co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G67590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0007638: mechanosensory behavior	0.00E+00
2	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
3	GO:0006114: glycerol biosynthetic process	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:2000469: negative regulation of peroxidase activity	0.00E+00
8	GO:0009715: chalcone biosynthetic process	0.00E+00
9	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
10	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
11	GO:0015979: photosynthesis	1.00E-13
12	GO:0009773: photosynthetic electron transport in photosystem I	5.34E-07
13	GO:0042549: photosystem II stabilization	1.45E-06
14	GO:0010027: thylakoid membrane organization	1.99E-06
15	GO:0018298: protein-chromophore linkage	4.04E-06
16	GO:0010206: photosystem II repair	1.25E-05
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.76E-05
18	GO:0009765: photosynthesis, light harvesting	4.98E-05
19	GO:0010207: photosystem II assembly	5.34E-05
20	GO:0009768: photosynthesis, light harvesting in photosystem I	1.04E-04
21	GO:0009637: response to blue light	1.13E-04
22	GO:0010196: nonphotochemical quenching	2.07E-04
23	GO:0043953: protein transport by the Tat complex	2.72E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	2.72E-04
25	GO:0000481: maturation of 5S rRNA	2.72E-04
26	GO:1904964: positive regulation of phytol biosynthetic process	2.72E-04
27	GO:0065002: intracellular protein transmembrane transport	2.72E-04
28	GO:0043007: maintenance of rDNA	2.72E-04
29	GO:0034337: RNA folding	2.72E-04
30	GO:0010362: negative regulation of anion channel activity by blue light	2.72E-04
31	GO:0010493: Lewis a epitope biosynthetic process	2.72E-04
32	GO:0000476: maturation of 4.5S rRNA	2.72E-04
33	GO:0000967: rRNA 5'-end processing	2.72E-04
34	GO:0010205: photoinhibition	4.62E-04
35	GO:0006432: phenylalanyl-tRNA aminoacylation	5.99E-04
36	GO:0018026: peptidyl-lysine monomethylation	5.99E-04
37	GO:0010155: regulation of proton transport	5.99E-04
38	GO:0006729: tetrahydrobiopterin biosynthetic process	5.99E-04
39	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.99E-04
40	GO:0080181: lateral root branching	5.99E-04
41	GO:0034470: ncRNA processing	5.99E-04
42	GO:0035304: regulation of protein dephosphorylation	5.99E-04
43	GO:0009629: response to gravity	5.99E-04
44	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.99E-04
45	GO:0019684: photosynthesis, light reaction	6.22E-04
46	GO:0015995: chlorophyll biosynthetic process	6.44E-04
47	GO:0016311: dephosphorylation	6.88E-04
48	GO:0006810: transport	8.59E-04
49	GO:0005977: glycogen metabolic process	9.72E-04
50	GO:0006000: fructose metabolic process	9.72E-04
51	GO:0090391: granum assembly	9.72E-04
52	GO:0010114: response to red light	1.35E-03
53	GO:2001141: regulation of RNA biosynthetic process	1.39E-03
54	GO:0006020: inositol metabolic process	1.39E-03
55	GO:0007231: osmosensory signaling pathway	1.39E-03
56	GO:0071484: cellular response to light intensity	1.39E-03
57	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.39E-03
58	GO:0009650: UV protection	1.39E-03
59	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.39E-03
60	GO:0006552: leucine catabolic process	1.86E-03
61	GO:0006021: inositol biosynthetic process	1.86E-03
62	GO:0010021: amylopectin biosynthetic process	1.86E-03
63	GO:0015976: carbon utilization	1.86E-03
64	GO:0006109: regulation of carbohydrate metabolic process	1.86E-03
65	GO:0015994: chlorophyll metabolic process	1.86E-03
66	GO:0022622: root system development	1.86E-03
