	8.84E-03
108	GO:0006417: regulation of translation	9.75E-03
109	GO:0010025: wax biosynthetic process	1.03E-02
110	GO:0006418: tRNA aminoacylation for protein translation	1.19E-02
111	GO:0007017: microtubule-based process	1.19E-02
112	GO:0051302: regulation of cell division	1.19E-02
113	GO:0051321: meiotic cell cycle	1.27E-02
114	GO:0051260: protein homooligomerization	1.27E-02
115	GO:0080092: regulation of pollen tube growth	1.36E-02
116	GO:0046686: response to cadmium ion	1.47E-02
117	GO:0009306: protein secretion	1.53E-02
118	GO:0010118: stomatal movement	1.72E-02
119	GO:0006606: protein import into nucleus	1.72E-02
120	GO:0006662: glycerol ether metabolic process	1.81E-02
121	GO:0007059: chromosome segregation	1.91E-02
122	GO:0009646: response to absence of light	1.91E-02
123	GO:0000302: response to reactive oxygen species	2.10E-02
124	GO:0016032: viral process	2.20E-02
125	GO:0019761: glucosinolate biosynthetic process	2.20E-02
126	GO:0032502: developmental process	2.20E-02
127	GO:0030163: protein catabolic process	2.31E-02
128	GO:0010286: heat acclimation	2.52E-02
129	GO:0010468: regulation of gene expression	2.60E-02
130	GO:0051607: defense response to virus	2.62E-02
131	GO:0009735: response to cytokinin	2.73E-02
132	GO:0010027: thylakoid membrane organization	2.73E-02
133	GO:0009816: defense response to bacterium, incompatible interaction	2.84E-02
134	GO:0009793: embryo development ending in seed dormancy	2.88E-02
135	GO:0009416: response to light stimulus	3.05E-02
136	GO:0048481: plant ovule development	3.30E-02
137	GO:0000160: phosphorelay signal transduction system	3.42E-02
138	GO:0006811: ion transport	3.54E-02
139	GO:0007568: aging	3.66E-02
140	GO:0009910: negative regulation of flower development	3.66E-02
141	GO:0000724: double-strand break repair via homologous recombination	3.78E-02
142	GO:0009637: response to blue light	3.91E-02
143	GO:0009853: photorespiration	3.91E-02
144	GO:0034599: cellular response to oxidative stress	4.03E-02
145	GO:0006810: transport	4.04E-02
146	GO:0006457: protein folding	4.19E-02
147	GO:0046777: protein autophosphorylation	4.45E-02
148	GO:0010114: response to red light	4.68E-02
149	GO:0045454: cell redox homeostasis	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
4	GO:0015284: fructose uniporter activity	0.00E+00
5	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0016851: magnesium chelatase activity	1.79E-05
8	GO:0016987: sigma factor activity	3.29E-05
9	GO:0001053: plastid sigma factor activity	3.29E-05
10	GO:0019899: enzyme binding	1.42E-04
11	GO:0048038: quinone binding	2.02E-04
12	GO:0004325: ferrochelatase activity	2.13E-04
13	GO:0051996: squalene synthase activity	2.13E-04
14	GO:0004830: tryptophan-tRNA ligase activity	2.13E-04
15	GO:0030941: chloroplast targeting sequence binding	2.13E-04
16	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.13E-04
17	GO:0035671: enone reductase activity	2.13E-04
18	GO:0046906: tetrapyrrole binding	2.13E-04
19	GO:0004109: coproporphyrinogen oxidase activity	4.76E-04
20	GO:0005353: fructose transmembrane transporter activity	4.76E-04
21	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.76E-04
22	GO:0003862: 3-isopropylmalate dehydrogenase activity	4.76E-04
23	GO:0004047: aminomethyltransferase activity	4.76E-04
24	GO:0032947: protein complex scaffold	7.74E-04
25	GO:0004848: ureidoglycolate hydrolase activity	7.74E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	7.74E-04
27	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.74E-04
28	GO:0050307: sucrose-phosphate phosphatase activity	7.74E-04
29	GO:0004180: carboxypeptidase activity	7.74E-04
30	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.74E-04
31	GO:0048027: mRNA 5'-UTR binding	1.10E-03
32	GO:0009882: blue light photoreceptor activity	1.10E-03
33	GO:0043023: ribosomal large subunit binding	1.10E-03
34	GO:0022891: substrate-specific transmembrane transporter activity	1.27E-03
35	GO:0003727: single-stranded RNA binding	1.38E-03
36	GO:0043015: gamma-tubulin binding	1.47E-03
37	GO:0043495: protein anchor	1.47E-03
38	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.47E-03
39	GO:0051861: glycolipid binding	1.47E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.47E-03
41	GO:0008080: N-acetyltransferase activity	1.73E-03
42	GO:0051011: microtubule minus-end binding	1.87E-03
43	GO:0004623: phospholipase A2 activity	1.87E-03
