co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G68585

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
2	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
3	GO:0045930: negative regulation of mitotic cell cycle	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0046085: adenosine metabolic process	0.00E+00
6	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
7	GO:0045740: positive regulation of DNA replication	0.00E+00
8	GO:0048870: cell motility	0.00E+00
9	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
10	GO:0015822: ornithine transport	0.00E+00
11	GO:0032350: regulation of hormone metabolic process	0.00E+00
12	GO:0036172: thiamine salvage	0.00E+00
13	GO:0006526: arginine biosynthetic process	9.46E-05
14	GO:0034971: histone H3-R17 methylation	1.20E-04
15	GO:0000066: mitochondrial ornithine transport	1.20E-04
16	GO:0034970: histone H3-R2 methylation	1.20E-04
17	GO:0034972: histone H3-R26 methylation	1.20E-04
18	GO:0032259: methylation	1.46E-04
19	GO:0007163: establishment or maintenance of cell polarity	2.77E-04
20	GO:0006432: phenylalanyl-tRNA aminoacylation	2.77E-04
21	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.77E-04
22	GO:0019441: tryptophan catabolic process to kynurenine	2.77E-04
23	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.77E-04
24	GO:0044419: interspecies interaction between organisms	2.77E-04
25	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	4.58E-04
26	GO:0046417: chorismate metabolic process	4.58E-04
27	GO:0071492: cellular response to UV-A	4.58E-04
28	GO:0010476: gibberellin mediated signaling pathway	4.58E-04
29	GO:0010325: raffinose family oligosaccharide biosynthetic process	4.58E-04
30	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.58E-04
31	GO:0006591: ornithine metabolic process	4.58E-04
32	GO:0016226: iron-sulfur cluster assembly	5.41E-04
33	GO:0034613: cellular protein localization	8.72E-04
34	GO:0009956: radial pattern formation	8.72E-04
35	GO:0071486: cellular response to high light intensity	8.72E-04
36	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	8.72E-04
37	GO:0009765: photosynthesis, light harvesting	8.72E-04
38	GO:0006221: pyrimidine nucleotide biosynthetic process	8.72E-04
39	GO:0006749: glutathione metabolic process	8.72E-04
40	GO:0006281: DNA repair	9.78E-04
41	GO:0030041: actin filament polymerization	1.10E-03
42	GO:0009229: thiamine diphosphate biosynthetic process	1.10E-03
43	GO:0006544: glycine metabolic process	1.10E-03
44	GO:0010090: trichome morphogenesis	1.11E-03
45	GO:0006796: phosphate-containing compound metabolic process	1.35E-03
46	GO:0009117: nucleotide metabolic process	1.35E-03
47	GO:0006574: valine catabolic process	1.35E-03
48	GO:0006014: D-ribose metabolic process	1.35E-03
49	GO:0006563: L-serine metabolic process	1.35E-03
50	GO:0016070: RNA metabolic process	1.35E-03
51	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.35E-03
52	GO:0031053: primary miRNA processing	1.35E-03
53	GO:0000741: karyogamy	1.35E-03
54	GO:0009228: thiamine biosynthetic process	1.35E-03
55	GO:0009099: valine biosynthetic process	1.61E-03
56	GO:0048444: floral organ morphogenesis	1.61E-03
57	GO:0034389: lipid particle organization	1.61E-03
58	GO:0006888: ER to Golgi vesicle-mediated transport	1.63E-03
59	GO:0007050: cell cycle arrest	1.89E-03
60	GO:0000082: G1/S transition of mitotic cell cycle	1.89E-03
61	GO:0000028: ribosomal small subunit assembly	2.19E-03
62	GO:0045010: actin nucleation	2.19E-03
63	GO:0045292: mRNA cis splicing, via spliceosome	2.19E-03
64	GO:0010928: regulation of auxin mediated signaling pathway	2.19E-03
65	GO:0019430: removal of superoxide radicals	2.50E-03
66	GO:0009097: isoleucine biosynthetic process	2.50E-03
67	GO:0010100: negative regulation of photomorphogenesis	2.50E-03
68	GO:0009056: catabolic process	2.82E-03
69	GO:0000902: cell morphogenesis	2.82E-03
70	GO:0019432: triglyceride biosynthetic process	2.82E-03
71	GO:0008356: asymmetric cell division	3.16E-03
72	GO:0035999: tetrahydrofolate interconversion	3.16E-03