67	GO:0033500: carbohydrate homeostasis	1.86E-03
68	GO:0006564: L-serine biosynthetic process	2.37E-03
69	GO:0009904: chloroplast accumulation movement	2.37E-03
70	GO:0006465: signal peptide processing	2.37E-03
71	GO:0016558: protein import into peroxisome matrix	2.37E-03
72	GO:0009646: response to absence of light	2.63E-03
73	GO:0005975: carbohydrate metabolic process	2.91E-03
74	GO:0046855: inositol phosphate dephosphorylation	2.93E-03
75	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.93E-03
76	GO:0042793: transcription from plastid promoter	2.93E-03
77	GO:0032502: developmental process	3.22E-03
78	GO:0009903: chloroplast avoidance movement	3.52E-03
79	GO:1900057: positive regulation of leaf senescence	4.15E-03
80	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.15E-03
81	GO:0009769: photosynthesis, light harvesting in photosystem II	4.15E-03
82	GO:0009645: response to low light intensity stimulus	4.15E-03
83	GO:0022904: respiratory electron transport chain	4.15E-03
84	GO:0030307: positive regulation of cell growth	4.15E-03
85	GO:0032880: regulation of protein localization	4.15E-03
86	GO:0071446: cellular response to salicylic acid stimulus	4.15E-03
87	GO:0045454: cell redox homeostasis	4.17E-03
88	GO:0006605: protein targeting	4.82E-03
89	GO:0070413: trehalose metabolism in response to stress	4.82E-03
90	GO:0032508: DNA duplex unwinding	4.82E-03
91	GO:0031540: regulation of anthocyanin biosynthetic process	4.82E-03
92	GO:0000105: histidine biosynthetic process	4.82E-03
93	GO:0009231: riboflavin biosynthetic process	4.82E-03
94	GO:0016559: peroxisome fission	4.82E-03
95	GO:0048564: photosystem I assembly	4.82E-03
96	GO:0030091: protein repair	4.82E-03
97	GO:0009642: response to light intensity	4.82E-03
98	GO:0017004: cytochrome complex assembly	5.52E-03
99	GO:2000031: regulation of salicylic acid mediated signaling pathway	5.52E-03
100	GO:0006002: fructose 6-phosphate metabolic process	5.52E-03
101	GO:0071482: cellular response to light stimulus	5.52E-03
102	GO:0009813: flavonoid biosynthetic process	5.97E-03
103	GO:0010218: response to far red light	6.27E-03
104	GO:0048527: lateral root development	6.57E-03
105	GO:0009638: phototropism	7.03E-03
106	GO:0006779: porphyrin-containing compound biosynthetic process	7.03E-03
107	GO:0048829: root cap development	7.82E-03
108	GO:0006949: syncytium formation	7.82E-03
109	GO:0006782: protoporphyrinogen IX biosynthetic process	7.82E-03
110	GO:0043085: positive regulation of catalytic activity	8.66E-03
111	GO:0006352: DNA-templated transcription, initiation	8.66E-03
112	GO:0018119: peptidyl-cysteine S-nitrosylation	8.66E-03
113	GO:0006816: calcium ion transport	8.66E-03
114	GO:0009089: lysine biosynthetic process via diaminopimelate	8.66E-03
115	GO:0009073: aromatic amino acid family biosynthetic process	8.66E-03
116	GO:0006790: sulfur compound metabolic process	9.52E-03
117	GO:0005983: starch catabolic process	9.52E-03
118	GO:0009785: blue light signaling pathway	1.04E-02
119	GO:0010628: positive regulation of gene expression	1.04E-02
120	GO:0006094: gluconeogenesis	1.04E-02
121	GO:0005986: sucrose biosynthetic process	1.04E-02
122	GO:2000012: regulation of auxin polar transport	1.04E-02
123	GO:0019253: reductive pentose-phosphate cycle	1.13E-02
124	GO:0006302: double-strand break repair	1.13E-02
125	GO:0010020: chloroplast fission	1.13E-02
126	GO:0009664: plant-type cell wall organization	1.17E-02
127	GO:0005985: sucrose metabolic process	1.23E-02
128	GO:0010030: positive regulation of seed germination	1.23E-02