44	GO:0000293: ferric-chelate reductase activity	2.31E-03
45	GO:0015631: tubulin binding	2.77E-03
46	GO:0004559: alpha-mannosidase activity	2.77E-03
47	GO:0016168: chlorophyll binding	3.25E-03
48	GO:0016491: oxidoreductase activity	3.34E-03
49	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.33E-03
50	GO:0071949: FAD binding	4.90E-03
51	GO:0042802: identical protein binding	5.35E-03
52	GO:0005381: iron ion transmembrane transporter activity	5.50E-03
53	GO:0005506: iron ion binding	6.65E-03
54	GO:0005089: Rho guanyl-nucleotide exchange factor activity	6.77E-03
55	GO:0051537: 2 iron, 2 sulfur cluster binding	7.06E-03
56	GO:0000175: 3'-5'-exoribonuclease activity	8.13E-03
57	GO:0031072: heat shock protein binding	8.13E-03
58	GO:0000155: phosphorelay sensor kinase activity	8.13E-03
59	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.80E-03
60	GO:0051119: sugar transmembrane transporter activity	9.58E-03
61	GO:0003887: DNA-directed DNA polymerase activity	1.03E-02
62	GO:0051536: iron-sulfur cluster binding	1.11E-02
63	GO:0051082: unfolded protein binding	1.26E-02
64	GO:0004176: ATP-dependent peptidase activity	1.27E-02
65	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.62E-02
66	GO:0009055: electron carrier activity	1.62E-02
67	GO:0047134: protein-disulfide reductase activity	1.62E-02
68	GO:0004812: aminoacyl-tRNA ligase activity	1.62E-02
69	GO:0008565: protein transporter activity	1.89E-02
70	GO:0010181: FMN binding	1.91E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	1.91E-02
72	GO:0004872: receptor activity	2.00E-02
73	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.31E-02
74	GO:0008483: transaminase activity	2.52E-02
75	GO:0008237: metallopeptidase activity	2.52E-02
76	GO:0005200: structural constituent of cytoskeleton	2.52E-02
77	GO:0008236: serine-type peptidase activity	3.18E-02
78	GO:0000287: magnesium ion binding	3.31E-02
79	GO:0004222: metalloendopeptidase activity	3.54E-02
80	GO:0050897: cobalt ion binding	3.66E-02
81	GO:0008233: peptidase activity	4.10E-02
82	GO:0003723: RNA binding	4.29E-02
83	GO:0043621: protein self-association	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.64E-35
2	GO:0009535: chloroplast thylakoid membrane	2.98E-21
3	GO:0009570: chloroplast stroma	4.05E-10
4	GO:0009941: chloroplast envelope	8.57E-08
5	GO:0031969: chloroplast membrane	5.17E-06
6	GO:0042651: thylakoid membrane	6.13E-05
7	GO:0009536: plastid	2.22E-04
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.74E-04
9	GO:0009707: chloroplast outer membrane	4.71E-04
10	GO:0080085: signal recognition particle, chloroplast targeting	4.76E-04
11	GO:0008274: gamma-tubulin ring complex	4.76E-04
12	GO:0010007: magnesium chelatase complex	7.74E-04
13	GO:0033281: TAT protein transport complex	7.74E-04
14	GO:0000923: equatorial microtubule organizing center	1.10E-03
15	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.47E-03
16	GO:0030286: dynein complex	1.47E-03
17	GO:0055035: plastid thylakoid membrane	1.87E-03
18	GO:0009706: chloroplast inner membrane	1.97E-03
19	GO:0009523: photosystem II	1.99E-03
20	GO:0005623: cell	2.71E-03
21	GO:0009579: thylakoid	2.72E-03
22	GO:0009295: nucleoid	2.74E-03
23	GO:0009534: chloroplast thylakoid	2.77E-03
24	GO:0005655: nucleolar ribonuclease P complex	2.77E-03
25	GO:0031359: integral component of chloroplast outer membrane	3.26E-03
26	GO:0009539: photosystem II reaction center	4.33E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.33E-03
28	GO:0042644: chloroplast nucleoid	4.90E-03
29	GO:0000922: spindle pole	4.90E-03
30	GO:0031977: thylakoid lumen	6.02E-03
31	GO:0016324: apical plasma membrane	6.12E-03
32	GO:0048471: perinuclear region of cytoplasm	6.77E-03
33	GO:0009508: plastid chromosome	8.13E-03
34	GO:0031966: mitochondrial membrane	8.20E-03
35	GO:0030095: chloroplast photosystem II	8.84E-03
36	GO:0043234: protein complex	1.03E-02
37	GO:0005875: microtubule associated complex	1.03E-02
38	GO:0005747: mitochondrial respiratory chain complex I	1.08E-02
39	GO:0009654: photosystem II oxygen evolving complex	1.19E-02
40	GO:0045271: respiratory chain complex I	1.19E-02
41	GO:0009532: plastid stroma	1.27E-02
42	GO:0005739: mitochondrion	1.29E-02
43	GO:0010287: plastoglobule	1.49E-02
44	GO:0009543: chloroplast thylakoid lumen	1.58E-02
45	GO:0005622: intracellular	1.90E-02
46	GO:0005778: peroxisomal membrane	2.52E-02
47	GO:0010319: stromule	2.52E-02