73	GO:0009098: leucine biosynthetic process	3.16E-03
74	GO:0072593: reactive oxygen species metabolic process	3.88E-03
75	GO:0009073: aromatic amino acid family biosynthetic process	3.88E-03
76	GO:0045454: cell redox homeostasis	4.06E-03
77	GO:0006094: gluconeogenesis	4.64E-03
78	GO:0010102: lateral root morphogenesis	4.64E-03
79	GO:0010020: chloroplast fission	5.04E-03
80	GO:0006071: glycerol metabolic process	5.88E-03
81	GO:0034976: response to endoplasmic reticulum stress	5.88E-03
82	GO:0010431: seed maturation	7.22E-03
83	GO:0019915: lipid storage	7.22E-03
84	GO:0006012: galactose metabolic process	8.18E-03
85	GO:0080022: primary root development	9.68E-03
86	GO:0000413: protein peptidyl-prolyl isomerization	9.68E-03
87	GO:0009958: positive gravitropism	1.02E-02
88	GO:0006520: cellular amino acid metabolic process	1.02E-02
89	GO:0006662: glycerol ether metabolic process	1.02E-02
90	GO:0010197: polar nucleus fusion	1.02E-02
91	GO:0055072: iron ion homeostasis	1.13E-02
92	GO:0080156: mitochondrial mRNA modification	1.18E-02
93	GO:0007264: small GTPase mediated signal transduction	1.24E-02
94	GO:0016126: sterol biosynthetic process	1.54E-02
95	GO:0006974: cellular response to DNA damage stimulus	1.66E-02
96	GO:0048366: leaf development	1.76E-02
97	GO:0010311: lateral root formation	1.92E-02
98	GO:0009407: toxin catabolic process	1.99E-02
99	GO:0048527: lateral root development	2.05E-02
100	GO:0034599: cellular response to oxidative stress	2.26E-02
101	GO:0006839: mitochondrial transport	2.41E-02
102	GO:0009926: auxin polar transport	2.63E-02
103	GO:0000154: rRNA modification	2.85E-02
104	GO:0009636: response to toxic substance	2.85E-02
105	GO:0009965: leaf morphogenesis	2.85E-02
106	GO:0009585: red, far-red light phototransduction	3.25E-02
107	GO:0010224: response to UV-B	3.33E-02
108	GO:0009909: regulation of flower development	3.49E-02
109	GO:0006096: glycolytic process	3.66E-02
110	GO:0048367: shoot system development	3.74E-02
111	GO:0016569: covalent chromatin modification	4.00E-02
112	GO:0006396: RNA processing	4.26E-02
113	GO:0051726: regulation of cell cycle	4.35E-02
114	GO:0009742: brassinosteroid mediated signaling pathway	4.35E-02
115	GO:0000398: mRNA splicing, via spliceosome	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
2	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
3	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
4	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
5	GO:0008168: methyltransferase activity	2.72E-06
6	GO:0004106: chorismate mutase activity	2.77E-04
7	GO:0004061: arylformamidase activity	2.77E-04
8	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	2.77E-04
9	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	2.77E-04
10	GO:0010331: gibberellin binding	2.77E-04
11	GO:0000064: L-ornithine transmembrane transporter activity	2.77E-04
12	GO:0004826: phenylalanine-tRNA ligase activity	2.77E-04
13	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.77E-04
14	GO:0016743: carboxyl- or carbamoyltransferase activity	2.77E-04
15	GO:0035241: protein-arginine omega-N monomethyltransferase activity	2.77E-04
16	GO:0032403: protein complex binding	4.58E-04
17	GO:0008649: rRNA methyltransferase activity	4.58E-04
18	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	4.58E-04
19	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.58E-04
20	GO:0008469: histone-arginine N-methyltransferase activity	4.58E-04
21	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	4.58E-04
22	GO:0004848: ureidoglycolate hydrolase activity	4.58E-04
23	GO:0019003: GDP binding	4.58E-04
24	GO:0035529: NADH pyrophosphatase activity	6.57E-04
25	GO:0052656: L-isoleucine transaminase activity	6.57E-04
26	GO:0000339: RNA cap binding	6.57E-04
27	GO:0052654: L-leucine transaminase activity	6.57E-04
28	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	6.57E-04
29	GO:0052655: L-valine transaminase activity	6.57E-04
30	GO:0000254: C-4 methylsterol oxidase activity	6.57E-04
31	GO:0008080: N-acetyltransferase activity	8.00E-04
32	GO:0005319: lipid transporter activity	8.72E-04
