co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G68590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0015822: ornithine transport	0.00E+00
3	GO:0015871: choline transport	0.00E+00
4	GO:0009106: lipoate metabolic process	0.00E+00
5	GO:0097164: ammonium ion metabolic process	0.00E+00
6	GO:0036172: thiamine salvage	0.00E+00
7	GO:0032928: regulation of superoxide anion generation	0.00E+00
8	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
9	GO:0048564: photosystem I assembly	6.58E-05
10	GO:0022900: electron transport chain	8.31E-05
11	GO:0034970: histone H3-R2 methylation	1.10E-04
12	GO:0034972: histone H3-R26 methylation	1.10E-04
13	GO:0034971: histone H3-R17 methylation	1.10E-04
14	GO:0071454: cellular response to anoxia	1.10E-04
15	GO:0000066: mitochondrial ornithine transport	1.10E-04
16	GO:0060359: response to ammonium ion	2.57E-04
17	GO:0090603: sieve element differentiation	2.57E-04
18	GO:2000071: regulation of defense response by callose deposition	2.57E-04
19	GO:0070981: L-asparagine biosynthetic process	2.57E-04
20	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.57E-04
21	GO:0006529: asparagine biosynthetic process	2.57E-04
22	GO:0016122: xanthophyll metabolic process	2.57E-04
23	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.57E-04
24	GO:0080153: negative regulation of reductive pentose-phosphate cycle	2.57E-04
25	GO:0010207: photosystem II assembly	2.61E-04
26	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.25E-04
27	GO:0009663: plasmodesma organization	4.25E-04
28	GO:0009150: purine ribonucleotide metabolic process	4.25E-04
29	GO:0071492: cellular response to UV-A	4.25E-04
30	GO:0006696: ergosterol biosynthetic process	4.25E-04
31	GO:0043157: response to cation stress	4.25E-04
32	GO:0009963: positive regulation of flavonoid biosynthetic process	6.10E-04
33	GO:0010088: phloem development	6.10E-04
34	GO:0009647: skotomorphogenesis	6.10E-04
35	GO:0033014: tetrapyrrole biosynthetic process	6.10E-04
36	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	6.10E-04
37	GO:0071486: cellular response to high light intensity	8.10E-04
38	GO:0009765: photosynthesis, light harvesting	8.10E-04
39	GO:0009649: entrainment of circadian clock	8.10E-04
40	GO:0000956: nuclear-transcribed mRNA catabolic process	8.10E-04
41	GO:0034613: cellular protein localization	8.10E-04
42	GO:0010117: photoprotection	1.02E-03
43	GO:0046283: anthocyanin-containing compound metabolic process	1.02E-03
44	GO:0009229: thiamine diphosphate biosynthetic process	1.02E-03
45	GO:0009107: lipoate biosynthetic process	1.02E-03
46	GO:0009959: negative gravitropism	1.25E-03
47	GO:0031053: primary miRNA processing	1.25E-03
48	GO:0009228: thiamine biosynthetic process	1.25E-03
49	GO:0006796: phosphate-containing compound metabolic process	1.25E-03
50	GO:0042793: transcription from plastid promoter	1.25E-03
51	GO:0010190: cytochrome b6f complex assembly	1.25E-03
52	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.25E-03
53	GO:0016070: RNA metabolic process	1.25E-03
54	GO:0010019: chloroplast-nucleus signaling pathway	1.49E-03
55	GO:0045292: mRNA cis splicing, via spliceosome	2.03E-03
56	GO:0010928: regulation of auxin mediated signaling pathway	2.03E-03
57	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.03E-03
58	GO:0009704: de-etiolation	2.03E-03
59	GO:0009231: riboflavin biosynthetic process	2.03E-03
60	GO:0009658: chloroplast organization	2.13E-03
61	GO:0019430: removal of superoxide radicals	2.32E-03
62	GO:0046916: cellular transition metal ion homeostasis	2.62E-03
63	GO:0006783: heme biosynthetic process	2.62E-03
64	GO:0006779: porphyrin-containing compound biosynthetic process	2.93E-03
65	GO:1900865: chloroplast RNA modification	2.93E-03
66	GO:0009688: abscisic acid biosynthetic process	3.25E-03
67	GO:0009641: shade avoidance	3.25E-03
