co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G67740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
2	GO:0010966: regulation of phosphate transport	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:0015827: tryptophan transport	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0090706: specification of plant organ position	0.00E+00
7	GO:0009715: chalcone biosynthetic process	0.00E+00
8	GO:0061635: regulation of protein complex stability	0.00E+00
9	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
10	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
11	GO:0005996: monosaccharide metabolic process	0.00E+00
12	GO:0007638: mechanosensory behavior	0.00E+00
13	GO:0015810: aspartate transport	0.00E+00
14	GO:0007172: signal complex assembly	0.00E+00
15	GO:0006114: glycerol biosynthetic process	0.00E+00
16	GO:0042493: response to drug	0.00E+00
17	GO:0015979: photosynthesis	7.59E-17
18	GO:0010027: thylakoid membrane organization	1.05E-10
19	GO:0018298: protein-chromophore linkage	3.39E-10
20	GO:0009768: photosynthesis, light harvesting in photosystem I	2.90E-09
21	GO:0042549: photosystem II stabilization	1.54E-08
22	GO:0010207: photosystem II assembly	4.68E-08
23	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.96E-07
24	GO:0019684: photosynthesis, light reaction	1.05E-06
25	GO:0009773: photosynthetic electron transport in photosystem I	1.05E-06
26	GO:0035304: regulation of protein dephosphorylation	5.06E-06
27	GO:0010196: nonphotochemical quenching	6.86E-06
28	GO:0009769: photosynthesis, light harvesting in photosystem II	6.86E-06
29	GO:0090391: granum assembly	1.79E-05
30	GO:0010206: photosystem II repair	2.06E-05
31	GO:0009765: photosynthesis, light harvesting	7.06E-05
32	GO:0006109: regulation of carbohydrate metabolic process	7.06E-05
33	GO:0015995: chlorophyll biosynthetic process	1.05E-04
34	GO:0010218: response to far red light	1.51E-04
35	GO:0009658: chloroplast organization	1.54E-04
36	GO:0009645: response to low light intensity stimulus	2.83E-04
37	GO:0010114: response to red light	2.94E-04
38	GO:0065002: intracellular protein transmembrane transport	3.34E-04
39	GO:0043686: co-translational protein modification	3.34E-04
40	GO:0043007: maintenance of rDNA	3.34E-04
41	GO:1902458: positive regulation of stomatal opening	3.34E-04
42	GO:0034337: RNA folding	3.34E-04
43	GO:0010450: inflorescence meristem growth	3.34E-04
44	GO:0043953: protein transport by the Tat complex	3.34E-04
45	GO:1904966: positive regulation of vitamin E biosynthetic process	3.34E-04
46	GO:0000481: maturation of 5S rRNA	3.34E-04
47	GO:1904964: positive regulation of phytol biosynthetic process	3.34E-04
48	GO:0006810: transport	5.90E-04
49	GO:0010205: photoinhibition	6.19E-04
50	GO:0006729: tetrahydrobiopterin biosynthetic process	7.29E-04
51	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.29E-04
52	GO:0080181: lateral root branching	7.29E-04
53	GO:0009629: response to gravity	7.29E-04
54	GO:1902326: positive regulation of chlorophyll biosynthetic process	7.29E-04
55	GO:0006432: phenylalanyl-tRNA aminoacylation	7.29E-04
56	GO:0018026: peptidyl-lysine monomethylation	7.29E-04
57	GO:0009073: aromatic amino acid family biosynthetic process	8.32E-04
58	GO:0043085: positive regulation of catalytic activity	8.32E-04
59	GO:0016311: dephosphorylation	1.00E-03
60	GO:0005977: glycogen metabolic process	1.18E-03
61	GO:0045165: cell fate commitment	1.18E-03
62	GO:0006954: inflammatory response	1.18E-03
63	GO:0009405: pathogenesis	1.18E-03
64	GO:0009637: response to blue light	1.43E-03
65	GO:0006020: inositol metabolic process	1.70E-03
66	GO:0007231: osmosensory signaling pathway	1.70E-03
