co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G69040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0090706: specification of plant organ position	0.00E+00
6	GO:0015671: oxygen transport	7.90E-05
7	GO:0010480: microsporocyte differentiation	7.90E-05
8	GO:0010028: xanthophyll cycle	7.90E-05
9	GO:0010450: inflorescence meristem growth	7.90E-05
10	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	7.90E-05
11	GO:0005980: glycogen catabolic process	7.90E-05
12	GO:0016122: xanthophyll metabolic process	1.89E-04
13	GO:0009944: polarity specification of adaxial/abaxial axis	2.34E-04
14	GO:0045165: cell fate commitment	3.17E-04
15	GO:0048281: inflorescence morphogenesis	3.17E-04
16	GO:0009405: pathogenesis	3.17E-04
17	GO:0010306: rhamnogalacturonan II biosynthetic process	4.58E-04
18	GO:1901332: negative regulation of lateral root development	4.58E-04
19	GO:0010148: transpiration	4.58E-04
20	GO:0006109: regulation of carbohydrate metabolic process	6.09E-04
21	GO:0015994: chlorophyll metabolic process	6.09E-04
22	GO:0045490: pectin catabolic process	7.13E-04
23	GO:1902183: regulation of shoot apical meristem development	7.72E-04
24	GO:0010158: abaxial cell fate specification	7.72E-04
25	GO:0010190: cytochrome b6f complex assembly	9.42E-04
26	GO:0003006: developmental process involved in reproduction	9.42E-04
27	GO:0070370: cellular heat acclimation	1.31E-03
28	GO:0010103: stomatal complex morphogenesis	1.31E-03
29	GO:0048437: floral organ development	1.31E-03
30	GO:0006353: DNA-templated transcription, termination	1.51E-03
31	GO:0006631: fatty acid metabolic process	1.57E-03
32	GO:0001558: regulation of cell growth	1.72E-03
33	GO:0032544: plastid translation	1.72E-03
34	GO:0010093: specification of floral organ identity	1.72E-03
35	GO:2000024: regulation of leaf development	1.95E-03
36	GO:0019432: triglyceride biosynthetic process	1.95E-03
37	GO:0048507: meristem development	1.95E-03
38	GO:0048829: root cap development	2.41E-03
39	GO:0019684: photosynthesis, light reaction	2.66E-03
40	GO:0009089: lysine biosynthetic process via diaminopimelate	2.66E-03
41	GO:0043085: positive regulation of catalytic activity	2.66E-03
42	GO:0048229: gametophyte development	2.66E-03
43	GO:0009684: indoleacetic acid biosynthetic process	2.66E-03
44	GO:0010015: root morphogenesis	2.66E-03
45	GO:0009773: photosynthetic electron transport in photosystem I	2.66E-03
46	GO:0071365: cellular response to auxin stimulus	2.92E-03
47	GO:0010582: floral meristem determinacy	2.92E-03
48	GO:0010075: regulation of meristem growth	3.18E-03
49	GO:0010102: lateral root morphogenesis	3.18E-03
50	GO:0009266: response to temperature stimulus	3.45E-03
51	GO:0009934: regulation of meristem structural organization	3.45E-03
52	GO:0048467: gynoecium development	3.45E-03
53	GO:0009933: meristem structural organization	3.45E-03
54	GO:0010030: positive regulation of seed germination	3.73E-03
55	GO:0009734: auxin-activated signaling pathway	4.02E-03
56	GO:0051302: regulation of cell division	4.61E-03
57	GO:0007017: microtubule-based process	4.61E-03
58	GO:0009735: response to cytokinin	4.81E-03
59	GO:0003333: amino acid transmembrane transport	4.92E-03
60	GO:0061077: chaperone-mediated protein folding	4.92E-03
61	GO:0019748: secondary metabolic process	5.24E-03
62	GO:0001944: vasculature development	5.56E-03
63	GO:0009686: gibberellin biosynthetic process	5.56E-03
64	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	6.22E-03
65	GO:0048653: anther development	6.57E-03
66	GO:0042631: cellular response to water deprivation	6.57E-03
67	GO:0006662: glycerol ether metabolic process	6.92E-03
68	GO:0048868: pollen tube development	6.92E-03
69	GO:0010154: fruit development	6.92E-03
70	GO:0010583: response to cyclopentenone	8.39E-03
71	GO:0032502: developmental process	8.39E-03
72	GO:0042254: ribosome biogenesis	8.71E-03
73	GO:1901657: glycosyl compound metabolic process	8.77E-03
74	GO:0080167: response to karrikin	1.06E-02
75	GO:0009607: response to biotic stimulus	1.08E-02
76	GO:0006412: translation	1.09E-02
77	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.10E-02
78	GO:0009627: systemic acquired resistance	1.12E-02
79	GO:0015995: chlorophyll biosynthetic process	1.16E-02
80	GO:0016311: dephosphorylation	1.21E-02
81	GO:0009817: defense response to fungus, incompatible interaction	1.25E-02
82	GO:0009414: response to water deprivation	1.28E-02
83	GO:0006499: N-terminal protein myristoylation	1.34E-02
84	GO:0010218: response to far red light	1.34E-02
85	GO:0009631: cold acclimation	1.38E-02
86	GO:0006865: amino acid transport	1.43E-02