68	GO:0009682: induced systemic resistance	3.59E-03
69	GO:0043085: positive regulation of catalytic activity	3.59E-03
70	GO:0006790: sulfur compound metabolic process	3.93E-03
71	GO:0006094: gluconeogenesis	4.30E-03
72	GO:0034605: cellular response to heat	4.66E-03
73	GO:0006541: glutamine metabolic process	4.66E-03
74	GO:0019253: reductive pentose-phosphate cycle	4.66E-03
75	GO:0000398: mRNA splicing, via spliceosome	5.74E-03
76	GO:0007017: microtubule-based process	6.25E-03
77	GO:0019915: lipid storage	6.67E-03
78	GO:0016226: iron-sulfur cluster assembly	7.11E-03
79	GO:2000022: regulation of jasmonic acid mediated signaling pathway	7.11E-03
80	GO:0016117: carotenoid biosynthetic process	8.46E-03
81	GO:0070417: cellular response to cold	8.46E-03
82	GO:0010051: xylem and phloem pattern formation	8.93E-03
83	GO:0010118: stomatal movement	8.93E-03
84	GO:0009958: positive gravitropism	9.41E-03
85	GO:0009646: response to absence of light	9.91E-03
86	GO:0002229: defense response to oomycetes	1.09E-02
87	GO:0007264: small GTPase mediated signal transduction	1.14E-02
88	GO:0009630: gravitropism	1.14E-02
89	GO:0030163: protein catabolic process	1.20E-02
90	GO:0016126: sterol biosynthetic process	1.42E-02
91	GO:0010027: thylakoid membrane organization	1.42E-02
92	GO:0015995: chlorophyll biosynthetic process	1.59E-02
93	GO:0048573: photoperiodism, flowering	1.59E-02
94	GO:0010119: regulation of stomatal movement	1.89E-02
95	GO:0009867: jasmonic acid mediated signaling pathway	2.02E-02
96	GO:0006099: tricarboxylic acid cycle	2.09E-02
97	GO:0006839: mitochondrial transport	2.22E-02
98	GO:0030001: metal ion transport	2.22E-02
99	GO:0042742: defense response to bacterium	2.31E-02
100	GO:0009640: photomorphogenesis	2.42E-02
101	GO:0009744: response to sucrose	2.42E-02
102	GO:0031347: regulation of defense response	2.77E-02
103	GO:0042538: hyperosmotic salinity response	2.85E-02
104	GO:0009585: red, far-red light phototransduction	2.99E-02
105	GO:0006508: proteolysis	3.06E-02
106	GO:0051603: proteolysis involved in cellular protein catabolic process	3.07E-02
107	GO:0010224: response to UV-B	3.07E-02
108	GO:0006417: regulation of translation	3.22E-02
109	GO:0009909: regulation of flower development	3.22E-02
110	GO:0006096: glycolytic process	3.37E-02
111	GO:0009620: response to fungus	3.61E-02
112	GO:0006810: transport	3.73E-02
113	GO:0006396: RNA processing	3.93E-02
114	GO:0009416: response to light stimulus	4.33E-02
115	GO:0055114: oxidation-reduction process	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0015220: choline transmembrane transporter activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
4	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
5	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
6	GO:0004848: ureidoglycolate hydrolase activity	2.36E-06
7	GO:0046906: tetrapyrrole binding	1.10E-04
8	GO:0004071: aspartate-ammonia ligase activity	1.10E-04
9	GO:0004325: ferrochelatase activity	1.10E-04
10	GO:0051996: squalene synthase activity	1.10E-04
11	GO:0000064: L-ornithine transmembrane transporter activity	2.57E-04
12	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.57E-04
13	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	2.57E-04
14	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	2.57E-04
15	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.57E-04
16	GO:0017118: lipoyltransferase activity	2.57E-04
17	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.57E-04
18	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	2.57E-04
19	GO:0016415: octanoyltransferase activity	2.57E-04
20	GO:0032947: protein complex scaffold	4.25E-04
21	GO:0019003: GDP binding	4.25E-04
22	GO:0003935: GTP cyclohydrolase II activity	4.25E-04
23	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.25E-04
24	GO:0008469: histone-arginine N-methyltransferase activity	4.25E-04