67	GO:0071484: cellular response to light intensity	1.70E-03
68	GO:0009650: UV protection	1.70E-03
69	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.70E-03
70	GO:1901332: negative regulation of lateral root development	1.70E-03
71	GO:0042989: sequestering of actin monomers	1.70E-03
72	GO:0019915: lipid storage	2.02E-03
73	GO:0061077: chaperone-mediated protein folding	2.02E-03
74	GO:0009269: response to desiccation	2.02E-03
75	GO:0009644: response to high light intensity	2.19E-03
76	GO:0010021: amylopectin biosynthetic process	2.28E-03
77	GO:0015976: carbon utilization	2.28E-03
78	GO:0045727: positive regulation of translation	2.28E-03
79	GO:0015994: chlorophyll metabolic process	2.28E-03
80	GO:0022622: root system development	2.28E-03
81	GO:0030104: water homeostasis	2.28E-03
82	GO:0033500: carbohydrate homeostasis	2.28E-03
83	GO:0006552: leucine catabolic process	2.28E-03
84	GO:0006021: inositol biosynthetic process	2.28E-03
85	GO:0031365: N-terminal protein amino acid modification	2.91E-03
86	GO:0035434: copper ion transmembrane transport	2.91E-03
87	GO:1902183: regulation of shoot apical meristem development	2.91E-03
88	GO:0010158: abaxial cell fate specification	2.91E-03
89	GO:0030041: actin filament polymerization	2.91E-03
90	GO:0006656: phosphatidylcholine biosynthetic process	2.91E-03
91	GO:0045038: protein import into chloroplast thylakoid membrane	2.91E-03
92	GO:0042631: cellular response to water deprivation	3.06E-03
93	GO:0006662: glycerol ether metabolic process	3.30E-03
94	GO:0042793: transcription from plastid promoter	3.60E-03
95	GO:0046855: inositol phosphate dephosphorylation	3.60E-03
96	GO:0009635: response to herbicide	3.60E-03
97	GO:0032502: developmental process	4.35E-03
98	GO:0009409: response to cold	4.42E-03
99	GO:0032880: regulation of protein localization	5.11E-03
100	GO:0071446: cellular response to salicylic acid stimulus	5.11E-03
101	GO:1900057: positive regulation of leaf senescence	5.11E-03
102	GO:0022904: respiratory electron transport chain	5.11E-03
103	GO:0051510: regulation of unidimensional cell growth	5.11E-03
104	GO:0031540: regulation of anthocyanin biosynthetic process	5.94E-03
105	GO:0009231: riboflavin biosynthetic process	5.94E-03
106	GO:0016559: peroxisome fission	5.94E-03
107	GO:0048564: photosystem I assembly	5.94E-03
108	GO:0030091: protein repair	5.94E-03
109	GO:0009642: response to light intensity	5.94E-03
110	GO:0032508: DNA duplex unwinding	5.94E-03
111	GO:2000070: regulation of response to water deprivation	5.94E-03
112	GO:0009416: response to light stimulus	6.32E-03
113	GO:0045454: cell redox homeostasis	6.61E-03
114	GO:0017004: cytochrome complex assembly	6.81E-03
115	GO:0010093: specification of floral organ identity	6.81E-03
116	GO:2000031: regulation of salicylic acid mediated signaling pathway	6.81E-03
117	GO:0015996: chlorophyll catabolic process	6.81E-03
118	GO:0007186: G-protein coupled receptor signaling pathway	6.81E-03
119	GO:0032544: plastid translation	6.81E-03
120	GO:0042742: defense response to bacterium	7.13E-03
121	GO:0006098: pentose-phosphate shunt	7.73E-03
122	GO:2000024: regulation of leaf development	7.73E-03
123	GO:0090333: regulation of stomatal closure	7.73E-03
124	GO:0006779: porphyrin-containing compound biosynthetic process	8.68E-03
125	GO:0048527: lateral root development	8.91E-03
126	GO:0006782: protoporphyrinogen IX biosynthetic process	9.69E-03
127	GO:0034599: cellular response to oxidative stress	1.02E-02
128	GO:0006816: calcium ion transport	1.07E-02
129	GO:0006913: nucleocytoplasmic transport	1.07E-02
130	GO:0009089: lysine biosynthetic process via diaminopimelate	1.07E-02
131	GO:0000272: polysaccharide catabolic process	1.07E-02
