co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G68520

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048870: cell motility	0.00E+00
2	GO:0009249: protein lipoylation	0.00E+00
3	GO:0015822: ornithine transport	0.00E+00
4	GO:0009106: lipoate metabolic process	0.00E+00
5	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
6	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
7	GO:0046085: adenosine metabolic process	0.00E+00
8	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
9	GO:0034053: modulation by symbiont of host defense-related programmed cell death	0.00E+00
10	GO:0045740: positive regulation of DNA replication	0.00E+00
11	GO:0032259: methylation	2.06E-05
12	GO:0000066: mitochondrial ornithine transport	1.30E-04
13	GO:0043407: negative regulation of MAP kinase activity	1.30E-04
14	GO:0033206: meiotic cytokinesis	1.30E-04
15	GO:0071712: ER-associated misfolded protein catabolic process	2.99E-04
16	GO:0006420: arginyl-tRNA aminoacylation	2.99E-04
17	GO:0007163: establishment or maintenance of cell polarity	2.99E-04
18	GO:0006432: phenylalanyl-tRNA aminoacylation	2.99E-04
19	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.99E-04
20	GO:0060145: viral gene silencing in virus induced gene silencing	4.92E-04
21	GO:0010476: gibberellin mediated signaling pathway	4.92E-04
22	GO:0010325: raffinose family oligosaccharide biosynthetic process	4.92E-04
23	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.92E-04
24	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	4.92E-04
25	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	4.92E-04
26	GO:0034051: negative regulation of plant-type hypersensitive response	4.92E-04
27	GO:0046417: chorismate metabolic process	4.92E-04
28	GO:0071492: cellular response to UV-A	4.92E-04
29	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	4.92E-04
30	GO:0016226: iron-sulfur cluster assembly	6.01E-04
31	GO:0006516: glycoprotein catabolic process	7.04E-04
32	GO:0071486: cellular response to high light intensity	9.34E-04
33	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	9.34E-04
34	GO:0009765: photosynthesis, light harvesting	9.34E-04
35	GO:0071249: cellular response to nitrate	9.34E-04
36	GO:0006749: glutathione metabolic process	9.34E-04
37	GO:0006808: regulation of nitrogen utilization	9.34E-04
38	GO:0009107: lipoate biosynthetic process	1.18E-03
39	GO:0030041: actin filament polymerization	1.18E-03
40	GO:0010090: trichome morphogenesis	1.23E-03
41	GO:0016070: RNA metabolic process	1.45E-03
42	GO:0051568: histone H3-K4 methylation	1.45E-03
43	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.45E-03
44	GO:0031053: primary miRNA processing	1.45E-03
45	GO:0045962: positive regulation of development, heterochronic	1.45E-03
46	GO:0042793: transcription from plastid promoter	1.45E-03
47	GO:0006574: valine catabolic process	1.45E-03
48	GO:0006014: D-ribose metabolic process	1.45E-03
49	GO:2000033: regulation of seed dormancy process	1.73E-03
50	GO:0009099: valine biosynthetic process	1.73E-03
51	GO:0048444: floral organ morphogenesis	1.73E-03
52	GO:0007050: cell cycle arrest	2.04E-03
53	GO:0006826: iron ion transport	2.04E-03
54	GO:0000082: G1/S transition of mitotic cell cycle	2.04E-03
55	GO:0035196: production of miRNAs involved in gene silencing by miRNA	2.04E-03
56	GO:0048527: lateral root development	2.32E-03
57	GO:0045292: mRNA cis splicing, via spliceosome	2.36E-03
58	GO:0010928: regulation of auxin mediated signaling pathway	2.36E-03
59	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	2.36E-03
60	GO:0009704: de-etiolation	2.36E-03
61	GO:0000028: ribosomal small subunit assembly	2.36E-03
62	GO:0045010: actin nucleation	2.36E-03
63	GO:0010233: phloem transport	2.69E-03
64	GO:0019430: removal of superoxide radicals	2.69E-03
65	GO:0009097: isoleucine biosynthetic process	2.69E-03