25	GO:0000254: C-4 methylsterol oxidase activity	6.10E-04
26	GO:0000339: RNA cap binding	6.10E-04
27	GO:0047627: adenylylsulfatase activity	6.10E-04
28	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	6.10E-04
29	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	8.10E-04
30	GO:0005319: lipid transporter activity	8.10E-04
31	GO:0048038: quinone binding	8.78E-04
32	GO:0046872: metal ion binding	1.17E-03
33	GO:0004784: superoxide dismutase activity	1.25E-03
34	GO:0004427: inorganic diphosphatase activity	1.75E-03
35	GO:0019899: enzyme binding	1.75E-03
36	GO:0004222: metalloendopeptidase activity	1.78E-03
37	GO:0046914: transition metal ion binding	2.32E-03
38	GO:0071949: FAD binding	2.62E-03
39	GO:0051537: 2 iron, 2 sulfur cluster binding	2.82E-03
40	GO:0031072: heat shock protein binding	4.30E-03
41	GO:0005506: iron ion binding	5.55E-03
42	GO:0051536: iron-sulfur cluster binding	5.84E-03
43	GO:0004176: ATP-dependent peptidase activity	6.67E-03
44	GO:0008080: N-acetyltransferase activity	9.41E-03
45	GO:0008237: metallopeptidase activity	1.30E-02
46	GO:0016168: chlorophyll binding	1.47E-02
47	GO:0042803: protein homodimerization activity	2.08E-02
48	GO:0050661: NADP binding	2.22E-02
49	GO:0004185: serine-type carboxypeptidase activity	2.42E-02
50	GO:0003824: catalytic activity	2.60E-02
51	GO:0005198: structural molecule activity	2.63E-02
52	GO:0009055: electron carrier activity	2.63E-02
53	GO:0051287: NAD binding	2.77E-02
54	GO:0003777: microtubule motor activity	3.22E-02
55	GO:0016491: oxidoreductase activity	3.26E-02
56	GO:0051082: unfolded protein binding	3.85E-02
57	GO:0004386: helicase activity	4.09E-02
58	GO:0003723: RNA binding	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0097218: sieve plate	0.00E+00
3	GO:0009507: chloroplast	5.48E-19
4	GO:0009535: chloroplast thylakoid membrane	1.29E-09
5	GO:0031969: chloroplast membrane	5.49E-05
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.03E-04
7	GO:0000152: nuclear ubiquitin ligase complex	1.10E-04
8	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.10E-04
9	GO:0005845: mRNA cap binding complex	1.10E-04
10	GO:0005846: nuclear cap binding complex	2.57E-04
11	GO:0042646: plastid nucleoid	6.10E-04
12	GO:1990726: Lsm1-7-Pat1 complex	6.10E-04
13	GO:0030286: dynein complex	8.10E-04
14	GO:0009517: PSII associated light-harvesting complex II	8.10E-04
15	GO:0097526: spliceosomal tri-snRNP complex	1.02E-03
16	GO:0055035: plastid thylakoid membrane	1.02E-03
17	GO:0009295: nucleoid	1.12E-03
18	GO:0009570: chloroplast stroma	1.36E-03
19	GO:0005689: U12-type spliceosomal complex	1.49E-03
20	GO:0009941: chloroplast envelope	2.02E-03
21	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	2.03E-03
22	GO:0005688: U6 snRNP	2.03E-03
23	GO:0071004: U2-type prespliceosome	2.03E-03
24	GO:0045273: respiratory chain complex II	2.03E-03
25	GO:0009534: chloroplast thylakoid	2.60E-03
26	GO:0042644: chloroplast nucleoid	2.62E-03
27	GO:0016604: nuclear body	2.93E-03
28	GO:0071013: catalytic step 2 spliceosome	3.59E-03
29	GO:0009508: plastid chromosome	4.30E-03
30	GO:0043234: protein complex	5.44E-03
31	GO:0005769: early endosome	5.44E-03
32	GO:0005875: microtubule associated complex	5.44E-03
33	GO:0009543: chloroplast thylakoid lumen	6.23E-03
34	GO:0042651: thylakoid membrane	6.25E-03
35	GO:0015935: small ribosomal subunit	6.67E-03
36	GO:0009523: photosystem II	1.04E-02
37	GO:0009707: chloroplast outer membrane	1.71E-02
38	GO:0005819: spindle	2.15E-02
39	GO:0005743: mitochondrial inner membrane	2.28E-02
40	GO:0031966: mitochondrial membrane	2.85E-02
41	GO:0009536: plastid	2.99E-02
42	GO:0009706: chloroplast inner membrane	3.85E-02
43	GO:0005732: small nucleolar ribonucleoprotein complex	4.09E-02
44	GO:0010287: plastoglobule	4.34E-02
45	GO:0009524: phragmoplast	4.69E-02
46	GO:0005777: peroxisome	4.95E-02