132	GO:0018119: peptidyl-cysteine S-nitrosylation	1.07E-02
133	GO:0071365: cellular response to auxin stimulus	1.18E-02
134	GO:0006790: sulfur compound metabolic process	1.18E-02
135	GO:0005983: starch catabolic process	1.18E-02
136	GO:0045037: protein import into chloroplast stroma	1.18E-02
137	GO:0006094: gluconeogenesis	1.29E-02
138	GO:0009767: photosynthetic electron transport chain	1.29E-02
139	GO:2000012: regulation of auxin polar transport	1.29E-02
140	GO:0009934: regulation of meristem structural organization	1.41E-02
141	GO:0006302: double-strand break repair	1.41E-02
142	GO:0010020: chloroplast fission	1.41E-02
143	GO:0009933: meristem structural organization	1.41E-02
144	GO:0010030: positive regulation of seed germination	1.53E-02
145	GO:0070588: calcium ion transmembrane transport	1.53E-02
146	GO:0046854: phosphatidylinositol phosphorylation	1.53E-02
147	GO:0019853: L-ascorbic acid biosynthetic process	1.53E-02
148	GO:0090351: seedling development	1.53E-02
149	GO:0006364: rRNA processing	1.71E-02
150	GO:0009944: polarity specification of adaxial/abaxial axis	1.77E-02
151	GO:0007010: cytoskeleton organization	1.77E-02
152	GO:0009909: regulation of flower development	1.89E-02
153	GO:0009735: response to cytokinin	1.89E-02
154	GO:0006825: copper ion transport	1.90E-02
155	GO:0019953: sexual reproduction	1.90E-02
156	GO:0006096: glycolytic process	2.02E-02
157	GO:0043086: negative regulation of catalytic activity	2.02E-02
158	GO:0048511: rhythmic process	2.03E-02
159	GO:0051321: meiotic cell cycle	2.03E-02
160	GO:0006979: response to oxidative stress	2.16E-02
161	GO:0071369: cellular response to ethylene stimulus	2.31E-02
162	GO:0006012: galactose metabolic process	2.31E-02
163	GO:0071215: cellular response to abscisic acid stimulus	2.31E-02
164	GO:0009411: response to UV	2.31E-02
165	GO:0009561: megagametogenesis	2.45E-02
166	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.60E-02
167	GO:0070417: cellular response to cold	2.60E-02
168	GO:0008284: positive regulation of cell proliferation	2.60E-02
169	GO:0010182: sugar mediated signaling pathway	2.89E-02
170	GO:0009958: positive gravitropism	2.89E-02
171	GO:0006520: cellular amino acid metabolic process	2.89E-02
172	GO:0010154: fruit development	2.89E-02
173	GO:0009737: response to abscisic acid	3.02E-02
174	GO:0042752: regulation of circadian rhythm	3.05E-02
175	GO:0009646: response to absence of light	3.05E-02
176	GO:0009791: post-embryonic development	3.20E-02
177	GO:0019252: starch biosynthetic process	3.20E-02
178	GO:0032259: methylation	3.21E-02
179	GO:0009845: seed germination	3.30E-02
180	GO:0006412: translation	3.33E-02
181	GO:0071554: cell wall organization or biogenesis	3.36E-02
182	GO:0006281: DNA repair	3.39E-02
183	GO:0048235: pollen sperm cell differentiation	3.52E-02
184	GO:0009567: double fertilization forming a zygote and endosperm	3.85E-02
185	GO:0007623: circadian rhythm	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
2	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
6	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
7	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
8	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
9	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
10	GO:0010242: oxygen evolving activity	0.00E+00
11	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
12	GO:0048039: ubiquinone binding	0.00E+00
13	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
14	GO:0031409: pigment binding	1.40E-09
15	GO:0016168: chlorophyll binding	5.48E-09
16	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.69E-07
17	GO:0008266: poly(U) RNA binding	2.63E-06
18	GO:0003959: NADPH dehydrogenase activity	1.11E-04