66	GO:0006839: mitochondrial transport	2.88E-03
67	GO:0015780: nucleotide-sugar transport	3.04E-03
68	GO:0009056: catabolic process	3.04E-03
69	GO:0000902: cell morphogenesis	3.04E-03
70	GO:0009098: leucine biosynthetic process	3.41E-03
71	GO:0010267: production of ta-siRNAs involved in RNA interference	3.41E-03
72	GO:0009965: leaf morphogenesis	3.66E-03
73	GO:0009073: aromatic amino acid family biosynthetic process	4.18E-03
74	GO:0010152: pollen maturation	4.58E-03
75	GO:0006094: gluconeogenesis	5.00E-03
76	GO:0010102: lateral root morphogenesis	5.00E-03
77	GO:0010020: chloroplast fission	5.44E-03
78	GO:0080188: RNA-directed DNA methylation	5.88E-03
79	GO:0010039: response to iron ion	5.88E-03
80	GO:0034976: response to endoplasmic reticulum stress	6.34E-03
81	GO:0009863: salicylic acid mediated signaling pathway	6.81E-03
82	GO:0010187: negative regulation of seed germination	6.81E-03
83	GO:0051017: actin filament bundle assembly	6.81E-03
84	GO:0006289: nucleotide-excision repair	6.81E-03
85	GO:2000377: regulation of reactive oxygen species metabolic process	6.81E-03
86	GO:0016575: histone deacetylation	7.30E-03
87	GO:0006306: DNA methylation	7.79E-03
88	GO:0006012: galactose metabolic process	8.82E-03
89	GO:0048443: stamen development	9.35E-03
90	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.90E-03
91	GO:0080022: primary root development	1.04E-02
92	GO:0009958: positive gravitropism	1.10E-02
93	GO:0009739: response to gibberellin	1.20E-02
94	GO:0080156: mitochondrial mRNA modification	1.28E-02
95	GO:0010193: response to ozone	1.28E-02
96	GO:0007264: small GTPase mediated signal transduction	1.34E-02
97	GO:0031047: gene silencing by RNA	1.34E-02
98	GO:0051607: defense response to virus	1.59E-02
99	GO:0016126: sterol biosynthetic process	1.66E-02
100	GO:0010029: regulation of seed germination	1.73E-02
101	GO:0048366: leaf development	1.97E-02
102	GO:0010311: lateral root formation	2.07E-02
103	GO:0009407: toxin catabolic process	2.15E-02
104	GO:0010218: response to far red light	2.15E-02
105	GO:0009867: jasmonic acid mediated signaling pathway	2.37E-02
106	GO:0034599: cellular response to oxidative stress	2.45E-02
107	GO:0008643: carbohydrate transport	3.00E-02
108	GO:0000154: rRNA modification	3.08E-02
109	GO:0009636: response to toxic substance	3.08E-02
110	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.25E-02
111	GO:0042538: hyperosmotic salinity response	3.34E-02
112	GO:0010224: response to UV-B	3.60E-02
113	GO:0006417: regulation of translation	3.77E-02
114	GO:0006096: glycolytic process	3.95E-02
115	GO:0048367: shoot system development	4.04E-02
116	GO:0016569: covalent chromatin modification	4.32E-02
117	GO:0009740: gibberellic acid mediated signaling pathway	4.32E-02
118	GO:0009742: brassinosteroid mediated signaling pathway	4.70E-02
119	GO:0006810: transport	4.90E-02
120	GO:0000398: mRNA splicing, via spliceosome	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
2	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
3	GO:0008168: methyltransferase activity	3.76E-06
4	GO:0033549: MAP kinase phosphatase activity	1.30E-04
5	GO:0004560: alpha-L-fucosidase activity	1.30E-04
6	GO:0004814: arginine-tRNA ligase activity	2.99E-04
7	GO:0016415: octanoyltransferase activity	2.99E-04
8	GO:0000064: L-ornithine transmembrane transporter activity	2.99E-04
9	GO:0004826: phenylalanine-tRNA ligase activity	2.99E-04
10	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.99E-04
11	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.99E-04
12	GO:0004106: chorismate mutase activity	2.99E-04
13	GO:0017118: lipoyltransferase activity	2.99E-04
14	GO:0010331: gibberellin binding	2.99E-04
15	GO:0044390: ubiquitin-like protein conjugating enzyme binding	2.99E-04
16	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	4.92E-04