87	GO:0030154: cell differentiation	1.47E-02
88	GO:0032259: methylation	1.50E-02
89	GO:0034599: cellular response to oxidative stress	1.52E-02
90	GO:0009733: response to auxin	1.53E-02
91	GO:0010114: response to red light	1.77E-02
92	GO:0009965: leaf morphogenesis	1.92E-02
93	GO:0009409: response to cold	1.94E-02
94	GO:0009664: plant-type cell wall organization	2.08E-02
95	GO:0051603: proteolysis involved in cellular protein catabolic process	2.24E-02
96	GO:0009909: regulation of flower development	2.35E-02
97	GO:0043086: negative regulation of catalytic activity	2.46E-02
98	GO:0009740: gibberellic acid mediated signaling pathway	2.69E-02
99	GO:0009790: embryo development	3.68E-02

Rank	GO Term	Adjusted P value
1	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
2	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
5	GO:0030570: pectate lyase activity	1.08E-05
6	GO:0004645: phosphorylase activity	7.90E-05
7	GO:0005344: oxygen transporter activity	7.90E-05
8	GO:0008184: glycogen phosphorylase activity	7.90E-05
9	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	7.90E-05
10	GO:0018708: thiol S-methyltransferase activity	1.89E-04
11	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.89E-04
12	GO:0016868: intramolecular transferase activity, phosphotransferases	1.89E-04
13	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.89E-04
14	GO:0090729: toxin activity	3.17E-04
15	GO:0043023: ribosomal large subunit binding	4.58E-04
16	GO:0016851: magnesium chelatase activity	4.58E-04
17	GO:0019843: rRNA binding	4.76E-04
18	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	6.09E-04
19	GO:0042277: peptide binding	6.09E-04
20	GO:0010328: auxin influx transmembrane transporter activity	6.09E-04
21	GO:0019199: transmembrane receptor protein kinase activity	6.09E-04
22	GO:0004040: amidase activity	7.72E-04
23	GO:0004185: serine-type carboxypeptidase activity	1.70E-03
24	GO:0008047: enzyme activator activity	2.41E-03
25	GO:0044183: protein binding involved in protein folding	2.66E-03
26	GO:0047372: acylglycerol lipase activity	2.66E-03
27	GO:0004190: aspartic-type endopeptidase activity	3.73E-03
28	GO:0004857: enzyme inhibitor activity	4.31E-03
29	GO:0005528: FK506 binding	4.31E-03
30	GO:0016829: lyase activity	4.34E-03
31	GO:0033612: receptor serine/threonine kinase binding	4.92E-03
32	GO:0047134: protein-disulfide reductase activity	6.22E-03
33	GO:0001085: RNA polymerase II transcription factor binding	6.92E-03
34	GO:0004791: thioredoxin-disulfide reductase activity	7.28E-03
35	GO:0003735: structural constituent of ribosome	8.20E-03
36	GO:0008168: methyltransferase activity	8.23E-03
37	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	8.77E-03
38	GO:0005200: structural constituent of cytoskeleton	9.56E-03
39	GO:0102483: scopolin beta-glucosidase activity	1.16E-02
40	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.38E-02
41	GO:0003993: acid phosphatase activity	1.52E-02
42	GO:0008422: beta-glucosidase activity	1.57E-02
43	GO:0051537: 2 iron, 2 sulfur cluster binding	1.87E-02
44	GO:0043621: protein self-association	1.87E-02
45	GO:0015293: symporter activity	1.92E-02
46	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.97E-02
47	GO:0015171: amino acid transmembrane transporter activity	2.35E-02
48	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.52E-02
49	GO:0015035: protein disulfide oxidoreductase activity	2.87E-02
50	GO:0043565: sequence-specific DNA binding	3.36E-02
51	GO:0030170: pyridoxal phosphate binding	3.55E-02
52	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	4.08E-07
2	GO:0009507: chloroplast	8.74E-06
3	GO:0010007: magnesium chelatase complex	3.17E-04
4	GO:0009543: chloroplast thylakoid lumen	4.76E-04
5	GO:0030660: Golgi-associated vesicle membrane	6.09E-04
6	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	6.09E-04
7	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.51E-03
8	GO:0031977: thylakoid lumen	1.57E-03
9	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.95E-03
10	GO:0045298: tubulin complex	1.95E-03
11	GO:0009535: chloroplast thylakoid membrane	2.50E-03
12	GO:0005765: lysosomal membrane	2.66E-03
13	GO:0005840: ribosome	3.10E-03
14	GO:0030095: chloroplast photosystem II	3.45E-03
15	GO:0009579: thylakoid	6.76E-03
16	GO:0009534: chloroplast thylakoid	6.85E-03
17	GO:0010319: stromule	9.56E-03
18	GO:0009295: nucleoid	9.56E-03
19	GO:0005667: transcription factor complex	1.12E-02
20	GO:0015934: large ribosomal subunit	1.38E-02
21	GO:0009536: plastid	1.71E-02
22	GO:0010008: endosome membrane	2.52E-02
23	GO:0009941: chloroplast envelope	2.97E-02