19	GO:0005528: FK506 binding	1.38E-04
20	GO:0004462: lactoylglutathione lyase activity	1.60E-04
21	GO:0019843: rRNA binding	1.96E-04
22	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.34E-04
23	GO:0050308: sugar-phosphatase activity	3.34E-04
24	GO:0019203: carbohydrate phosphatase activity	3.34E-04
25	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	3.34E-04
26	GO:0042586: peptide deformylase activity	3.34E-04
27	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.34E-04
28	GO:0004033: aldo-keto reductase (NADP) activity	3.55E-04
29	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.77E-04
30	GO:0048038: quinone binding	4.78E-04
31	GO:0008047: enzyme activator activity	7.22E-04
32	GO:0047746: chlorophyllase activity	7.29E-04
33	GO:0010297: heteropolysaccharide binding	7.29E-04
34	GO:0009977: proton motive force dependent protein transmembrane transporter activity	7.29E-04
35	GO:0052832: inositol monophosphate 3-phosphatase activity	7.29E-04
36	GO:0016630: protochlorophyllide reductase activity	7.29E-04
37	GO:0008934: inositol monophosphate 1-phosphatase activity	7.29E-04
38	GO:0019172: glyoxalase III activity	7.29E-04
39	GO:0019156: isoamylase activity	7.29E-04
40	GO:0052833: inositol monophosphate 4-phosphatase activity	7.29E-04
41	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	7.29E-04
42	GO:0004826: phenylalanine-tRNA ligase activity	7.29E-04
43	GO:0000234: phosphoethanolamine N-methyltransferase activity	7.29E-04
44	GO:0015172: acidic amino acid transmembrane transporter activity	7.29E-04
45	GO:0031072: heat shock protein binding	1.07E-03
46	GO:0004324: ferredoxin-NADP+ reductase activity	1.18E-03
47	GO:0003913: DNA photolyase activity	1.18E-03
48	GO:0090729: toxin activity	1.18E-03
49	GO:0004857: enzyme inhibitor activity	1.66E-03
50	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.70E-03
51	GO:0015175: neutral amino acid transmembrane transporter activity	1.70E-03
52	GO:0016851: magnesium chelatase activity	1.70E-03
53	GO:0005509: calcium ion binding	1.91E-03
54	GO:0016279: protein-lysine N-methyltransferase activity	2.28E-03
55	GO:0004045: aminoacyl-tRNA hydrolase activity	2.28E-03
56	GO:0080032: methyl jasmonate esterase activity	2.28E-03
57	GO:0043495: protein anchor	2.28E-03
58	GO:0042802: identical protein binding	2.68E-03
59	GO:0047134: protein-disulfide reductase activity	2.84E-03
60	GO:0003785: actin monomer binding	2.91E-03
61	GO:0004791: thioredoxin-disulfide reductase activity	3.55E-03
62	GO:2001070: starch binding	3.60E-03
63	GO:0080030: methyl indole-3-acetate esterase activity	3.60E-03
64	GO:0004332: fructose-bisphosphate aldolase activity	3.60E-03
65	GO:0004556: alpha-amylase activity	3.60E-03
66	GO:0000293: ferric-chelate reductase activity	3.60E-03
67	GO:0051920: peroxiredoxin activity	4.33E-03
68	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	4.33E-03
69	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	4.33E-03
70	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.33E-03
71	GO:0051082: unfolded protein binding	4.53E-03
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.64E-03
73	GO:0015035: protein disulfide oxidoreductase activity	4.70E-03
74	GO:0009881: photoreceptor activity	5.11E-03
75	GO:0019899: enzyme binding	5.11E-03
76	GO:0046872: metal ion binding	5.39E-03
77	GO:0016209: antioxidant activity	5.94E-03
78	GO:0008135: translation factor activity, RNA binding	6.81E-03
79	GO:0005375: copper ion transmembrane transporter activity	6.81E-03
80	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	7.73E-03
81	GO:0003746: translation elongation factor activity	9.77E-03
82	GO:0009055: electron carrier activity	1.01E-02