129	GO:0070588: calcium ion transmembrane transport	1.23E-02
130	GO:0046854: phosphatidylinositol phosphorylation	1.23E-02
131	GO:0019853: L-ascorbic acid biosynthetic process	1.23E-02
132	GO:0006833: water transport	1.33E-02
133	GO:0000162: tryptophan biosynthetic process	1.33E-02
134	GO:0005992: trehalose biosynthetic process	1.43E-02
135	GO:0048511: rhythmic process	1.64E-02
136	GO:0019915: lipid storage	1.64E-02
137	GO:0061077: chaperone-mediated protein folding	1.64E-02
138	GO:0009269: response to desiccation	1.64E-02
139	GO:0048278: vesicle docking	1.64E-02
140	GO:0051321: meiotic cell cycle	1.64E-02
141	GO:0019748: secondary metabolic process	1.75E-02
142	GO:0009411: response to UV	1.86E-02
143	GO:0071369: cellular response to ethylene stimulus	1.86E-02
144	GO:0006012: galactose metabolic process	1.86E-02
145	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.86E-02
146	GO:0006284: base-excision repair	1.97E-02
147	GO:0009561: megagametogenesis	1.97E-02
148	GO:0009306: protein secretion	1.97E-02
149	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.09E-02
150	GO:0008284: positive regulation of cell proliferation	2.09E-02
151	GO:0034220: ion transmembrane transport	2.21E-02
152	GO:0042631: cellular response to water deprivation	2.21E-02
153	GO:0006281: DNA repair	2.32E-02
154	GO:0006662: glycerol ether metabolic process	2.33E-02
155	GO:0048868: pollen tube development	2.33E-02
156	GO:0009958: positive gravitropism	2.33E-02
157	GO:0061025: membrane fusion	2.45E-02
158	GO:0006814: sodium ion transport	2.45E-02
159	GO:0042752: regulation of circadian rhythm	2.45E-02
160	GO:0019252: starch biosynthetic process	2.58E-02
161	GO:0006635: fatty acid beta-oxidation	2.71E-02
162	GO:0071554: cell wall organization or biogenesis	2.71E-02
163	GO:0010583: response to cyclopentenone	2.84E-02
164	GO:0010252: auxin homeostasis	3.10E-02
165	GO:0009828: plant-type cell wall loosening	3.10E-02
166	GO:0009567: double fertilization forming a zygote and endosperm	3.10E-02
167	GO:0007623: circadian rhythm	3.10E-02
168	GO:0006470: protein dephosphorylation	3.55E-02
169	GO:0006906: vesicle fusion	3.80E-02
170	GO:0009735: response to cytokinin	4.23E-02
171	GO:0009817: defense response to fungus, incompatible interaction	4.25E-02
172	GO:0007165: signal transduction	4.35E-02
173	GO:0000160: phosphorelay signal transduction system	4.40E-02
174	GO:0009834: plant-type secondary cell wall biogenesis	4.55E-02
175	GO:0006499: N-terminal protein myristoylation	4.55E-02
176	GO:0010119: regulation of stomatal movement	4.71E-02
177	GO:0009555: pollen development	4.72E-02
178	GO:0009658: chloroplast organization	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0042623: ATPase activity, coupled	0.00E+00
2	GO:0048039: ubiquinone binding	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
5	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
6	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
7	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
8	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
9	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
10	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
11	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
12	GO:0004462: lactoylglutathione lyase activity	1.45E-06
13	GO:0016168: chlorophyll binding	4.91E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	4.98E-05
15	GO:0031409: pigment binding	7.59E-05
16	GO:0019203: carbohydrate phosphatase activity	2.72E-04
17	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.72E-04
18	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.72E-04