17	GO:0019003: GDP binding	4.92E-04
18	GO:0032403: protein complex binding	4.92E-04
19	GO:0008649: rRNA methyltransferase activity	4.92E-04
20	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	4.92E-04
21	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	4.92E-04
22	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	7.04E-04
23	GO:0052655: L-valine transaminase activity	7.04E-04
24	GO:0000254: C-4 methylsterol oxidase activity	7.04E-04
25	GO:0052656: L-isoleucine transaminase activity	7.04E-04
26	GO:0000339: RNA cap binding	7.04E-04
27	GO:0052654: L-leucine transaminase activity	7.04E-04
28	GO:0022857: transmembrane transporter activity	7.67E-04
29	GO:0008080: N-acetyltransferase activity	8.87E-04
30	GO:0005319: lipid transporter activity	9.34E-04
31	GO:0010011: auxin binding	9.34E-04
32	GO:0004084: branched-chain-amino-acid transaminase activity	9.34E-04
33	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	9.34E-04
34	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.45E-03
35	GO:0004784: superoxide dismutase activity	1.45E-03
36	GO:0004747: ribokinase activity	1.73E-03
37	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.73E-03
38	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.04E-03
39	GO:0004034: aldose 1-epimerase activity	2.36E-03
40	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.04E-03
41	GO:0000989: transcription factor activity, transcription factor binding	3.04E-03
42	GO:0008047: enzyme activator activity	3.79E-03
43	GO:0004864: protein phosphatase inhibitor activity	3.79E-03
44	GO:0051287: NAD binding	3.93E-03
45	GO:0004860: protein kinase inhibitor activity	4.18E-03
46	GO:0000049: tRNA binding	4.58E-03
47	GO:0003725: double-stranded RNA binding	5.00E-03
48	GO:0008131: primary amine oxidase activity	5.44E-03
49	GO:0004725: protein tyrosine phosphatase activity	6.34E-03
50	GO:0003756: protein disulfide isomerase activity	9.35E-03
51	GO:0005515: protein binding	1.18E-02
52	GO:0004872: receptor activity	1.22E-02
53	GO:0051015: actin filament binding	1.40E-02
54	GO:0016168: chlorophyll binding	1.73E-02
55	GO:0008375: acetylglucosaminyltransferase activity	1.79E-02
56	GO:0050661: NADP binding	2.60E-02
57	GO:0003723: RNA binding	2.64E-02
58	GO:0004364: glutathione transferase activity	2.76E-02
59	GO:0003824: catalytic activity	3.43E-02
60	GO:0008234: cysteine-type peptidase activity	3.77E-02
61	GO:0003779: actin binding	4.41E-02
62	GO:0004842: ubiquitin-protein transferase activity	4.56E-02
63	GO:0008026: ATP-dependent helicase activity	4.70E-02
64	GO:0004386: helicase activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0097361: CIA complex	0.00E+00
3	GO:0005675: holo TFIIH complex	0.00E+00
4	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.30E-04
5	GO:0005845: mRNA cap binding complex	1.30E-04
6	GO:0005846: nuclear cap binding complex	2.99E-04
7	GO:0005856: cytoskeleton	4.21E-04
8	GO:0000439: core TFIIH complex	4.92E-04
9	GO:0042646: plastid nucleoid	7.04E-04
10	GO:0036513: Derlin-1 retrotranslocation complex	7.04E-04
11	GO:0009706: chloroplast inner membrane	8.26E-04
12	GO:0009295: nucleoid	1.38E-03
13	GO:0031209: SCAR complex	1.45E-03
14	GO:0005801: cis-Golgi network	1.73E-03
15	GO:0005737: cytoplasm	1.80E-03
16	GO:0042644: chloroplast nucleoid	3.04E-03
17	GO:0005763: mitochondrial small ribosomal subunit	3.04E-03
18	GO:0009508: plastid chromosome	5.00E-03
19	GO:0000419: DNA-directed RNA polymerase V complex	6.34E-03
20	GO:0015629: actin cytoskeleton	8.82E-03
21	GO:0009523: photosystem II	1.22E-02
22	GO:0071944: cell periphery	1.40E-02
23	GO:0009507: chloroplast	1.41E-02
24	GO:0009707: chloroplast outer membrane	2.00E-02
25	GO:0005819: spindle	2.52E-02
26	GO:0005743: mitochondrial inner membrane	2.85E-02
27	GO:0005834: heterotrimeric G-protein complex	4.14E-02