83	GO:0003993: acid phosphatase activity	1.02E-02
84	GO:0000049: tRNA binding	1.18E-02
85	GO:0004089: carbonate dehydratase activity	1.29E-02
86	GO:0005262: calcium channel activity	1.29E-02
87	GO:0004565: beta-galactosidase activity	1.29E-02
88	GO:0008083: growth factor activity	1.41E-02
89	GO:0005198: structural molecule activity	1.42E-02
90	GO:0008408: 3'-5' exonuclease activity	2.03E-02
91	GO:0033612: receptor serine/threonine kinase binding	2.03E-02
92	GO:0022891: substrate-specific transmembrane transporter activity	2.31E-02
93	GO:0003727: single-stranded RNA binding	2.45E-02
94	GO:0003756: protein disulfide isomerase activity	2.45E-02
95	GO:0050662: coenzyme binding	3.05E-02
96	GO:0016491: oxidoreductase activity	3.38E-02
97	GO:0003924: GTPase activity	3.39E-02
98	GO:0008483: transaminase activity	4.02E-02
99	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.02E-02
100	GO:0016413: O-acetyltransferase activity	4.19E-02
101	GO:0008017: microtubule binding	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0010368: chloroplast isoamylase complex	0.00E+00
5	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
6	GO:0009515: granal stacked thylakoid	0.00E+00
7	GO:0009507: chloroplast	4.58E-52
8	GO:0009535: chloroplast thylakoid membrane	1.91E-48
9	GO:0009534: chloroplast thylakoid	5.74E-41
10	GO:0009579: thylakoid	4.03E-26
11	GO:0009570: chloroplast stroma	4.75E-26
12	GO:0009941: chloroplast envelope	4.73E-23
13	GO:0009543: chloroplast thylakoid lumen	8.82E-18
14	GO:0010287: plastoglobule	2.19E-16
15	GO:0030095: chloroplast photosystem II	5.38E-14
16	GO:0009654: photosystem II oxygen evolving complex	4.04E-11
17	GO:0031977: thylakoid lumen	5.96E-11
18	GO:0019898: extrinsic component of membrane	8.02E-10
19	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.17E-09
20	GO:0009522: photosystem I	2.88E-08
21	GO:0009523: photosystem II	3.65E-08
22	GO:0009538: photosystem I reaction center	1.21E-07
23	GO:0030076: light-harvesting complex	3.44E-06
24	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.06E-06
25	GO:0010319: stromule	6.23E-05
26	GO:0009517: PSII associated light-harvesting complex II	7.06E-05
27	GO:0042651: thylakoid membrane	1.60E-04
28	GO:0031361: integral component of thylakoid membrane	3.34E-04
29	GO:0000791: euchromatin	3.34E-04
30	GO:0009783: photosystem II antenna complex	3.34E-04
31	GO:0048046: apoplast	3.36E-04
32	GO:0030870: Mre11 complex	7.29E-04
33	GO:0009528: plastid inner membrane	1.18E-03
34	GO:0010007: magnesium chelatase complex	1.18E-03
35	GO:0033281: TAT protein transport complex	1.18E-03
36	GO:0009527: plastid outer membrane	2.28E-03
37	GO:0055035: plastid thylakoid membrane	2.91E-03
38	GO:0000795: synaptonemal complex	2.91E-03
39	GO:0016272: prefoldin complex	4.33E-03
40	GO:0031305: integral component of mitochondrial inner membrane	5.94E-03
41	GO:0009707: chloroplast outer membrane	7.70E-03
42	GO:0008180: COP9 signalosome	7.73E-03
43	GO:0005840: ribosome	7.81E-03
44	GO:0016021: integral component of membrane	8.84E-03
45	GO:0055028: cortical microtubule	9.69E-03
46	GO:0005740: mitochondrial envelope	9.69E-03
47	GO:0012511: monolayer-surrounded lipid storage body	1.07E-02
48	GO:0032040: small-subunit processome	1.18E-02
49	GO:0009508: plastid chromosome	1.29E-02
50	GO:0005938: cell cortex	1.29E-02
51	GO:0015935: small ribosomal subunit	2.03E-02
52	GO:0009532: plastid stroma	2.03E-02
53	GO:0031969: chloroplast membrane	2.08E-02
54	GO:0016020: membrane	2.30E-02
55	GO:0015629: actin cytoskeleton	2.31E-02
56	GO:0000785: chromatin	3.52E-02
57	GO:0005759: mitochondrial matrix	3.82E-02
58	GO:0009295: nucleoid	4.02E-02
59	GO:0030529: intracellular ribonucleoprotein complex	4.37E-02