33	GO:0004084: branched-chain-amino-acid transaminase activity	8.72E-04
34	GO:0004372: glycine hydroxymethyltransferase activity	1.10E-03
35	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.35E-03
36	GO:0004784: superoxide dismutase activity	1.35E-03
37	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.61E-03
38	GO:0004144: diacylglycerol O-acyltransferase activity	1.61E-03
39	GO:0004747: ribokinase activity	1.61E-03
40	GO:0008143: poly(A) binding	1.89E-03
41	GO:0042162: telomeric DNA binding	1.89E-03
42	GO:0004427: inorganic diphosphatase activity	1.89E-03
43	GO:0003824: catalytic activity	1.93E-03
44	GO:0004525: ribonuclease III activity	2.19E-03
45	GO:0004034: aldose 1-epimerase activity	2.19E-03
46	GO:0003697: single-stranded DNA binding	2.28E-03
47	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.82E-03
48	GO:0001055: RNA polymerase II activity	3.16E-03
49	GO:0008047: enzyme activator activity	3.51E-03
50	GO:0051287: NAD binding	3.53E-03
51	GO:0001054: RNA polymerase I activity	3.88E-03
52	GO:0004860: protein kinase inhibitor activity	3.88E-03
53	GO:0001056: RNA polymerase III activity	4.26E-03
54	GO:0000049: tRNA binding	4.26E-03
55	GO:0015035: protein disulfide oxidoreductase activity	5.75E-03
56	GO:0030170: pyridoxal phosphate binding	7.75E-03
57	GO:0003756: protein disulfide isomerase activity	8.66E-03
58	GO:0047134: protein-disulfide reductase activity	9.17E-03
59	GO:0004791: thioredoxin-disulfide reductase activity	1.07E-02
60	GO:0016853: isomerase activity	1.07E-02
61	GO:0042802: identical protein binding	1.23E-02
62	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.30E-02
63	GO:0046982: protein heterodimerization activity	1.47E-02
64	GO:0016597: amino acid binding	1.47E-02
65	GO:0016168: chlorophyll binding	1.60E-02
66	GO:0008375: acetylglucosaminyltransferase activity	1.66E-02
67	GO:0050661: NADP binding	2.41E-02
68	GO:0004364: glutathione transferase activity	2.55E-02
69	GO:0003924: GTPase activity	2.74E-02
70	GO:0051537: 2 iron, 2 sulfur cluster binding	2.78E-02
71	GO:0043621: protein self-association	2.78E-02
72	GO:0005515: protein binding	2.92E-02
73	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-02
74	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.25E-02
75	GO:0008234: cysteine-type peptidase activity	3.49E-02
76	GO:0022857: transmembrane transporter activity	4.00E-02
77	GO:0004386: helicase activity	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0055037: recycling endosome	0.00E+00
3	GO:0030427: site of polarized growth	0.00E+00
4	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.20E-04
5	GO:0005845: mRNA cap binding complex	1.20E-04
6	GO:0005846: nuclear cap binding complex	2.77E-04
7	GO:0005697: telomerase holoenzyme complex	2.77E-04
8	GO:0009507: chloroplast	3.50E-04
9	GO:0042646: plastid nucleoid	6.57E-04
10	GO:0009295: nucleoid	1.24E-03
11	GO:0031209: SCAR complex	1.35E-03
12	GO:0032588: trans-Golgi network membrane	1.35E-03
13	GO:0005811: lipid particle	2.50E-03
14	GO:0005763: mitochondrial small ribosomal subunit	2.82E-03
15	GO:0005736: DNA-directed RNA polymerase I complex	2.82E-03
16	GO:0042644: chloroplast nucleoid	2.82E-03
17	GO:0005666: DNA-directed RNA polymerase III complex	3.16E-03
18	GO:0005665: DNA-directed RNA polymerase II, core complex	4.26E-03
19	GO:0009508: plastid chromosome	4.64E-03
20	GO:0009706: chloroplast inner membrane	5.58E-03
21	GO:0005769: early endosome	5.88E-03
22	GO:0000419: DNA-directed RNA polymerase V complex	5.88E-03
23	GO:0005770: late endosome	1.02E-02
24	GO:0005737: cytoplasm	1.08E-02
25	GO:0009523: photosystem II	1.13E-02
26	GO:0005789: endoplasmic reticulum membrane	1.29E-02
27	GO:0071944: cell periphery	1.30E-02
28	GO:0005829: cytosol	1.68E-02
29	GO:0009707: chloroplast outer membrane	1.85E-02
30	GO:0005819: spindle	2.33E-02
31	GO:0005856: cytoskeleton	2.85E-02
32	GO:0016607: nuclear speck	3.74E-02
33	GO:0005834: heterotrimeric G-protein complex	3.83E-02
34	GO:0005794: Golgi apparatus	4.36E-02
35	GO:0005654: nucleoplasm	4.80E-02