19	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.72E-04
20	GO:0050308: sugar-phosphatase activity	2.72E-04
21	GO:0010242: oxygen evolving activity	2.72E-04
22	GO:0019172: glyoxalase III activity	5.99E-04
23	GO:0019156: isoamylase activity	5.99E-04
24	GO:0004826: phenylalanine-tRNA ligase activity	5.99E-04
25	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.99E-04
26	GO:0047746: chlorophyllase activity	5.99E-04
27	GO:0016868: intramolecular transferase activity, phosphotransferases	5.99E-04
28	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.99E-04
29	GO:0004617: phosphoglycerate dehydrogenase activity	5.99E-04
30	GO:0052832: inositol monophosphate 3-phosphatase activity	5.99E-04
31	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.99E-04
32	GO:0008934: inositol monophosphate 1-phosphatase activity	5.99E-04
33	GO:0052833: inositol monophosphate 4-phosphatase activity	5.99E-04
34	GO:0031072: heat shock protein binding	8.06E-04
35	GO:0004565: beta-galactosidase activity	8.06E-04
36	GO:0004751: ribose-5-phosphate isomerase activity	9.72E-04
37	GO:0005504: fatty acid binding	9.72E-04
38	GO:0016851: magnesium chelatase activity	1.39E-03
39	GO:0009882: blue light photoreceptor activity	1.39E-03
40	GO:0008508: bile acid:sodium symporter activity	1.39E-03
41	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.39E-03
42	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.64E-03
43	GO:0042802: identical protein binding	1.69E-03
44	GO:0043495: protein anchor	1.86E-03
45	GO:0016279: protein-lysine N-methyltransferase activity	1.86E-03
46	GO:0001053: plastid sigma factor activity	1.86E-03
47	GO:0004045: aminoacyl-tRNA hydrolase activity	1.86E-03
48	GO:0080032: methyl jasmonate esterase activity	1.86E-03
49	GO:0016987: sigma factor activity	1.86E-03
50	GO:0045430: chalcone isomerase activity	1.86E-03
51	GO:0008725: DNA-3-methyladenine glycosylase activity	2.37E-03
52	GO:0004556: alpha-amylase activity	2.93E-03
53	GO:0042578: phosphoric ester hydrolase activity	2.93E-03
54	GO:2001070: starch binding	2.93E-03
55	GO:0080030: methyl indole-3-acetate esterase activity	2.93E-03
56	GO:0048038: quinone binding	3.02E-03
57	GO:0015035: protein disulfide oxidoreductase activity	3.20E-03
58	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.52E-03
59	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.52E-03
60	GO:0019899: enzyme binding	4.15E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	4.82E-03
62	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.25E-03
63	GO:0008417: fucosyltransferase activity	6.25E-03
64	GO:0009055: electron carrier activity	6.37E-03
65	GO:0030145: manganese ion binding	6.57E-03
66	GO:0003993: acid phosphatase activity	7.53E-03
67	GO:0004805: trehalose-phosphatase activity	7.82E-03
68	GO:0008047: enzyme activator activity	7.82E-03
69	GO:0015020: glucuronosyltransferase activity	7.82E-03
70	GO:0004185: serine-type carboxypeptidase activity	9.30E-03
71	GO:0000049: tRNA binding	9.52E-03
72	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.52E-03
73	GO:0008081: phosphoric diester hydrolase activity	1.04E-02
74	GO:0004089: carbonate dehydratase activity	1.04E-02
75	GO:0000155: phosphorelay sensor kinase activity	1.04E-02
76	GO:0005262: calcium channel activity	1.04E-02
77	GO:0008266: poly(U) RNA binding	1.13E-02
78	GO:0008083: growth factor activity	1.13E-02
79	GO:0004857: enzyme inhibitor activity	1.43E-02
80	GO:0005528: FK506 binding	1.43E-02
81	GO:0008408: 3'-5' exonuclease activity	1.64E-02
82	GO:0051082: unfolded protein binding	1.79E-02
83	GO:0022891: substrate-specific transmembrane transporter activity	1.86E-02
84	GO:0003727: single-stranded RNA binding	1.97E-02
85	GO:0003756: protein disulfide isomerase activity	1.97E-02
86	GO:0004722: protein serine/threonine phosphatase activity	2.00E-02
87	GO:0047134: protein-disulfide reductase activity	2.09E-02
88	GO:0046872: metal ion binding	2.12E-02
89	GO:0019843: rRNA binding	2.25E-02
90	GO:0010181: FMN binding	2.45E-02
91	GO:0004791: thioredoxin-disulfide reductase activity	2.45E-02
92	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.97E-02
93	GO:0016791: phosphatase activity	3.10E-02
94	GO:0008483: transaminase activity	3.24E-02
95	GO:0008017: microtubule binding	3.25E-02
96	GO:0016597: amino acid binding	3.38E-02
97	GO:0016413: O-acetyltransferase activity	3.38E-02
98	GO:0005509: calcium ion binding	3.45E-02
99	GO:0015250: water channel activity	3.52E-02
100	GO:0004721: phosphoprotein phosphatase activity	3.95E-02
101	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.25E-02
102	GO:0005096: GTPase activator activity	4.40E-02
103	GO:0016787: hydrolase activity	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
5	GO:0043235: receptor complex	0.00E+00
6	GO:0009507: chloroplast	2.27E-34
7	GO:0009535: chloroplast thylakoid membrane	1.38E-26
8	GO:0009534: chloroplast thylakoid	1.61E-23
9	GO:0009570: chloroplast stroma	6.99E-15
10	GO:0009579: thylakoid	8.92E-11
11	GO:0009543: chloroplast thylakoid lumen	1.36E-09
12	GO:0030095: chloroplast photosystem II	2.05E-08
13	GO:0009941: chloroplast envelope	2.60E-08
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.64E-07
15	GO:0010287: plastoglobule	5.11E-07
16	GO:0009654: photosystem II oxygen evolving complex	3.66E-06
17	GO:0009538: photosystem I reaction center	6.19E-06
18	GO:0031977: thylakoid lumen	1.15E-05
19	GO:0019898: extrinsic component of membrane	1.82E-05
20	GO:0009522: photosystem I	2.68E-04
21	GO:0009515: granal stacked thylakoid	2.72E-04
22	GO:0005787: signal peptidase complex	2.72E-04
23	GO:0031361: integral component of thylakoid membrane	2.72E-04
24	GO:0000791: euchromatin	2.72E-04
25	GO:0009783: photosystem II antenna complex	2.72E-04
26	GO:0009523: photosystem II	2.95E-04
27	GO:0030870: Mre11 complex	5.99E-04
28	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.99E-04
29	GO:0010007: magnesium chelatase complex	9.72E-04
30	GO:0033281: TAT protein transport complex	9.72E-04
31	GO:0030076: light-harvesting complex	1.01E-03
32	GO:0042651: thylakoid membrane	1.37E-03
33	GO:0009531: secondary cell wall	1.39E-03
34	GO:0009898: cytoplasmic side of plasma membrane	1.86E-03
35	GO:0009517: PSII associated light-harvesting complex II	1.86E-03
36	GO:0000795: synaptonemal complex	2.37E-03
37	GO:0009986: cell surface	4.15E-03
38	GO:0009533: chloroplast stromal thylakoid	4.15E-03
39	GO:0031305: integral component of mitochondrial inner membrane	4.82E-03
40	GO:0008180: COP9 signalosome	6.25E-03
41	GO:0055028: cortical microtubule	7.82E-03
42	GO:0005740: mitochondrial envelope	7.82E-03
43	GO:0032040: small-subunit processome	9.52E-03
44	GO:0009508: plastid chromosome	1.04E-02
45	GO:0048046: apoplast	1.89E-02
46	GO:0009504: cell plate	2.58E-02
47	GO:0000785: chromatin	2.84E-02
48	GO:0032580: Golgi cisterna membrane	3.10E-02
49	GO:0005778: peroxisomal membrane	3.24E-02
50	GO:0010319: stromule	3.24E-02
51	GO:0009295: nucleoid	3.24E-02
52	GO:0030529: intracellular ribonucleoprotein complex	3.52E-02
53	GO:0019005: SCF ubiquitin ligase complex	4.25E-02
54	GO:0009707: chloroplast outer membrane	4.25E-02
55	GO:0016021: integral component of membrane	4.49E-02